Wall clock time and date at job start Tue Mar 31 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.78196 * 2 1 4 4 C 1.54329 * 110.72290 * 123.23912 * 2 1 3 5 5 N 1.47019 * 107.27094 * 140.55063 * 4 2 1 6 6 C 1.34777 * 125.64379 * 181.01952 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72980 * 6 5 4 9 9 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 10 10 N 1.33237 * 125.53028 * 90.00016 * 9 8 6 11 11 C 1.30829 * 109.82933 * 180.02562 * 10 9 8 12 12 N 1.34424 * 108.08042 * 359.97438 * 11 10 9 13 13 H 0.97003 * 126.82602 * 179.97438 * 12 11 10 14 14 N 1.30717 * 125.52159 * 269.69325 * 9 8 6 15 15 C 1.47423 * 108.70731 * 1.29062 * 5 4 2 16 16 C 1.55137 * 104.71983 * 335.55081 * 15 5 4 17 17 H 1.08997 * 110.90402 * 155.27666 * 16 15 5 18 18 N 1.46492 * 111.22370 * 279.17704 * 16 15 5 19 19 C 1.36939 * 120.00161 * 267.20703 * 18 16 15 20 20 H 1.08000 * 119.99760 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00279 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99651 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47194 * 89.99872 * 23 21 19 25 25 H 1.48495 * 109.47115 * 209.99528 * 23 21 19 26 26 H 1.48500 * 109.47352 * 329.99990 * 23 21 19 27 27 H 1.09008 * 109.46770 * 298.21499 * 1 2 3 28 28 H 1.08998 * 109.47310 * 58.21387 * 1 2 3 29 29 H 1.08994 * 109.47126 * 178.21771 * 1 2 3 30 30 H 1.09000 * 109.47519 * 181.78865 * 3 2 1 31 31 H 1.09005 * 109.47297 * 301.78763 * 3 2 1 32 32 H 1.09002 * 109.47296 * 61.78275 * 3 2 1 33 33 H 1.09003 * 109.88005 * 21.13524 * 4 2 1 34 34 H 1.08999 * 110.00700 * 260.04719 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.08008 * 125.96088 * 179.97438 * 11 10 9 38 38 H 1.09007 * 110.36652 * 94.47561 * 15 5 4 39 39 H 1.08993 * 110.36828 * 216.80441 * 15 5 4 40 40 H 0.97003 * 120.00180 * 87.20297 * 18 16 15 41 41 H 0.97007 * 119.99588 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 3.2445 -1.5508 0.7389 6 6 3.9923 -2.3836 1.4898 7 8 3.7193 -2.5564 2.6588 8 6 5.1637 -3.1053 0.8750 9 6 5.8227 -3.9721 1.9168 10 7 5.5107 -5.2407 2.1788 11 6 6.2736 -5.6961 3.1391 12 7 7.1040 -4.7086 3.5161 13 1 7.7826 -4.7519 4.2079 14 7 6.7971 -3.6030 2.7062 15 6 3.4666 -1.2457 -0.6862 16 6 2.0789 -0.7955 -1.2138 17 1 2.1849 -0.1520 -2.0871 18 7 1.2266 -1.9483 -1.5150 19 6 1.2017 -2.4693 -2.7811 20 1 1.8108 -2.0305 -3.5576 21 6 0.3945 -3.5619 -3.0664 22 7 0.3702 -4.0623 -4.2835 23 14 -0.6584 -4.3212 -1.7232 24 1 -1.9875 -3.6591 -1.7024 25 1 -0.8321 -5.7715 -1.9908 26 1 0.0071 -4.1366 -0.4086 27 1 -0.3633 0.4859 0.9056 28 1 -0.3634 0.5413 -0.8735 29 1 -0.3633 -1.0271 -0.0320 30 1 3.1621 1.4057 -0.0321 31 1 1.6957 1.9622 -0.8735 32 1 1.7475 1.9425 0.9055 33 1 1.3130 -1.4758 1.5776 34 1 2.3736 -0.1043 1.9996 35 1 4.8150 -3.7287 0.0515 36 1 5.8831 -2.3773 0.5001 37 1 6.2417 -6.6919 3.5563 38 1 4.1947 -0.4415 -0.7930 39 1 3.8031 -2.1363 -1.2168 40 1 0.6798 -2.3426 -0.8174 41 1 -0.1942 -4.8256 -4.4829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996506532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:22 Heat of formation + Delta-G solvation = 71.147877 kcal Electronic energy + Delta-G solvation = -24109.965603 eV Core-core repulsion = 20641.335775 eV Total energy + Delta-G solvation = -3468.629828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15039 -40.01878 -37.98126 -33.98593 -33.48653 -33.12781 -31.71203 -31.06849 -29.26329 -28.33540 -26.84860 -25.88368 -23.65438 -22.87565 -21.55831 -20.80206 -19.11592 -18.86013 -18.28050 -17.58762 -16.80384 -15.96547 -15.62245 -15.24611 -14.81777 -14.49481 -14.38736 -13.82130 -13.72968 -13.33271 -13.11517 -12.67153 -12.44939 -12.32226 -12.20322 -12.12989 -11.97147 -11.69311 -11.50129 -11.28603 -10.97822 -10.60595 -10.54094 -10.25141 -10.22910 -10.07809 -9.96467 -9.87142 -9.60300 -9.48464 -9.03706 -8.30892 -7.32618 -5.82623 -3.19043 1.53449 2.55091 2.76117 2.90401 3.36695 3.39746 3.42341 3.46211 4.06201 4.56016 4.56700 4.61342 4.85015 4.97416 5.01807 5.05948 5.29581 5.41197 5.49893 5.55434 5.59463 5.68800 5.80203 5.86033 5.94335 6.05690 6.09962 6.12840 6.14589 6.23756 6.25975 6.31838 6.45955 6.55211 6.68315 6.71193 6.92663 7.82162 7.92145 8.02668 8.36325 8.42224 9.13747 9.86690 10.05234 11.35036 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.005232 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.771291 B = 5350.776080 C = 6572.762996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.131 4.131 4 C 0.122 3.878 5 N -0.604 5.604 6 C 0.539 3.461 7 O -0.547 6.547 8 C -0.047 4.047 9 C 0.256 3.744 10 N -0.531 5.531 11 C 0.260 3.740 12 N -0.487 5.487 13 H 0.440 0.560 14 N -0.308 5.308 15 C 0.064 3.936 16 C 0.185 3.815 17 H 0.084 0.916 18 N -0.733 5.733 19 C -0.250 4.250 20 H 0.093 0.907 21 C 0.013 3.987 22 N -0.929 5.929 23 Si 0.876 3.124 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.222 0.778 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.364 0.636 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.114 4.508 12.931 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 C -0.188 4.188 4 C -0.001 4.001 5 N -0.337 5.337 6 C 0.326 3.674 7 O -0.425 6.425 8 C -0.089 4.089 9 C -0.027 4.027 10 N -0.258 5.258 11 C -0.039 4.039 12 N -0.205 5.205 13 H 0.285 0.715 14 N -0.137 5.137 15 C -0.062 4.062 16 C 0.073 3.927 17 H 0.102 0.898 18 N -0.374 5.374 19 C -0.379 4.379 20 H 0.111 0.889 21 C -0.183 4.183 22 N -0.576 5.576 23 Si 0.706 3.294 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.202 1.202 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.198 0.802 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.051 4.811 13.093 17.796 hybrid contribution -0.288 -1.134 1.517 1.916 sum 10.763 3.676 14.611 18.516 Atomic orbital electron populations 1.21645 0.93099 1.02554 1.01195 1.21973 0.96606 0.95260 0.95632 1.21744 1.00799 0.94494 1.01780 1.21979 0.87647 0.94155 0.96280 1.48277 1.29458 1.43917 1.12086 1.19710 0.83174 0.78703 0.85850 1.90688 1.71158 1.64026 1.16605 1.19887 0.95889 0.97639 0.95478 1.23357 0.92520 0.90605 0.96202 1.70401 1.27165 1.10852 1.17421 1.26075 0.88290 0.96276 0.93255 1.48065 1.31567 1.09359 1.31526 0.71527 1.77951 1.20054 1.07545 1.08171 1.23520 1.01243 1.01205 0.80187 1.21346 0.87965 0.89032 0.94381 0.89798 1.42738 1.50616 1.34197 1.09896 1.19047 1.22372 1.10412 0.86114 0.88901 1.24617 0.99619 0.98194 0.95908 1.69690 1.42922 1.26489 1.18483 0.86685 0.81177 0.79175 0.82377 1.20941 1.21596 1.20198 0.93373 0.91729 0.92077 0.92529 0.92023 0.92764 0.91876 0.91990 0.85543 0.86644 0.76167 0.91891 0.89667 0.80169 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.16 37.16 0.30 -1.57 16 2 C -0.09 -1.34 0.80 -152.67 -0.12 -1.47 16 3 C -0.13 -1.50 8.44 37.16 0.31 -1.18 16 4 C 0.12 1.94 6.03 -3.06 -0.02 1.92 16 5 N -0.60 -10.05 3.32 -170.37 -0.57 -10.61 16 6 C 0.54 9.65 7.84 -10.98 -0.09 9.56 16 7 O -0.55 -11.64 16.36 5.55 0.09 -11.55 16 8 C -0.05 -0.70 5.33 -29.03 -0.15 -0.86 16 9 C 0.26 4.12 6.63 -156.85 -1.04 3.08 16 10 N -0.53 -8.34 11.19 -11.97 -0.13 -8.48 16 11 C 0.26 2.76 13.13 -90.66 -1.19 1.57 16 12 N -0.49 -5.02 7.45 29.53 0.22 -4.80 16 13 H 0.44 2.57 8.96 -182.33 -1.63 0.93 16 14 N -0.31 -4.56 12.80 32.42 0.41 -4.15 16 15 C 0.06 0.99 6.09 -2.41 -0.01 0.97 16 16 C 0.18 3.15 2.96 -65.66 -0.19 2.96 16 17 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 18 N -0.73 -16.03 4.38 -51.23 -0.22 -16.25 16 19 C -0.25 -6.56 10.44 -15.06 -0.16 -6.72 16 20 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 21 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 22 N -0.93 -28.24 13.97 55.49 0.78 -27.46 16 23 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 27 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.04 6.34 -51.93 -0.33 0.71 16 30 H 0.06 0.62 7.42 -51.93 -0.39 0.23 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 34 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 35 H 0.13 1.86 7.85 -51.92 -0.41 1.46 16 36 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.22 1.11 8.06 -52.48 -0.42 0.68 16 38 H 0.06 0.79 7.70 -51.92 -0.40 0.39 16 39 H 0.08 1.40 7.47 -51.93 -0.39 1.01 16 40 H 0.36 8.24 4.18 -40.82 -0.17 8.07 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -36.68 338.00 -8.57 -45.25 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.07 Total: 7.17 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.46 Total: 8.55 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: 0.49 Total: -71.75 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.68 -8.57 -45.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996506532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.398 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds