Wall clock time and date at job start Tue Mar 31 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.77773 * 2 1 4 4 C 1.54321 * 110.71580 * 123.23963 * 2 1 3 5 5 N 1.47025 * 107.27089 * 140.55952 * 4 2 1 6 6 C 1.34776 * 125.65280 * 181.02087 * 5 4 2 7 7 O 1.21283 * 119.99657 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00264 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47235 * 179.97438 * 8 6 5 10 10 N 1.33245 * 125.52410 * 269.69245 * 9 8 6 11 11 C 1.30832 * 109.82704 * 180.26051 * 10 9 8 12 12 N 1.34437 * 108.07767 * 0.02562 * 11 10 9 13 13 H 0.97001 * 126.82137 * 180.02562 * 12 11 10 14 14 N 1.30714 * 125.52919 * 90.00111 * 9 8 6 15 15 C 1.47429 * 108.70154 * 1.28424 * 5 4 2 16 16 C 1.55135 * 104.71872 * 335.55226 * 15 5 4 17 17 H 1.09000 * 111.22540 * 279.17367 * 16 15 5 18 18 N 1.46503 * 110.90061 * 155.27613 * 16 15 5 19 19 C 1.36938 * 120.00206 * 92.97666 * 18 16 15 20 20 H 1.08001 * 119.99626 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99936 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99651 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47166 * 90.00179 * 23 21 19 25 25 H 1.48497 * 109.47000 * 210.00203 * 23 21 19 26 26 H 1.48503 * 109.47176 * 330.00077 * 23 21 19 27 27 H 1.08996 * 109.47483 * 298.21123 * 1 2 3 28 28 H 1.09001 * 109.47313 * 58.21805 * 1 2 3 29 29 H 1.09006 * 109.47098 * 178.21319 * 1 2 3 30 30 H 1.08999 * 109.47220 * 181.78360 * 3 2 1 31 31 H 1.09001 * 109.47273 * 301.78419 * 3 2 1 32 32 H 1.09000 * 109.46900 * 61.78321 * 3 2 1 33 33 H 1.08996 * 109.88687 * 21.13787 * 4 2 1 34 34 H 1.09007 * 110.01006 * 260.04218 * 4 2 1 35 35 H 1.09008 * 109.47075 * 59.99854 * 8 6 5 36 36 H 1.08994 * 109.47339 * 300.00344 * 8 6 5 37 37 H 1.07998 * 125.96253 * 179.97438 * 11 10 9 38 38 H 1.08999 * 110.36601 * 94.47947 * 15 5 4 39 39 H 1.08994 * 110.36752 * 216.80687 * 15 5 4 40 40 H 0.97002 * 120.00089 * 272.97569 * 18 16 15 41 41 H 0.97001 * 119.99999 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7391 6 6 3.9923 -2.3836 1.4898 7 8 3.7197 -2.5558 2.6590 8 6 5.1672 -3.1009 0.8765 9 6 5.8299 -3.9629 1.9199 10 7 6.8212 -3.5807 2.7242 11 6 7.1664 -4.5722 3.5049 12 7 6.3878 -5.6273 3.2085 13 1 6.4133 -6.5035 3.6238 14 7 5.5295 -5.2084 2.1789 15 6 3.4666 -1.2455 -0.6861 16 6 2.0790 -0.7955 -1.2137 17 1 1.4449 -1.6532 -1.4379 18 7 2.2215 0.0696 -2.3875 19 6 2.1869 -0.4713 -3.6450 20 1 2.0549 -1.5357 -3.7715 21 6 2.3215 0.3484 -4.7571 22 7 2.4828 1.6455 -4.6029 23 14 2.2735 -0.3895 -6.4726 24 1 0.8725 -0.4078 -6.9645 25 1 3.1086 0.4297 -7.3873 26 1 2.8012 -1.7769 -6.4296 27 1 -0.3634 0.4858 0.9055 28 1 -0.3634 0.5413 -0.8736 29 1 -0.3633 -1.0272 -0.0320 30 1 3.1621 1.4058 -0.0320 31 1 1.6956 1.9622 -0.8736 32 1 1.7474 1.9425 0.9056 33 1 1.3129 -1.4758 1.5776 34 1 2.3736 -0.1043 1.9997 35 1 5.8835 -2.3700 0.5010 36 1 4.8216 -3.7267 0.0537 37 1 7.9421 -4.5476 4.2559 38 1 4.1947 -0.4414 -0.7928 39 1 3.8032 -2.1361 -1.2168 40 1 2.3405 1.0256 -2.2738 41 1 2.5772 2.2183 -5.3800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996506535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:27 Heat of formation + Delta-G solvation = 66.018338 kcal Electronic energy + Delta-G solvation = -23662.657275 eV Core-core repulsion = 20193.805013 eV Total energy + Delta-G solvation = -3468.852261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.21740 -39.96067 -37.94731 -34.13235 -33.48428 -33.05828 -31.77608 -30.81690 -29.31402 -27.51712 -26.98721 -25.86363 -23.92422 -22.95705 -21.67152 -20.81759 -19.01651 -18.62729 -18.30056 -17.33224 -16.85291 -16.00739 -15.54778 -15.23986 -14.91973 -14.57732 -14.06637 -13.87908 -13.66633 -13.38751 -12.95692 -12.85608 -12.67129 -12.28248 -12.14291 -11.95211 -11.85364 -11.52696 -11.27069 -11.03042 -10.91190 -10.54959 -10.46205 -10.29989 -10.21993 -10.16738 -9.96235 -9.87799 -9.69766 -9.53107 -9.00732 -8.31423 -7.08460 -5.86160 -3.16304 1.47848 2.49518 2.68795 2.83803 3.33794 3.39293 3.45503 3.46346 3.98123 4.50618 4.51268 4.69870 4.78685 5.04437 5.10485 5.20145 5.38104 5.45752 5.50540 5.62440 5.70653 5.81720 5.90218 6.00712 6.04704 6.06723 6.16609 6.20759 6.25459 6.34748 6.36672 6.44737 6.58842 6.68009 6.73986 6.86467 6.90448 7.63166 7.79684 7.94824 8.31657 8.37016 9.44439 9.98420 10.33705 11.35871 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.003818 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.120297 B = 7331.340147 C = 8393.371075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.610 5.610 6 C 0.536 3.464 7 O -0.547 6.547 8 C -0.047 4.047 9 C 0.255 3.745 10 N -0.534 5.534 11 C 0.260 3.740 12 N -0.486 5.486 13 H 0.440 0.560 14 N -0.305 5.305 15 C 0.068 3.932 16 C 0.181 3.819 17 H 0.069 0.931 18 N -0.709 5.709 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.222 0.778 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.390 0.610 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -9.500 14.256 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.191 4.191 4 C 0.000 4.000 5 N -0.344 5.344 6 C 0.323 3.677 7 O -0.425 6.425 8 C -0.089 4.089 9 C -0.028 4.028 10 N -0.262 5.262 11 C -0.039 4.039 12 N -0.204 5.204 13 H 0.286 0.714 14 N -0.134 5.134 15 C -0.058 4.058 16 C 0.069 3.931 17 H 0.087 0.913 18 N -0.351 5.351 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.238 0.762 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.227 0.773 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.258 -9.732 14.318 18.093 hybrid contribution 0.397 -0.669 -0.459 0.904 sum 5.656 -10.402 13.859 18.228 Atomic orbital electron populations 1.21683 0.93440 1.01671 1.01805 1.21884 0.96060 0.96035 0.94975 1.21715 1.01038 0.94644 1.01738 1.22023 0.87225 0.94158 0.96629 1.48415 1.29712 1.43725 1.12557 1.19739 0.83009 0.79078 0.85886 1.90691 1.70995 1.64395 1.16398 1.19883 0.96176 0.97907 0.94923 1.23359 0.92953 0.90030 0.96495 1.70365 1.16430 1.29962 1.09404 1.26054 0.96143 0.83143 0.98606 1.48075 1.27928 1.14676 1.29739 0.71449 1.77991 1.14387 1.14715 1.06270 1.23638 1.02790 1.00854 0.78472 1.21382 0.91695 0.93453 0.86616 0.91277 1.42453 1.86060 1.06581 0.99968 1.19266 1.42740 0.92717 0.83206 0.90994 1.24741 1.02303 0.95425 0.97917 1.69649 1.55981 1.02727 1.29324 0.86203 0.77465 0.78063 0.84500 1.21674 1.21758 1.20660 0.93230 0.91377 0.92866 0.92532 0.90941 0.93293 0.91790 0.91887 0.85943 0.86387 0.76175 0.90920 0.91064 0.77319 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.49 37.16 0.32 -1.54 16 2 C -0.09 -1.38 0.85 -152.68 -0.13 -1.51 16 3 C -0.13 -2.10 7.55 37.16 0.28 -1.81 16 4 C 0.12 1.89 6.04 -3.06 -0.02 1.87 16 5 N -0.61 -9.76 3.32 -170.38 -0.57 -10.33 16 6 C 0.54 8.96 7.84 -10.99 -0.09 8.87 16 7 O -0.55 -10.92 16.36 5.55 0.09 -10.83 16 8 C -0.05 -0.65 5.33 -29.04 -0.15 -0.80 16 9 C 0.25 3.79 6.63 -156.85 -1.04 2.75 16 10 N -0.53 -7.42 11.19 -11.97 -0.13 -7.55 16 11 C 0.26 2.41 13.13 -90.65 -1.19 1.22 16 12 N -0.49 -4.61 7.45 29.53 0.22 -4.39 16 13 H 0.44 2.29 8.96 -182.34 -1.63 0.65 16 14 N -0.30 -4.33 12.80 32.42 0.41 -3.91 16 15 C 0.07 1.12 6.07 -2.40 -0.01 1.11 16 16 C 0.18 3.30 2.97 -65.66 -0.20 3.10 16 17 H 0.07 1.30 7.99 -51.93 -0.41 0.88 16 18 N -0.71 -16.05 5.15 -51.23 -0.26 -16.31 16 19 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 23 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.06 0.91 7.42 -51.93 -0.39 0.53 16 31 H 0.07 1.27 6.75 -51.93 -0.35 0.92 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 34 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 35 H 0.12 1.51 8.14 -51.92 -0.42 1.09 16 36 H 0.12 1.43 7.85 -51.93 -0.41 1.02 16 37 H 0.22 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 39 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 40 H 0.39 9.33 5.45 -40.82 -0.22 9.11 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -34.38 340.71 -8.98 -43.36 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.10 Total: 7.82 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.48 Total: 6.45 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.40 Total: -68.23 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.38 -8.98 -43.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996506535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.380 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds