Wall clock time and date at job start Tue Mar 31 2020 03:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 110.77834 * 2 1 4 4 C 1.54326 * 110.71818 * 123.23919 * 2 1 3 5 5 N 1.47022 * 107.26675 * 140.55568 * 4 2 1 6 6 C 1.34781 * 125.64612 * 181.02057 * 5 4 2 7 7 O 1.21279 * 119.99627 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.46495 * 109.47024 * 179.97438 * 8 6 5 10 10 C 1.34428 * 126.82196 * 125.00025 * 9 8 6 11 11 N 1.30834 * 108.08033 * 180.02562 * 10 9 8 12 12 C 1.33241 * 109.82716 * 0.02562 * 11 10 9 13 13 N 1.30718 * 108.94820 * 359.97438 * 12 11 10 14 14 C 1.47429 * 108.70663 * 1.29026 * 5 4 2 15 15 C 1.55131 * 104.71693 * 335.55200 * 14 5 4 16 16 H 1.09005 * 111.22171 * 279.17097 * 15 14 5 17 17 N 1.46497 * 110.90264 * 155.27750 * 15 14 5 18 18 C 1.36939 * 120.00116 * 92.97106 * 17 15 14 19 19 H 1.08001 * 120.00022 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99840 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00220 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99801 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47307 * 60.00056 * 22 20 18 24 24 H 1.48501 * 109.46890 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46961 * 300.00099 * 22 20 18 26 26 H 1.08996 * 109.47078 * 298.21254 * 1 2 3 27 27 H 1.08997 * 109.46862 * 58.21522 * 1 2 3 28 28 H 1.09002 * 109.47138 * 178.20907 * 1 2 3 29 29 H 1.08995 * 109.47021 * 181.78232 * 3 2 1 30 30 H 1.08995 * 109.47445 * 301.78800 * 3 2 1 31 31 H 1.09009 * 109.46972 * 61.78448 * 3 2 1 32 32 H 1.08994 * 109.88081 * 21.14492 * 4 2 1 33 33 H 1.08995 * 110.01034 * 260.04492 * 4 2 1 34 34 H 1.09004 * 109.46813 * 60.00131 * 8 6 5 35 35 H 1.09000 * 109.47126 * 299.99980 * 8 6 5 36 36 H 1.08001 * 125.96455 * 359.97438 * 10 9 8 37 37 H 1.08002 * 125.52885 * 180.02562 * 12 11 10 38 38 H 1.09004 * 110.36416 * 94.47760 * 14 5 4 39 39 H 1.08999 * 110.36497 * 216.80357 * 14 5 4 40 40 H 0.97000 * 120.00516 * 272.97133 * 17 15 14 41 41 H 0.96999 * 120.00251 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7390 6 6 3.9923 -2.3836 1.4897 7 8 3.7192 -2.5564 2.6586 8 6 5.1678 -3.1001 0.8766 9 7 5.8120 -3.9382 1.8909 10 6 6.0556 -5.2577 1.8095 11 7 6.6431 -5.6312 2.9173 12 6 6.7904 -4.5829 3.7264 13 7 6.2969 -3.5230 3.1419 14 6 3.4666 -1.2455 -0.6862 15 6 2.0790 -0.7953 -1.2138 16 1 1.4449 -1.6532 -1.4380 17 7 2.2215 0.0697 -2.3874 18 6 2.1869 -0.4712 -3.6450 19 1 2.0541 -1.5355 -3.7716 20 6 2.3214 0.3486 -4.7571 21 7 2.4828 1.6457 -4.6029 22 14 2.2735 -0.3892 -6.4726 23 1 0.9697 -1.0683 -6.6832 24 1 2.4388 0.6893 -7.4800 25 1 3.3744 -1.3751 -6.6183 26 1 -0.3633 0.4858 0.9055 27 1 -0.3633 0.5413 -0.8735 28 1 -0.3633 -1.0272 -0.0321 29 1 3.1620 1.4058 -0.0320 30 1 1.6956 1.9623 -0.8735 31 1 1.7474 1.9426 0.9056 32 1 1.3130 -1.4759 1.5775 33 1 2.3736 -0.1044 1.9996 34 1 5.8839 -2.3687 0.5019 35 1 4.8229 -3.7257 0.0534 36 1 5.8086 -5.8981 0.9756 37 1 7.2446 -4.6052 4.7060 38 1 4.1948 -0.4413 -0.7928 39 1 3.8032 -2.1361 -1.2169 40 1 2.3405 1.0257 -2.2739 41 1 2.5772 2.2185 -5.3799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996583064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:30 Heat of formation + Delta-G solvation = 59.561691 kcal Electronic energy + Delta-G solvation = -23768.597736 eV Core-core repulsion = 20299.465494 eV Total energy + Delta-G solvation = -3469.132243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -43.01223 -41.33939 -39.37903 -35.87069 -35.10238 -34.53216 -32.62973 -32.16852 -29.72718 -29.10278 -28.28677 -26.88127 -25.77038 -23.43058 -22.89881 -22.79983 -20.49193 -20.02974 -19.18509 -18.47801 -17.98167 -17.22415 -16.82088 -16.52845 -16.17981 -15.78727 -15.50160 -15.31762 -15.03112 -14.92126 -14.45626 -14.39611 -14.19177 -13.69560 -13.37220 -13.34869 -12.95249 -12.82833 -12.81675 -12.73681 -12.57280 -12.12434 -12.06578 -11.86906 -11.53072 -11.39674 -11.29444 -11.02241 -10.87337 -10.77837 -10.55978 -9.73033 -8.98355 -7.89898 -5.18487 0.67369 1.24764 1.43651 1.54554 1.55420 1.61186 1.93243 2.04752 2.60815 3.19230 3.41287 3.52904 3.59201 3.67039 3.79862 3.87102 4.04026 4.09357 4.14421 4.32063 4.38386 4.42238 4.44865 4.65279 4.78881 4.82798 4.85994 4.99353 5.05698 5.11805 5.20922 5.22871 5.29910 5.42162 5.48982 5.50039 5.60196 5.85374 6.31145 6.41568 6.98082 7.12117 7.40334 8.13072 8.36771 9.32839 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.003886 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.735403 B = 7202.945594 C = 8334.590368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.080 4.080 3 C -0.128 4.128 4 C 0.126 3.874 5 N -0.606 5.606 6 C 0.512 3.488 7 O -0.569 6.569 8 C 0.116 3.884 9 N -0.377 5.377 10 C 0.264 3.736 11 N -0.574 5.574 12 C 0.186 3.814 13 N -0.339 5.339 14 C 0.078 3.922 15 C 0.174 3.826 16 H 0.070 0.930 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.967 5.967 22 Si 0.965 3.035 23 H -0.281 1.281 24 H -0.304 1.304 25 H -0.275 1.275 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.175 0.825 36 H 0.266 0.734 37 H 0.238 0.762 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.381 0.619 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -9.688 9.664 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.081 4.081 3 C -0.186 4.186 4 C 0.003 3.997 5 N -0.339 5.339 6 C 0.299 3.701 7 O -0.447 6.447 8 C -0.009 4.009 9 N -0.168 5.168 10 C -0.032 4.032 11 N -0.302 5.302 12 C -0.117 4.117 13 N -0.166 5.166 14 C -0.047 4.047 15 C 0.063 3.937 16 H 0.088 0.912 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.260 4.260 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.207 1.207 24 H -0.231 1.231 25 H -0.201 1.201 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.192 0.808 36 H 0.282 0.718 37 H 0.254 0.746 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.216 0.784 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.118 -9.492 10.501 14.494 hybrid contribution -0.077 0.510 -1.177 1.285 sum 3.042 -8.982 9.323 13.298 Atomic orbital electron populations 1.21651 0.92423 1.02197 1.01997 1.21818 0.96857 0.95542 0.93914 1.21648 1.00347 0.94864 1.01733 1.21996 0.87257 0.94193 0.96263 1.48441 1.29700 1.43460 1.12309 1.20624 0.83970 0.79577 0.85887 1.90756 1.71274 1.65037 1.17678 1.21838 0.93338 0.97065 0.88633 1.50114 1.44589 1.08602 1.13464 1.27027 0.93669 0.83534 0.98926 1.70547 1.23963 1.31755 1.03895 1.26536 0.98217 0.85279 1.01627 1.78117 1.18979 1.25333 0.94188 1.23409 1.01185 1.01589 0.78502 1.21538 0.92917 0.93189 0.86037 0.91221 1.42559 1.86219 1.06704 1.00512 1.19616 1.40192 0.93079 0.84237 0.89943 1.25438 1.03614 0.95769 1.01209 1.69786 1.58328 1.03945 1.29669 0.85341 0.78107 0.76758 0.80282 1.20750 1.23089 1.20116 0.91184 0.93269 0.92012 0.93382 0.93157 0.91224 0.91200 0.91957 0.84953 0.80754 0.71842 0.74596 0.91697 0.88717 0.78391 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.49 71.98 0.61 -2.60 16 2 C -0.08 -2.21 0.85 -50.99 -0.04 -2.26 16 3 C -0.13 -3.73 7.55 71.98 0.54 -3.19 16 4 C 0.13 3.34 6.04 86.73 0.52 3.87 16 5 N -0.61 -15.79 3.33 -811.34 -2.70 -18.49 16 6 C 0.51 13.89 7.89 87.66 0.69 14.58 16 7 O -0.57 -20.55 16.07 -3.03 -0.05 -20.60 16 8 C 0.12 2.13 6.03 85.63 0.52 2.65 16 9 N -0.38 -8.62 3.41 -355.81 -1.21 -9.83 16 10 C 0.26 4.86 12.63 180.36 2.28 7.14 16 11 N -0.57 -13.59 11.19 -203.99 -2.28 -15.87 16 12 C 0.19 4.55 13.03 180.76 2.36 6.91 16 13 N -0.34 -9.82 11.82 -61.24 -0.72 -10.55 16 14 C 0.08 2.08 6.07 86.93 0.53 2.61 16 15 C 0.17 5.56 2.97 46.46 0.14 5.70 16 16 H 0.07 2.25 7.99 -2.38 -0.02 2.23 16 17 N -0.72 -30.47 5.15 -316.02 -1.63 -32.09 16 18 C -0.24 -11.48 9.96 84.03 0.84 -10.64 16 19 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 20 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 21 N -0.97 -54.41 13.06 21.65 0.28 -54.13 16 22 Si 0.97 42.06 29.55 68.60 2.03 44.09 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 29 H 0.05 1.45 7.42 -2.39 -0.02 1.43 16 30 H 0.05 1.70 6.75 -2.39 -0.02 1.69 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 32 H 0.07 1.82 7.82 -2.39 -0.02 1.80 16 33 H 0.06 1.71 7.85 -2.39 -0.02 1.69 16 34 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.18 1.60 7.80 -2.39 -0.02 1.58 16 36 H 0.27 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.24 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.06 1.89 7.69 -2.39 -0.02 1.87 16 39 H 0.09 2.07 7.48 -2.39 -0.02 2.05 16 40 H 0.38 17.66 5.45 -92.71 -0.51 17.15 16 41 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -72.18 341.08 3.70 -68.48 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.53 Total: 27.24 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 9.45 Total: 21.75 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -8.26 Total: -140.96 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -72.18 3.70 -68.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.046 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds