Wall clock time and date at job start Tue Mar 31 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28516 * 124.44176 * 2 1 4 4 C 1.31128 * 109.05907 * 179.97438 * 3 2 1 5 5 C 1.40926 * 105.77749 * 359.97438 * 4 3 2 6 6 C 1.47797 * 127.23752 * 180.02562 * 5 4 3 7 7 O 1.21555 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99959 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64672 * 0.02562 * 8 6 5 10 10 C 1.54331 * 107.26966 * 181.02592 * 9 8 6 11 11 H 1.09003 * 110.72142 * 140.55682 * 10 9 8 12 12 N 1.46498 * 110.71475 * 263.82654 * 10 9 8 13 13 C 1.36939 * 120.00149 * 273.54441 * 12 10 9 14 14 H 1.08000 * 120.00201 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99988 * 180.02562 * 13 12 10 16 16 N 1.31620 * 119.99868 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99953 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47067 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47054 * 119.99988 * 17 15 13 20 20 H 1.48500 * 109.46982 * 240.00256 * 17 15 13 21 21 C 1.55150 * 102.94390 * 22.18903 * 10 9 8 22 22 C 1.53002 * 111.00372 * 82.57143 * 21 10 9 23 23 C 1.53001 * 111.00690 * 206.38870 * 21 10 9 24 24 C 1.47423 * 125.64787 * 179.71538 * 8 6 5 25 25 N 1.28582 * 124.44262 * 179.69488 * 2 1 3 26 26 H 1.09001 * 109.47060 * 90.03070 * 1 2 3 27 27 H 1.09004 * 109.47073 * 210.02558 * 1 2 3 28 28 H 1.09000 * 109.47212 * 330.02641 * 1 2 3 29 29 H 1.08001 * 127.10991 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.88568 * 300.43667 * 9 8 6 31 31 H 1.08998 * 109.88628 * 61.60770 * 9 8 6 32 32 H 0.96999 * 120.00223 * 93.55124 * 12 10 9 33 33 H 0.97001 * 120.00016 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.46686 * 60.00560 * 22 21 10 35 35 H 1.08998 * 109.47335 * 179.97438 * 22 21 10 36 36 H 1.08997 * 109.47232 * 300.00526 * 22 21 10 37 37 H 1.08998 * 109.47025 * 60.00155 * 23 21 10 38 38 H 1.09004 * 109.47097 * 180.02562 * 23 21 10 39 39 H 1.08997 * 109.46561 * 299.99934 * 23 21 10 40 40 H 1.08995 * 110.36955 * 274.74792 * 24 8 6 41 41 H 1.09003 * 110.36914 * 37.07176 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0006 5 6 3.4659 -0.6972 0.0015 6 6 4.6487 -1.5834 0.0029 7 8 5.7663 -1.1054 0.0039 8 7 4.4881 -2.9216 0.0032 9 6 3.1998 -3.6299 0.0017 10 6 3.5083 -5.1419 0.0291 11 1 2.8074 -5.6667 0.6783 12 7 3.4811 -5.7009 -1.3248 13 6 2.2980 -6.1292 -1.8651 14 1 1.3848 -6.0546 -1.2934 15 6 2.2724 -6.6594 -3.1478 16 7 3.3854 -6.7508 -3.8444 17 14 0.6586 -7.2444 -3.8846 18 1 -0.4377 -7.0345 -2.9051 19 1 0.3710 -6.4741 -5.1212 20 1 0.7595 -8.6891 -4.2134 21 6 4.9438 -5.1931 0.6155 22 6 4.9153 -5.1129 2.1431 23 6 5.6823 -6.4492 0.1488 24 6 5.5752 -3.9174 -0.0014 25 7 2.1923 -1.0604 0.0056 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 4.3130 1.3696 0.0003 30 1 2.6235 -3.3532 0.8846 31 1 2.6414 -3.3818 -0.9009 32 1 4.3012 -5.7677 -1.8385 33 1 3.3675 -7.1210 -4.7409 34 1 4.3454 -5.9528 2.5404 35 1 5.9343 -5.1514 2.5280 36 1 4.4459 -4.1781 2.4492 37 1 5.7491 -6.4483 -0.9391 38 1 6.6856 -6.4601 0.5748 39 1 5.1382 -7.3341 0.4787 40 1 5.9080 -4.1110 -1.0210 41 1 6.4081 -3.5726 0.6114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996404585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:13 Heat of formation + Delta-G solvation = 74.932583 kcal Electronic energy + Delta-G solvation = -24365.937571 eV Core-core repulsion = 20897.471860 eV Total energy + Delta-G solvation = -3468.465711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.70194 -41.27789 -39.26153 -35.75254 -34.96104 -34.55246 -33.55561 -32.59514 -29.46725 -29.25678 -28.01067 -27.56064 -25.77646 -24.60325 -23.26713 -22.72412 -20.71982 -20.19365 -19.08874 -18.28118 -18.06743 -17.89009 -17.17636 -16.57900 -16.41833 -15.77447 -15.73810 -15.47049 -14.92094 -14.61216 -14.29363 -13.85050 -13.78004 -13.67503 -13.48067 -13.22830 -13.07311 -12.96839 -12.84154 -12.76502 -12.67446 -12.15163 -12.09736 -12.00271 -11.83141 -11.54974 -11.43234 -11.38638 -11.20409 -10.92487 -10.50011 -9.66980 -8.99614 -7.91369 -5.19216 0.20597 0.85855 1.25030 1.48660 1.49188 1.58608 1.92944 2.12938 2.57716 2.84066 3.38768 3.40914 3.72244 3.82146 3.90492 3.97516 4.07465 4.27888 4.30155 4.33858 4.48544 4.50523 4.61880 4.66189 4.67022 4.81902 4.88874 4.91809 4.98550 5.04372 5.10555 5.13311 5.27983 5.35293 5.41623 5.53953 5.56151 5.62549 6.30102 6.40469 6.87960 7.09330 7.37664 8.11669 8.35260 9.32233 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.005813 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.052796 B = 4815.299563 C = 6335.243585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.137 5.137 3 N -0.297 5.297 4 C 0.031 3.969 5 C -0.067 4.067 6 C 0.614 3.386 7 O -0.567 6.567 8 N -0.591 5.591 9 C 0.101 3.899 10 C 0.169 3.831 11 H 0.078 0.922 12 N -0.722 5.722 13 C -0.231 4.231 14 H 0.081 0.919 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.301 1.301 20 H -0.296 1.296 21 C -0.076 4.076 22 C -0.122 4.122 23 C -0.119 4.119 24 C 0.120 3.880 25 N -0.249 5.249 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.226 0.774 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.376 0.624 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 10.465 13.089 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.042 5.042 3 N -0.137 5.137 4 C -0.151 4.151 5 C -0.228 4.228 6 C 0.400 3.600 7 O -0.446 6.446 8 N -0.322 5.322 9 C -0.025 4.025 10 C 0.058 3.942 11 H 0.096 0.904 12 N -0.362 5.362 13 C -0.363 4.363 14 H 0.099 0.901 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.229 1.229 20 H -0.224 1.224 21 C -0.077 4.077 22 C -0.180 4.180 23 C -0.177 4.177 24 C -0.002 4.002 25 N -0.099 5.099 26 H 0.125 0.875 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.243 0.757 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.209 0.791 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.524 10.725 13.081 17.510 hybrid contribution 0.381 -0.326 -1.381 1.469 sum -4.143 10.399 11.700 16.192 Atomic orbital electron populations 1.22774 0.66995 1.08155 1.06960 1.48674 1.10690 0.98634 1.46205 1.73970 1.03676 1.15865 1.20168 1.25130 0.95082 0.93057 1.01874 1.22881 0.91249 0.95224 1.13475 1.16497 0.86239 0.80522 0.76700 1.90743 1.24908 1.75244 1.53664 1.48268 1.10021 1.04110 1.69817 1.22959 0.83996 0.94524 1.01013 1.21515 0.95690 0.90125 0.86847 0.90387 1.42605 1.07509 1.72926 1.13129 1.19649 0.88423 1.31110 0.97088 0.90142 1.25468 0.99658 1.03418 0.98020 1.69821 1.27324 1.53217 1.11677 0.85177 0.80248 0.76954 0.78024 1.18600 1.22934 1.22358 1.22020 0.94834 0.93852 0.97033 1.21637 1.03016 1.02094 0.91214 1.21505 0.99893 0.95823 1.00447 1.22416 0.90023 0.87445 1.00339 1.74592 1.03112 1.16013 1.16195 0.87542 0.86147 0.85028 0.75747 0.90598 0.93160 0.79067 0.94288 0.91045 0.90792 0.93004 0.94317 0.90775 0.92308 0.93117 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.55 127.77 1.48 2.60 16 2 N -0.14 -3.35 4.35 -206.52 -0.90 -4.25 16 3 N -0.30 -7.60 12.01 -56.16 -0.67 -8.27 16 4 C 0.03 0.85 12.04 85.46 1.03 1.88 16 5 C -0.07 -2.18 7.03 42.24 0.30 -1.88 16 6 C 0.61 22.32 7.86 86.77 0.68 23.00 16 7 O -0.57 -22.52 17.21 -3.89 -0.07 -22.58 16 8 N -0.59 -20.92 3.31 -814.79 -2.70 -23.62 16 9 C 0.10 3.56 4.98 86.73 0.43 4.00 16 10 C 0.17 6.15 2.86 46.18 0.13 6.28 16 11 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 12 N -0.72 -33.98 4.61 -317.32 -1.46 -35.44 16 13 C -0.23 -12.05 9.98 84.03 0.84 -11.22 16 14 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 17 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 21 C -0.08 -2.29 0.83 -50.71 -0.04 -2.33 16 22 C -0.12 -2.85 8.58 71.98 0.62 -2.23 16 23 C -0.12 -3.63 8.22 71.98 0.59 -3.04 16 24 C 0.12 3.99 5.82 86.93 0.51 4.50 16 25 N -0.25 -7.54 9.73 -48.17 -0.47 -8.01 16 26 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.23 4.87 8.06 -2.91 -0.02 4.85 16 30 H 0.08 2.41 7.68 -2.38 -0.02 2.39 16 31 H 0.05 2.11 7.70 -2.39 -0.02 2.09 16 32 H 0.38 19.38 6.10 -92.71 -0.57 18.81 16 33 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 37 H 0.04 1.43 6.38 -2.39 -0.02 1.41 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 41 H 0.09 2.64 7.95 -2.39 -0.02 2.63 16 Total: -1.00 -70.48 341.34 3.54 -66.93 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.47 Total: 28.29 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 7.03 Total: 17.95 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -5.92 Total: -137.51 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.07 Total: -22.58 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.48 3.54 -66.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996404585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.864 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds