Wall clock time and date at job start Tue Mar 31 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28516 * 124.44176 * 2 1 4 4 C 1.31128 * 109.05907 * 179.97438 * 3 2 1 5 5 C 1.40926 * 105.77749 * 359.97438 * 4 3 2 6 6 C 1.47797 * 127.23752 * 180.02562 * 5 4 3 7 7 O 1.21555 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99959 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64672 * 0.02562 * 8 6 5 10 10 C 1.54331 * 107.26966 * 181.02592 * 9 8 6 11 11 H 1.09003 * 110.72142 * 140.55682 * 10 9 8 12 12 N 1.46498 * 110.71475 * 263.82654 * 10 9 8 13 13 C 1.36939 * 120.00149 * 273.54441 * 12 10 9 14 14 H 1.08000 * 120.00201 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99988 * 180.02562 * 13 12 10 16 16 N 1.31620 * 119.99868 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99953 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47067 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47054 * 119.99988 * 17 15 13 20 20 H 1.48500 * 109.46982 * 240.00256 * 17 15 13 21 21 C 1.55150 * 102.94390 * 22.18903 * 10 9 8 22 22 C 1.53002 * 111.00372 * 82.57143 * 21 10 9 23 23 C 1.53001 * 111.00690 * 206.38870 * 21 10 9 24 24 C 1.47423 * 125.64787 * 179.71538 * 8 6 5 25 25 N 1.28582 * 124.44262 * 179.69488 * 2 1 3 26 26 H 1.09001 * 109.47060 * 90.03070 * 1 2 3 27 27 H 1.09004 * 109.47073 * 210.02558 * 1 2 3 28 28 H 1.09000 * 109.47212 * 330.02641 * 1 2 3 29 29 H 1.08001 * 127.10991 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.88568 * 300.43667 * 9 8 6 31 31 H 1.08998 * 109.88628 * 61.60770 * 9 8 6 32 32 H 0.96999 * 120.00223 * 93.55124 * 12 10 9 33 33 H 0.97001 * 120.00016 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.46686 * 60.00560 * 22 21 10 35 35 H 1.08998 * 109.47335 * 179.97438 * 22 21 10 36 36 H 1.08997 * 109.47232 * 300.00526 * 22 21 10 37 37 H 1.08998 * 109.47025 * 60.00155 * 23 21 10 38 38 H 1.09004 * 109.47097 * 180.02562 * 23 21 10 39 39 H 1.08997 * 109.46561 * 299.99934 * 23 21 10 40 40 H 1.08995 * 110.36955 * 274.74792 * 24 8 6 41 41 H 1.09003 * 110.36914 * 37.07176 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0006 5 6 3.4659 -0.6972 0.0015 6 6 4.6487 -1.5834 0.0029 7 8 5.7663 -1.1054 0.0039 8 7 4.4881 -2.9216 0.0032 9 6 3.1998 -3.6299 0.0017 10 6 3.5083 -5.1419 0.0291 11 1 2.8074 -5.6667 0.6783 12 7 3.4811 -5.7009 -1.3248 13 6 2.2980 -6.1292 -1.8651 14 1 1.3848 -6.0546 -1.2934 15 6 2.2724 -6.6594 -3.1478 16 7 3.3854 -6.7508 -3.8444 17 14 0.6586 -7.2444 -3.8846 18 1 -0.4377 -7.0345 -2.9051 19 1 0.3710 -6.4741 -5.1212 20 1 0.7595 -8.6891 -4.2134 21 6 4.9438 -5.1931 0.6155 22 6 4.9153 -5.1129 2.1431 23 6 5.6823 -6.4492 0.1488 24 6 5.5752 -3.9174 -0.0014 25 7 2.1923 -1.0604 0.0056 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 4.3130 1.3696 0.0003 30 1 2.6235 -3.3532 0.8846 31 1 2.6414 -3.3818 -0.9009 32 1 4.3012 -5.7677 -1.8385 33 1 3.3675 -7.1210 -4.7409 34 1 4.3454 -5.9528 2.5404 35 1 5.9343 -5.1514 2.5280 36 1 4.4459 -4.1781 2.4492 37 1 5.7491 -6.4483 -0.9391 38 1 6.6856 -6.4601 0.5748 39 1 5.1382 -7.3341 0.4787 40 1 5.9080 -4.1110 -1.0210 41 1 6.4081 -3.5726 0.6114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996404585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:13 Heat of formation + Delta-G solvation = 97.545740 kcal Electronic energy + Delta-G solvation = -24364.956991 eV Core-core repulsion = 20897.471860 eV Total energy + Delta-G solvation = -3467.485131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.60644 -39.85592 -37.81408 -34.00686 -33.81469 -33.27932 -32.37910 -30.74788 -28.28691 -27.90994 -26.70416 -26.33159 -24.01728 -23.27286 -22.09822 -21.34397 -19.38620 -18.76268 -17.23283 -17.21533 -16.99989 -16.50823 -15.66665 -15.20697 -14.78956 -14.67918 -14.11591 -13.85932 -13.65103 -13.15812 -13.14207 -12.91328 -12.65342 -12.42441 -12.18708 -11.84498 -11.74541 -11.61235 -11.46703 -11.03282 -10.93972 -10.91147 -10.56357 -10.44542 -10.36268 -10.21163 -9.96931 -9.78331 -9.64125 -9.42332 -8.99355 -8.21204 -7.04380 -5.83199 -3.12478 1.42420 1.97259 2.15001 3.24764 3.38485 3.43909 3.46612 3.48029 3.95128 4.52271 4.64888 4.83316 4.86993 4.98123 5.10211 5.12801 5.16310 5.26431 5.48197 5.62551 5.71182 5.77587 5.80656 5.89765 5.95974 6.00220 6.16758 6.21938 6.26168 6.35218 6.39864 6.41963 6.52760 6.65924 6.67602 6.86549 6.93736 7.65192 7.82627 8.11180 8.34716 8.39050 9.46792 10.02113 10.37022 11.39192 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.005813 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.052796 B = 4815.299563 C = 6335.243585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.149 5.149 3 N -0.297 5.297 4 C 0.031 3.969 5 C -0.038 4.038 6 C 0.616 3.384 7 O -0.545 6.545 8 N -0.588 5.588 9 C 0.082 3.918 10 C 0.177 3.823 11 H 0.070 0.930 12 N -0.712 5.712 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 0.905 3.095 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.291 1.291 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.125 4.125 24 C 0.121 3.879 25 N -0.235 5.235 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.206 0.794 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.387 0.613 33 H 0.255 0.745 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 9.803 11.141 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.051 5.051 3 N -0.137 5.137 4 C -0.153 4.153 5 C -0.201 4.201 6 C 0.402 3.598 7 O -0.422 6.422 8 N -0.319 5.319 9 C -0.044 4.044 10 C 0.065 3.935 11 H 0.087 0.913 12 N -0.353 5.353 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.577 5.577 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.218 1.218 21 C -0.091 4.091 22 C -0.187 4.187 23 C -0.183 4.183 24 C -0.001 4.001 25 N -0.083 5.083 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.223 0.777 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.222 0.778 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.228 10.045 11.076 15.297 hybrid contribution 0.051 -0.206 -0.833 0.859 sum -3.177 9.839 10.243 14.554 Atomic orbital electron populations 1.22226 0.69847 1.05993 1.05422 1.48087 1.09223 0.99397 1.48412 1.73950 1.03836 1.15794 1.20098 1.24778 0.94199 0.93682 1.02621 1.23048 0.91405 0.94542 1.11090 1.16233 0.85835 0.80397 0.77374 1.90772 1.23893 1.74900 1.52605 1.48209 1.09999 1.03902 1.69834 1.23296 0.84025 0.95279 1.01756 1.21274 0.93288 0.90123 0.88843 0.91258 1.42459 1.08744 1.72687 1.11440 1.19257 0.87303 1.33407 0.97294 0.91012 1.24734 0.96905 1.01836 0.97117 1.69663 1.25334 1.51098 1.11644 0.86151 0.83051 0.78156 0.78991 1.20539 1.21976 1.21835 1.22060 0.97293 0.94542 0.95195 1.21676 1.01444 1.01612 0.93950 1.21575 0.98249 0.96018 1.02419 1.22387 0.89593 0.86922 1.01182 1.74661 1.03093 1.14819 1.15775 0.88833 0.87527 0.87834 0.77712 0.92403 0.90101 0.77763 0.93474 0.92298 0.92754 0.92900 0.91171 0.93578 0.92065 0.90868 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.55 59.85 0.69 1.49 16 2 N -0.15 -1.95 4.35 -16.63 -0.07 -2.03 16 3 N -0.30 -4.08 12.01 30.90 0.37 -3.71 16 4 C 0.03 0.44 12.04 -16.84 -0.20 0.24 16 5 C -0.04 -0.62 7.03 -82.68 -0.58 -1.21 16 6 C 0.62 11.25 7.86 -12.35 -0.10 11.15 16 7 O -0.54 -10.83 17.21 5.32 0.09 -10.74 16 8 N -0.59 -10.48 3.31 -171.50 -0.57 -11.05 16 9 C 0.08 1.48 4.98 -3.06 -0.02 1.46 16 10 C 0.18 3.29 2.86 -66.10 -0.19 3.10 16 11 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 12 N -0.71 -16.59 4.61 -51.65 -0.24 -16.82 16 13 C -0.24 -6.31 9.98 -15.06 -0.15 -6.46 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 16 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 17 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.09 -1.40 0.83 -152.24 -0.13 -1.53 16 22 C -0.13 -1.70 8.58 37.16 0.32 -1.38 16 23 C -0.12 -1.96 8.22 37.16 0.31 -1.65 16 24 C 0.12 2.04 5.82 -2.41 -0.01 2.03 16 25 N -0.24 -3.69 9.73 33.42 0.33 -3.37 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.21 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 31 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 32 H 0.39 9.66 6.10 -40.82 -0.25 9.42 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 37 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.34 7.99 -51.93 -0.41 0.92 16 41 H 0.07 1.16 7.95 -51.93 -0.41 0.75 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -32.37 341.34 -5.36 -37.73 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.96 Total: 7.71 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.16 Total: 6.89 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.54 Total: -63.39 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.37 -5.36 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996404585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.280 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds