Wall clock time and date at job start Tue Mar 31 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.38660 * 2 1 4 4 C 1.54391 * 110.34123 * 237.77292 * 2 1 3 5 5 N 1.48150 * 104.61300 * 264.99083 * 4 2 1 6 6 C 1.34779 * 127.83567 * 140.38921 * 5 4 2 7 7 O 1.21286 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.50690 * 120.00024 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47225 * 180.02562 * 8 6 5 10 10 C 1.34431 * 126.82252 * 124.71121 * 9 8 6 11 11 N 1.30841 * 108.07470 * 179.89352 * 10 9 8 12 12 C 1.33238 * 109.82734 * 0.38242 * 11 10 9 13 13 N 1.30715 * 108.95198 * 359.75935 * 12 11 10 14 14 C 1.48415 * 104.33809 * 320.38760 * 5 4 2 15 15 C 1.54281 * 110.34627 * 122.23200 * 2 1 3 16 16 H 1.09002 * 110.34289 * 359.97438 * 15 2 1 17 17 N 1.46501 * 110.34308 * 237.84910 * 15 2 1 18 18 C 1.36932 * 120.00202 * 156.47696 * 17 15 2 19 19 H 1.08004 * 120.00142 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00464 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99375 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00370 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46847 * 59.99943 * 22 20 18 24 24 H 1.48498 * 109.47015 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47218 * 299.99931 * 22 20 18 26 26 H 1.08998 * 109.46945 * 297.76612 * 1 2 3 27 27 H 1.09000 * 109.47393 * 57.77036 * 1 2 3 28 28 H 1.08997 * 109.46826 * 177.76947 * 1 2 3 29 29 H 1.09001 * 109.47416 * 182.23800 * 3 2 1 30 30 H 1.09004 * 109.47417 * 302.23193 * 3 2 1 31 31 H 1.08998 * 109.47229 * 62.23076 * 3 2 1 32 32 H 1.08999 * 110.40947 * 23.77844 * 4 2 1 33 33 H 1.09001 * 110.40962 * 146.09243 * 4 2 1 34 34 H 1.09002 * 109.47556 * 300.00158 * 8 6 5 35 35 H 1.09003 * 109.47144 * 60.00161 * 8 6 5 36 36 H 1.07994 * 125.96462 * 0.03784 * 10 9 8 37 37 H 1.08002 * 125.52306 * 179.73074 * 12 11 10 38 38 H 1.08997 * 110.44874 * 280.87091 * 14 5 4 39 39 H 1.09004 * 110.48780 * 158.35620 * 14 5 4 40 40 H 0.97004 * 119.99809 * 336.46810 * 17 15 2 41 41 H 0.96999 * 119.99854 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3140 -2.1438 -0.7227 6 6 2.0770 -3.3105 -1.3544 7 8 1.6053 -3.3102 -2.4718 8 6 2.3991 -4.6153 -0.6729 9 7 2.0531 -5.7283 -1.5605 10 6 2.8675 -6.7173 -1.9677 11 7 2.1817 -7.5125 -2.7482 12 6 0.9339 -7.0613 -2.8691 13 7 0.8063 -5.9706 -2.1600 14 6 2.8820 -1.9421 0.6336 15 6 2.0664 -0.7715 1.2236 16 1 1.2399 -1.1501 1.8250 17 7 2.9289 0.0931 2.0328 18 6 3.1221 -0.1819 3.3603 19 1 2.6384 -1.0359 3.8109 20 6 3.9389 0.6377 4.1272 21 7 4.5280 1.6788 3.5782 22 14 4.2019 0.2630 5.9382 23 1 4.8095 -1.0845 6.0816 24 1 5.1095 1.2800 6.5273 25 1 2.8963 0.2951 6.6450 26 1 -0.3633 0.4787 0.9093 27 1 -0.3634 0.5481 -0.8693 28 1 -0.3633 -1.0269 -0.0400 29 1 3.1521 1.4171 -0.0401 30 1 1.6758 1.9657 -0.8693 31 1 1.7408 1.9416 0.9093 32 1 1.3223 -0.7869 -2.0207 33 1 2.9938 -0.3228 -1.5807 34 1 3.4639 -4.6520 -0.4429 35 1 1.8250 -4.6944 0.2503 36 1 3.9060 -6.8361 -1.6960 37 1 0.1544 -7.5218 -3.4579 38 1 3.9369 -1.6759 0.5689 39 1 2.7518 -2.8392 1.2389 40 1 3.3632 0.8604 1.6282 41 1 5.0990 2.2513 4.1140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996583067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:35 Heat of formation + Delta-G solvation = 87.590307 kcal Electronic energy + Delta-G solvation = -23828.307124 eV Core-core repulsion = 20360.390294 eV Total energy + Delta-G solvation = -3467.916831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13924 -40.07042 -38.13594 -34.25574 -34.11976 -33.21549 -31.27039 -30.91618 -28.77759 -27.71353 -26.95813 -25.73322 -23.98012 -22.37842 -22.06486 -21.71462 -19.41056 -18.58530 -17.64654 -17.31867 -16.91006 -15.99800 -15.64562 -15.31844 -14.79829 -14.58771 -14.29128 -14.08391 -13.97275 -13.88933 -13.40810 -12.93142 -12.71329 -12.60413 -12.08256 -11.90881 -11.79061 -11.66931 -11.31252 -11.05101 -10.99219 -10.64394 -10.56601 -10.33441 -10.30936 -10.11611 -9.98314 -9.84413 -9.74914 -9.54579 -9.11851 -8.56728 -7.15985 -5.93218 -3.23731 1.52323 2.06040 2.54025 2.89779 3.00808 3.33275 3.38857 3.39866 4.18834 4.22879 4.41469 4.46977 4.74634 4.81343 4.90212 4.98816 5.10770 5.18068 5.38618 5.53112 5.55485 5.71127 5.78300 5.90372 5.94428 6.03703 6.08261 6.14242 6.17588 6.24852 6.32305 6.35945 6.41017 6.52126 6.62233 6.74573 6.84849 7.54578 7.61495 7.97651 8.11608 8.25337 9.37291 9.91303 10.26080 11.28681 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003840 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.588424 B = 7290.532728 C = 8302.698532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.120 3.880 5 N -0.616 5.616 6 C 0.520 3.480 7 O -0.527 6.527 8 C 0.114 3.886 9 N -0.366 5.366 10 C 0.254 3.746 11 N -0.547 5.547 12 C 0.188 3.812 13 N -0.289 5.289 14 C 0.071 3.929 15 C 0.176 3.824 16 H 0.064 0.936 17 N -0.715 5.715 18 C -0.251 4.251 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.219 0.781 37 H 0.215 0.785 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.391 0.609 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -9.897 -8.279 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.188 4.188 4 C -0.003 4.003 5 N -0.351 5.351 6 C 0.306 3.694 7 O -0.403 6.403 8 C -0.012 4.012 9 N -0.157 5.157 10 C -0.043 4.043 11 N -0.275 5.275 12 C -0.115 4.115 13 N -0.115 5.115 14 C -0.055 4.055 15 C 0.063 3.937 16 H 0.082 0.918 17 N -0.358 5.358 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.235 0.765 37 H 0.232 0.768 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.229 0.771 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.198 -9.836 -8.781 13.838 hybrid contribution 0.717 0.145 1.145 1.359 sum -3.481 -9.691 -7.636 12.820 Atomic orbital electron populations 1.21789 0.94022 1.01289 1.01706 1.21752 0.95851 0.96284 0.95017 1.21688 1.01175 0.94094 1.01892 1.22449 1.00665 0.80380 0.96778 1.49040 1.62256 1.05074 1.18735 1.19873 0.79362 0.84016 0.86194 1.90773 1.44150 1.86493 1.18840 1.21584 1.04029 0.83140 0.92415 1.50020 1.08426 1.20548 1.36755 1.26070 0.98870 0.85723 0.93651 1.70517 1.05165 1.30693 1.21081 1.25997 0.94810 0.91822 0.98860 1.78200 1.01172 1.17990 1.14152 1.23858 0.99753 1.01313 0.80532 1.21099 0.92623 0.89526 0.90413 0.91838 1.42724 1.54926 1.30955 1.07212 1.19202 1.24032 1.09224 0.85759 0.91155 1.24746 0.99877 0.97464 0.98239 1.69638 1.35028 1.17271 1.35702 0.86280 0.77638 0.77278 0.85011 1.21188 1.21655 1.21179 0.92068 0.93008 0.93086 0.91944 0.93570 0.90788 0.90486 0.91099 0.85158 0.86232 0.76479 0.76831 0.90049 0.91226 0.77067 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.24 37.16 0.31 -1.49 16 2 C -0.09 -1.30 1.03 -153.11 -0.16 -1.45 16 3 C -0.13 -2.00 7.11 37.16 0.26 -1.74 16 4 C 0.12 1.72 6.14 -2.41 -0.01 1.70 16 5 N -0.62 -8.69 3.32 -169.08 -0.56 -9.26 16 6 C 0.52 7.54 7.95 -10.99 -0.09 7.45 16 7 O -0.53 -9.75 16.01 5.55 0.09 -9.66 16 8 C 0.11 1.20 6.02 -5.20 -0.03 1.17 16 9 N -0.37 -4.55 3.41 -63.82 -0.22 -4.77 16 10 C 0.25 2.67 12.63 -90.64 -1.14 1.53 16 11 N -0.55 -6.92 11.19 -15.83 -0.18 -7.10 16 12 C 0.19 2.37 13.03 -91.81 -1.20 1.18 16 13 N -0.29 -4.27 11.82 29.29 0.35 -3.92 16 14 C 0.07 1.03 6.65 -2.26 -0.02 1.01 16 15 C 0.18 2.99 3.33 -66.53 -0.22 2.77 16 16 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 17 N -0.72 -15.47 4.61 -52.07 -0.24 -15.71 16 18 C -0.25 -6.20 9.96 -15.06 -0.15 -6.35 16 19 H 0.07 1.68 7.83 -52.48 -0.41 1.26 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -25.78 13.06 55.49 0.72 -25.05 16 22 Si 0.91 20.72 29.55 -169.99 -5.02 15.69 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.02 6.95 -51.93 -0.36 0.66 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 32 H 0.08 1.14 7.60 -51.93 -0.39 0.74 16 33 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 34 H 0.13 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.12 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.22 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.22 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 39 H 0.07 0.87 7.32 -51.93 -0.38 0.49 16 40 H 0.39 8.98 5.05 -40.82 -0.21 8.77 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -33.00 340.94 -8.35 -41.35 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.88 Total: 7.76 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -2.54 Total: 5.52 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.13 Total: -65.81 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.00 -8.35 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.940 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds