Wall clock time and date at job start Tue Mar 31 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.77773 * 2 1 4 4 C 1.54321 * 110.71580 * 123.23963 * 2 1 3 5 5 N 1.47025 * 107.27089 * 140.55952 * 4 2 1 6 6 C 1.34776 * 125.65280 * 181.02087 * 5 4 2 7 7 O 1.21283 * 119.99657 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00264 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47235 * 179.97438 * 8 6 5 10 10 N 1.33245 * 125.52410 * 269.69245 * 9 8 6 11 11 C 1.30832 * 109.82704 * 180.26051 * 10 9 8 12 12 N 1.34437 * 108.07767 * 0.02562 * 11 10 9 13 13 H 0.97001 * 126.82137 * 180.02562 * 12 11 10 14 14 N 1.30714 * 125.52919 * 90.00111 * 9 8 6 15 15 C 1.47429 * 108.70154 * 1.28424 * 5 4 2 16 16 C 1.55135 * 104.71872 * 335.55226 * 15 5 4 17 17 H 1.09000 * 111.22540 * 279.17367 * 16 15 5 18 18 N 1.46503 * 110.90061 * 155.27613 * 16 15 5 19 19 C 1.36938 * 120.00206 * 92.97666 * 18 16 15 20 20 H 1.08001 * 119.99626 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99936 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99651 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47166 * 90.00179 * 23 21 19 25 25 H 1.48497 * 109.47000 * 210.00203 * 23 21 19 26 26 H 1.48503 * 109.47176 * 330.00077 * 23 21 19 27 27 H 1.08996 * 109.47483 * 298.21123 * 1 2 3 28 28 H 1.09001 * 109.47313 * 58.21805 * 1 2 3 29 29 H 1.09006 * 109.47098 * 178.21319 * 1 2 3 30 30 H 1.08999 * 109.47220 * 181.78360 * 3 2 1 31 31 H 1.09001 * 109.47273 * 301.78419 * 3 2 1 32 32 H 1.09000 * 109.46900 * 61.78321 * 3 2 1 33 33 H 1.08996 * 109.88687 * 21.13787 * 4 2 1 34 34 H 1.09007 * 110.01006 * 260.04218 * 4 2 1 35 35 H 1.09008 * 109.47075 * 59.99854 * 8 6 5 36 36 H 1.08994 * 109.47339 * 300.00344 * 8 6 5 37 37 H 1.07998 * 125.96253 * 179.97438 * 11 10 9 38 38 H 1.08999 * 110.36601 * 94.47947 * 15 5 4 39 39 H 1.08994 * 110.36752 * 216.80687 * 15 5 4 40 40 H 0.97002 * 120.00089 * 272.97569 * 18 16 15 41 41 H 0.97001 * 119.99999 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7391 6 6 3.9923 -2.3836 1.4898 7 8 3.7197 -2.5558 2.6590 8 6 5.1672 -3.1009 0.8765 9 6 5.8299 -3.9629 1.9199 10 7 6.8212 -3.5807 2.7242 11 6 7.1664 -4.5722 3.5049 12 7 6.3878 -5.6273 3.2085 13 1 6.4133 -6.5035 3.6238 14 7 5.5295 -5.2084 2.1789 15 6 3.4666 -1.2455 -0.6861 16 6 2.0790 -0.7955 -1.2137 17 1 1.4449 -1.6532 -1.4379 18 7 2.2215 0.0696 -2.3875 19 6 2.1869 -0.4713 -3.6450 20 1 2.0549 -1.5357 -3.7715 21 6 2.3215 0.3484 -4.7571 22 7 2.4828 1.6455 -4.6029 23 14 2.2735 -0.3895 -6.4726 24 1 0.8725 -0.4078 -6.9645 25 1 3.1086 0.4297 -7.3873 26 1 2.8012 -1.7769 -6.4296 27 1 -0.3634 0.4858 0.9055 28 1 -0.3634 0.5413 -0.8736 29 1 -0.3633 -1.0272 -0.0320 30 1 3.1621 1.4058 -0.0320 31 1 1.6956 1.9622 -0.8736 32 1 1.7474 1.9425 0.9056 33 1 1.3129 -1.4758 1.5776 34 1 2.3736 -0.1043 1.9997 35 1 5.8835 -2.3700 0.5010 36 1 4.8216 -3.7267 0.0537 37 1 7.9421 -4.5476 4.2559 38 1 4.1947 -0.4414 -0.7928 39 1 3.8032 -2.1361 -1.2168 40 1 2.3405 1.0256 -2.2738 41 1 2.5772 2.2183 -5.3800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996506535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:25 Heat of formation + Delta-G solvation = 42.557499 kcal Electronic energy + Delta-G solvation = -23663.674613 eV Core-core repulsion = 20193.805013 eV Total energy + Delta-G solvation = -3469.869600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.09023 -41.29877 -39.32712 -35.84466 -34.73132 -34.19322 -32.72616 -32.58749 -30.35873 -29.10053 -28.25216 -27.08138 -25.76151 -23.78240 -23.09574 -21.89795 -20.24503 -19.93258 -19.22481 -19.13325 -18.12812 -17.29833 -16.79879 -16.41614 -16.05489 -15.99507 -15.63479 -15.29765 -14.98719 -14.49368 -14.38083 -14.29722 -14.11243 -13.42072 -13.32134 -13.16748 -13.05986 -12.94539 -12.81381 -12.72993 -12.55331 -12.07540 -12.02852 -11.83163 -11.50948 -11.33226 -11.24108 -11.09419 -11.01205 -10.86580 -10.63044 -9.67692 -8.96930 -7.89357 -5.17679 0.63137 1.53324 1.54111 1.54695 1.61943 1.64914 1.84425 2.17429 2.61466 3.14255 3.38519 3.42947 3.63763 3.78607 3.83870 3.90663 4.13636 4.18230 4.33460 4.40309 4.45324 4.48146 4.51007 4.69196 4.82620 4.87073 4.89745 5.04502 5.08903 5.16085 5.23224 5.23806 5.29666 5.35260 5.45659 5.53413 5.60800 6.27543 6.32260 6.47944 7.06222 7.09097 7.41106 8.13478 8.38536 9.33545 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.003818 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.120297 B = 7331.340147 C = 8393.371075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.128 4.128 4 C 0.124 3.876 5 N -0.608 5.608 6 C 0.536 3.464 7 O -0.581 6.581 8 C -0.044 4.044 9 C 0.236 3.764 10 N -0.576 5.576 11 C 0.276 3.724 12 N -0.474 5.474 13 H 0.458 0.542 14 N -0.339 5.339 15 C 0.081 3.919 16 C 0.174 3.826 17 H 0.066 0.934 18 N -0.718 5.718 19 C -0.240 4.240 20 H 0.079 0.921 21 C -0.067 4.067 22 N -0.966 5.966 23 Si 0.965 3.035 24 H -0.292 1.292 25 H -0.300 1.300 26 H -0.269 1.269 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.276 0.724 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.382 0.618 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 -10.995 15.546 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.081 4.081 3 C -0.185 4.185 4 C 0.002 3.998 5 N -0.340 5.340 6 C 0.325 3.675 7 O -0.461 6.461 8 C -0.086 4.086 9 C -0.048 4.048 10 N -0.305 5.305 11 C -0.022 4.022 12 N -0.194 5.194 13 H 0.307 0.693 14 N -0.169 5.169 15 C -0.045 4.045 16 C 0.063 3.937 17 H 0.084 0.916 18 N -0.359 5.359 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.260 4.260 22 N -0.616 5.616 23 Si 0.795 3.205 24 H -0.219 1.219 25 H -0.227 1.227 26 H -0.194 1.194 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.291 0.709 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.217 0.783 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.895 -11.298 15.646 20.179 hybrid contribution 0.220 -0.284 -0.703 0.789 sum 6.115 -11.582 14.944 19.871 Atomic orbital electron populations 1.21651 0.92330 1.02111 1.02115 1.21816 0.96918 0.95653 0.93679 1.21647 1.00401 0.94628 1.01857 1.22031 0.87210 0.94222 0.96369 1.48409 1.29811 1.43603 1.12213 1.20187 0.83299 0.78613 0.85421 1.90665 1.72035 1.65533 1.17897 1.19904 0.95260 0.98212 0.95195 1.23464 0.93709 0.90400 0.97208 1.70335 1.17229 1.32167 1.10804 1.27052 0.95725 0.81654 0.97753 1.48000 1.26980 1.15762 1.28643 0.69264 1.77863 1.16105 1.14824 1.08139 1.23348 1.01201 1.01145 0.78785 1.21534 0.92777 0.93160 0.86274 0.91635 1.42539 1.86223 1.06698 1.00436 1.19635 1.40162 0.92979 0.84370 0.90330 1.25427 1.03591 0.95824 1.01151 1.69791 1.58350 1.03862 1.29582 0.85263 0.76932 0.77696 0.80582 1.21901 1.22680 1.19352 0.90893 0.93222 0.92232 0.93353 0.93127 0.90904 0.91290 0.91453 0.84742 0.84959 0.70881 0.91517 0.89879 0.78251 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.49 71.98 0.61 -2.81 16 2 C -0.08 -2.39 0.85 -50.99 -0.04 -2.44 16 3 C -0.13 -3.92 7.55 71.98 0.54 -3.38 16 4 C 0.12 3.65 6.04 86.73 0.52 4.17 16 5 N -0.61 -18.71 3.32 -811.34 -2.70 -21.41 16 6 C 0.54 17.43 7.84 87.65 0.69 18.12 16 7 O -0.58 -22.84 16.36 -3.04 -0.05 -22.89 16 8 C -0.04 -1.18 5.33 29.10 0.16 -1.02 16 9 C 0.24 6.76 6.63 138.63 0.92 7.68 16 10 N -0.58 -15.14 11.19 -191.80 -2.15 -17.28 16 11 C 0.28 4.36 13.13 180.36 2.37 6.72 16 12 N -0.47 -7.96 7.45 -60.49 -0.45 -8.41 16 13 H 0.46 3.64 8.96 -213.10 -1.91 1.73 16 14 N -0.34 -9.25 12.80 -51.33 -0.66 -9.91 16 15 C 0.08 2.57 6.07 86.93 0.53 3.09 16 16 C 0.17 6.19 2.97 46.46 0.14 6.33 16 17 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 18 N -0.72 -32.54 5.15 -316.01 -1.63 -34.16 16 19 C -0.24 -12.21 9.96 84.03 0.84 -11.37 16 20 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 21 C -0.07 -3.62 5.50 84.86 0.47 -3.16 16 22 N -0.97 -55.96 13.06 21.65 0.28 -55.67 16 23 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.55 8.13 -2.38 -0.02 1.53 16 30 H 0.05 1.54 7.42 -2.39 -0.02 1.52 16 31 H 0.05 1.78 6.75 -2.39 -0.02 1.77 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.98 7.82 -2.39 -0.02 1.96 16 34 H 0.07 1.95 7.85 -2.38 -0.02 1.93 16 35 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 36 H 0.13 3.06 7.85 -2.39 -0.02 3.04 16 37 H 0.28 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.07 2.24 7.69 -2.39 -0.02 2.22 16 39 H 0.08 2.45 7.48 -2.39 -0.02 2.43 16 40 H 0.38 18.58 5.45 -92.71 -0.51 18.08 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -74.71 340.71 1.06 -73.65 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -1.35 Total: 28.12 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 7.73 Total: 21.94 kcal Atomic # 7 Polarization: -139.55 SS G_CDS: -7.29 Total: -146.84 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.71 1.06 -73.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996506535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.209 kcal (2) G-P(sol) polarization free energy of solvation -74.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds