Wall clock time and date at job start Tue Mar 31 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 110.77834 * 2 1 4 4 C 1.54326 * 110.71818 * 123.23919 * 2 1 3 5 5 N 1.47022 * 107.26675 * 140.55568 * 4 2 1 6 6 C 1.34781 * 125.64612 * 181.02057 * 5 4 2 7 7 O 1.21279 * 119.99627 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.46495 * 109.47024 * 179.97438 * 8 6 5 10 10 C 1.34428 * 126.82196 * 125.00025 * 9 8 6 11 11 N 1.30834 * 108.08033 * 180.02562 * 10 9 8 12 12 C 1.33241 * 109.82716 * 0.02562 * 11 10 9 13 13 N 1.30718 * 108.94820 * 359.97438 * 12 11 10 14 14 C 1.47429 * 108.70663 * 1.29026 * 5 4 2 15 15 C 1.55131 * 104.71693 * 335.55200 * 14 5 4 16 16 H 1.09005 * 111.22171 * 279.17097 * 15 14 5 17 17 N 1.46497 * 110.90264 * 155.27750 * 15 14 5 18 18 C 1.36939 * 120.00116 * 92.97106 * 17 15 14 19 19 H 1.08001 * 120.00022 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99840 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00220 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99801 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47307 * 60.00056 * 22 20 18 24 24 H 1.48501 * 109.46890 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46961 * 300.00099 * 22 20 18 26 26 H 1.08996 * 109.47078 * 298.21254 * 1 2 3 27 27 H 1.08997 * 109.46862 * 58.21522 * 1 2 3 28 28 H 1.09002 * 109.47138 * 178.20907 * 1 2 3 29 29 H 1.08995 * 109.47021 * 181.78232 * 3 2 1 30 30 H 1.08995 * 109.47445 * 301.78800 * 3 2 1 31 31 H 1.09009 * 109.46972 * 61.78448 * 3 2 1 32 32 H 1.08994 * 109.88081 * 21.14492 * 4 2 1 33 33 H 1.08995 * 110.01034 * 260.04492 * 4 2 1 34 34 H 1.09004 * 109.46813 * 60.00131 * 8 6 5 35 35 H 1.09000 * 109.47126 * 299.99980 * 8 6 5 36 36 H 1.08001 * 125.96455 * 359.97438 * 10 9 8 37 37 H 1.08002 * 125.52885 * 180.02562 * 12 11 10 38 38 H 1.09004 * 110.36416 * 94.47760 * 14 5 4 39 39 H 1.08999 * 110.36497 * 216.80357 * 14 5 4 40 40 H 0.97000 * 120.00516 * 272.97133 * 17 15 14 41 41 H 0.96999 * 120.00251 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7390 6 6 3.9923 -2.3836 1.4897 7 8 3.7192 -2.5564 2.6586 8 6 5.1678 -3.1001 0.8766 9 7 5.8120 -3.9382 1.8909 10 6 6.0556 -5.2577 1.8095 11 7 6.6431 -5.6312 2.9173 12 6 6.7904 -4.5829 3.7264 13 7 6.2969 -3.5230 3.1419 14 6 3.4666 -1.2455 -0.6862 15 6 2.0790 -0.7953 -1.2138 16 1 1.4449 -1.6532 -1.4380 17 7 2.2215 0.0697 -2.3874 18 6 2.1869 -0.4712 -3.6450 19 1 2.0541 -1.5355 -3.7716 20 6 2.3214 0.3486 -4.7571 21 7 2.4828 1.6457 -4.6029 22 14 2.2735 -0.3892 -6.4726 23 1 0.9697 -1.0683 -6.6832 24 1 2.4388 0.6893 -7.4800 25 1 3.3744 -1.3751 -6.6183 26 1 -0.3633 0.4858 0.9055 27 1 -0.3633 0.5413 -0.8735 28 1 -0.3633 -1.0272 -0.0321 29 1 3.1620 1.4058 -0.0320 30 1 1.6956 1.9623 -0.8735 31 1 1.7474 1.9426 0.9056 32 1 1.3130 -1.4759 1.5775 33 1 2.3736 -0.1044 1.9996 34 1 5.8839 -2.3687 0.5019 35 1 4.8229 -3.7257 0.0534 36 1 5.8086 -5.8981 0.9756 37 1 7.2446 -4.6052 4.7060 38 1 4.1948 -0.4413 -0.7928 39 1 3.8032 -2.1361 -1.2169 40 1 2.3405 1.0257 -2.2739 41 1 2.5772 2.2185 -5.3799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996583064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:32 Heat of formation + Delta-G solvation = 79.694250 kcal Electronic energy + Delta-G solvation = -23767.724723 eV Core-core repulsion = 20299.465494 eV Total energy + Delta-G solvation = -3468.259229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13164 -40.14417 -38.13418 -34.28903 -34.12108 -33.24885 -31.26090 -30.93481 -28.74396 -27.66242 -27.09411 -25.80864 -24.04783 -22.37644 -22.05401 -21.54904 -19.38494 -18.73692 -17.61641 -17.35242 -16.94067 -16.08209 -15.61512 -15.43861 -14.71261 -14.69107 -14.22673 -14.07165 -13.97951 -13.77641 -13.24307 -13.01746 -12.83855 -12.62773 -12.15556 -12.11869 -11.88091 -11.64481 -11.38874 -11.12855 -10.98908 -10.68667 -10.57282 -10.35171 -10.31146 -10.10661 -10.01421 -9.83690 -9.79367 -9.55984 -9.10884 -8.51427 -7.19739 -5.95577 -3.26655 1.53582 2.07182 2.53687 2.90761 3.02874 3.32044 3.37566 3.38782 4.19675 4.23498 4.39549 4.47823 4.75529 4.81350 4.85305 4.95282 5.07973 5.18524 5.38906 5.49288 5.52665 5.68203 5.77064 5.88568 5.94021 6.02938 6.04115 6.09661 6.20419 6.22186 6.29234 6.36228 6.44212 6.53256 6.61603 6.64856 6.77338 7.52022 7.56162 7.98563 8.11459 8.22432 9.34628 9.87697 10.22675 11.26155 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.003886 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.735403 B = 7202.945594 C = 8334.590368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.609 5.609 6 C 0.514 3.486 7 O -0.526 6.526 8 C 0.115 3.885 9 N -0.366 5.366 10 C 0.254 3.746 11 N -0.547 5.547 12 C 0.188 3.812 13 N -0.289 5.289 14 C 0.065 3.935 15 C 0.183 3.817 16 H 0.070 0.930 17 N -0.709 5.709 18 C -0.253 4.253 19 H 0.072 0.928 20 C -0.005 4.005 21 N -0.928 5.928 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.219 0.781 37 H 0.215 0.785 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.390 0.610 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -7.648 9.731 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.192 4.192 4 C 0.000 4.000 5 N -0.344 5.344 6 C 0.299 3.701 7 O -0.401 6.401 8 C -0.012 4.012 9 N -0.157 5.157 10 C -0.043 4.043 11 N -0.275 5.275 12 C -0.115 4.115 13 N -0.116 5.116 14 C -0.061 4.061 15 C 0.069 3.931 16 H 0.088 0.912 17 N -0.350 5.350 18 C -0.384 4.384 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.738 3.262 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.235 0.765 37 H 0.232 0.768 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.227 0.773 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.946 -7.408 10.547 13.221 hybrid contribution 0.016 -0.073 -1.297 1.299 sum 2.961 -7.482 9.250 12.260 Atomic orbital electron populations 1.21684 0.93294 1.01721 1.01932 1.21891 0.96174 0.96038 0.94813 1.21721 1.00963 0.94629 1.01872 1.22052 0.86969 0.94175 0.96758 1.48448 1.29747 1.43599 1.12567 1.19960 0.83541 0.80145 0.86449 1.90769 1.69973 1.63649 1.15758 1.21599 0.94872 0.96217 0.88474 1.50016 1.44206 1.07765 1.13753 1.26073 0.95775 0.83885 0.98552 1.70516 1.22658 1.31389 1.02902 1.25996 0.99041 0.85638 1.00814 1.78194 1.17221 1.23707 0.92481 1.23710 1.03279 1.00794 0.78276 1.21361 0.91460 0.93543 0.86687 0.91212 1.42450 1.86010 1.06581 0.99940 1.19202 1.43354 0.92684 0.83172 0.91042 1.24757 1.02050 0.95407 0.97994 1.69635 1.55537 1.02746 1.29604 0.86273 0.77922 0.77833 0.84132 1.21127 1.21628 1.21139 0.93147 0.91294 0.92838 0.92605 0.90858 0.93208 0.91644 0.91744 0.86242 0.85086 0.76457 0.76836 0.90830 0.91176 0.77279 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.49 37.16 0.32 -1.42 16 2 C -0.09 -1.27 0.85 -152.67 -0.13 -1.40 16 3 C -0.13 -1.98 7.55 37.16 0.28 -1.70 16 4 C 0.12 1.74 6.04 -3.06 -0.02 1.72 16 5 N -0.61 -8.61 3.33 -170.38 -0.57 -9.17 16 6 C 0.51 7.51 7.89 -10.98 -0.09 7.42 16 7 O -0.53 -9.77 16.07 5.56 0.09 -9.68 16 8 C 0.11 1.23 6.03 -5.20 -0.03 1.20 16 9 N -0.37 -4.62 3.41 -63.81 -0.22 -4.84 16 10 C 0.25 2.72 12.63 -90.65 -1.14 1.58 16 11 N -0.55 -7.00 11.19 -15.83 -0.18 -7.18 16 12 C 0.19 2.40 13.03 -91.81 -1.20 1.20 16 13 N -0.29 -4.32 11.82 29.29 0.35 -3.98 16 14 C 0.07 0.95 6.07 -2.41 -0.01 0.93 16 15 C 0.18 3.06 2.97 -65.67 -0.20 2.87 16 16 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 17 N -0.71 -15.21 5.15 -51.24 -0.26 -15.47 16 18 C -0.25 -6.20 9.96 -15.06 -0.15 -6.35 16 19 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 20 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.93 -25.67 13.06 55.49 0.72 -24.94 16 22 Si 0.91 20.57 29.55 -169.99 -5.02 15.54 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.69 8.13 -51.93 -0.42 0.26 16 29 H 0.05 0.85 7.42 -51.93 -0.39 0.46 16 30 H 0.07 1.22 6.75 -51.93 -0.35 0.87 16 31 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 33 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 34 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.13 0.93 7.80 -51.93 -0.40 0.53 16 36 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.22 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 39 H 0.07 0.90 7.48 -51.93 -0.39 0.52 16 40 H 0.39 8.95 5.45 -40.82 -0.22 8.73 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -32.82 341.08 -8.30 -41.12 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.88 Total: 7.65 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.47 Total: 5.81 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -0.15 Total: -65.58 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.82 -8.30 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.812 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds