Wall clock time and date at job start Tue Mar 31 2020 03:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.38660 * 2 1 4 4 C 1.54391 * 110.34123 * 237.77292 * 2 1 3 5 5 N 1.48150 * 104.61300 * 264.99083 * 4 2 1 6 6 C 1.34779 * 127.83567 * 140.38921 * 5 4 2 7 7 O 1.21286 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.50690 * 120.00024 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47225 * 180.02562 * 8 6 5 10 10 C 1.34431 * 126.82252 * 124.71121 * 9 8 6 11 11 N 1.30841 * 108.07470 * 179.89352 * 10 9 8 12 12 C 1.33238 * 109.82734 * 0.38242 * 11 10 9 13 13 N 1.30715 * 108.95198 * 359.75935 * 12 11 10 14 14 C 1.48415 * 104.33809 * 320.38760 * 5 4 2 15 15 C 1.54281 * 110.34627 * 122.23200 * 2 1 3 16 16 H 1.09002 * 110.34289 * 359.97438 * 15 2 1 17 17 N 1.46501 * 110.34308 * 237.84910 * 15 2 1 18 18 C 1.36932 * 120.00202 * 156.47696 * 17 15 2 19 19 H 1.08004 * 120.00142 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00464 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99375 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00370 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46847 * 59.99943 * 22 20 18 24 24 H 1.48498 * 109.47015 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47218 * 299.99931 * 22 20 18 26 26 H 1.08998 * 109.46945 * 297.76612 * 1 2 3 27 27 H 1.09000 * 109.47393 * 57.77036 * 1 2 3 28 28 H 1.08997 * 109.46826 * 177.76947 * 1 2 3 29 29 H 1.09001 * 109.47416 * 182.23800 * 3 2 1 30 30 H 1.09004 * 109.47417 * 302.23193 * 3 2 1 31 31 H 1.08998 * 109.47229 * 62.23076 * 3 2 1 32 32 H 1.08999 * 110.40947 * 23.77844 * 4 2 1 33 33 H 1.09001 * 110.40962 * 146.09243 * 4 2 1 34 34 H 1.09002 * 109.47556 * 300.00158 * 8 6 5 35 35 H 1.09003 * 109.47144 * 60.00161 * 8 6 5 36 36 H 1.07994 * 125.96462 * 0.03784 * 10 9 8 37 37 H 1.08002 * 125.52306 * 179.73074 * 12 11 10 38 38 H 1.08997 * 110.44874 * 280.87091 * 14 5 4 39 39 H 1.09004 * 110.48780 * 158.35620 * 14 5 4 40 40 H 0.97004 * 119.99809 * 336.46810 * 17 15 2 41 41 H 0.96999 * 119.99854 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3140 -2.1438 -0.7227 6 6 2.0770 -3.3105 -1.3544 7 8 1.6053 -3.3102 -2.4718 8 6 2.3991 -4.6153 -0.6729 9 7 2.0531 -5.7283 -1.5605 10 6 2.8675 -6.7173 -1.9677 11 7 2.1817 -7.5125 -2.7482 12 6 0.9339 -7.0613 -2.8691 13 7 0.8063 -5.9706 -2.1600 14 6 2.8820 -1.9421 0.6336 15 6 2.0664 -0.7715 1.2236 16 1 1.2399 -1.1501 1.8250 17 7 2.9289 0.0931 2.0328 18 6 3.1221 -0.1819 3.3603 19 1 2.6384 -1.0359 3.8109 20 6 3.9389 0.6377 4.1272 21 7 4.5280 1.6788 3.5782 22 14 4.2019 0.2630 5.9382 23 1 4.8095 -1.0845 6.0816 24 1 5.1095 1.2800 6.5273 25 1 2.8963 0.2951 6.6450 26 1 -0.3633 0.4787 0.9093 27 1 -0.3634 0.5481 -0.8693 28 1 -0.3633 -1.0269 -0.0400 29 1 3.1521 1.4171 -0.0401 30 1 1.6758 1.9657 -0.8693 31 1 1.7408 1.9416 0.9093 32 1 1.3223 -0.7869 -2.0207 33 1 2.9938 -0.3228 -1.5807 34 1 3.4639 -4.6520 -0.4429 35 1 1.8250 -4.6944 0.2503 36 1 3.9060 -6.8361 -1.6960 37 1 0.1544 -7.5218 -3.4579 38 1 3.9369 -1.6759 0.5689 39 1 2.7518 -2.8392 1.2389 40 1 3.3632 0.8604 1.6282 41 1 5.0990 2.2513 4.1140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996583067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:34 Heat of formation + Delta-G solvation = 67.546567 kcal Electronic energy + Delta-G solvation = -23829.176286 eV Core-core repulsion = 20360.390294 eV Total energy + Delta-G solvation = -3468.785993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.00468 -41.27572 -39.38879 -35.84073 -35.08845 -34.51794 -32.62842 -32.16330 -29.77229 -29.09414 -28.25111 -26.82471 -25.68036 -23.48673 -22.93018 -22.89269 -20.52133 -19.90277 -19.16774 -18.47150 -17.96109 -17.17841 -16.73397 -16.52843 -16.15918 -15.70411 -15.49682 -15.45373 -15.21635 -14.87451 -14.75818 -14.19688 -13.95469 -13.74653 -13.30333 -13.19102 -13.00609 -12.81194 -12.76516 -12.69684 -12.50740 -12.08987 -12.06057 -11.91745 -11.46129 -11.39275 -11.29710 -11.01778 -10.90647 -10.77176 -10.54683 -9.80744 -8.96073 -7.89149 -5.17105 0.67360 1.25235 1.44780 1.53957 1.55102 1.60620 1.91729 2.04953 2.61085 3.20566 3.43599 3.53291 3.59495 3.73779 3.76894 3.89958 4.04758 4.08721 4.12676 4.36031 4.38416 4.41519 4.57900 4.61571 4.75254 4.85014 4.87502 4.94650 5.01703 5.09153 5.15637 5.23490 5.31897 5.43829 5.48940 5.52097 5.62126 5.85931 6.32593 6.47530 6.98780 7.12598 7.41490 8.15135 8.38900 9.33625 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003840 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.588424 B = 7290.532728 C = 8302.698532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 C -0.123 4.123 4 C 0.121 3.879 5 N -0.612 5.612 6 C 0.518 3.482 7 O -0.570 6.570 8 C 0.116 3.884 9 N -0.377 5.377 10 C 0.264 3.736 11 N -0.574 5.574 12 C 0.186 3.814 13 N -0.338 5.338 14 C 0.085 3.915 15 C 0.168 3.832 16 H 0.059 0.941 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.068 4.068 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.275 1.275 24 H -0.303 1.303 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.136 0.864 36 H 0.266 0.734 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.383 0.617 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 -11.674 -8.147 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.083 4.083 3 C -0.180 4.180 4 C -0.001 4.001 5 N -0.346 5.346 6 C 0.306 3.694 7 O -0.449 6.449 8 C -0.009 4.009 9 N -0.168 5.168 10 C -0.032 4.032 11 N -0.302 5.302 12 C -0.117 4.117 13 N -0.165 5.165 14 C -0.040 4.040 15 C 0.057 3.943 16 H 0.077 0.923 17 N -0.368 5.368 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.230 1.230 25 H -0.209 1.209 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.192 0.808 35 H 0.154 0.846 36 H 0.281 0.719 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.220 0.780 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.006 -11.658 -8.652 15.060 hybrid contribution 0.590 0.668 1.021 1.356 sum -3.416 -10.989 -7.631 13.808 Atomic orbital electron populations 1.21732 0.93016 1.01382 1.02101 1.21686 0.96559 0.95745 0.94305 1.21575 1.00306 0.94518 1.01637 1.22390 1.00719 0.80784 0.96254 1.49019 1.62004 1.05105 1.18426 1.20581 0.78099 0.85018 0.85699 1.90760 1.46063 1.87134 1.20917 1.21839 1.06881 0.80307 0.91849 1.50121 1.08080 1.21326 1.37226 1.27021 1.00139 0.84260 0.91778 1.70547 1.05448 1.31835 1.22361 1.26531 0.95551 0.91285 0.98336 1.78120 1.03203 1.19306 1.15829 1.23529 0.98525 1.01154 0.80824 1.21289 0.92164 0.90064 0.90764 0.92267 1.42850 1.55523 1.31587 1.06827 1.19599 1.22086 1.08370 0.86983 0.90216 1.25418 1.00993 0.98013 1.01661 1.69785 1.36612 1.18662 1.36618 0.85352 0.77156 0.76959 0.81089 1.20146 1.22995 1.20947 0.92695 0.91525 0.93190 0.93261 0.91233 0.93291 0.90776 0.90788 0.80826 0.84608 0.71880 0.74632 0.90838 0.88478 0.78047 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 8.24 71.98 0.59 -2.68 16 2 C -0.08 -2.33 1.03 -51.27 -0.05 -2.38 16 3 C -0.12 -3.71 7.11 71.98 0.51 -3.20 16 4 C 0.12 3.31 6.14 86.53 0.53 3.84 16 5 N -0.61 -15.95 3.32 -807.25 -2.68 -18.63 16 6 C 0.52 13.90 7.95 87.65 0.70 14.60 16 7 O -0.57 -20.52 16.01 -3.05 -0.05 -20.57 16 8 C 0.12 2.05 6.02 85.63 0.52 2.57 16 9 N -0.38 -8.41 3.41 -355.81 -1.21 -9.63 16 10 C 0.26 4.75 12.63 180.36 2.28 7.03 16 11 N -0.57 -13.43 11.19 -204.00 -2.28 -15.71 16 12 C 0.19 4.48 13.03 180.77 2.36 6.84 16 13 N -0.34 -9.62 11.82 -61.24 -0.72 -10.34 16 14 C 0.08 2.24 6.65 86.48 0.57 2.82 16 15 C 0.17 5.48 3.33 45.90 0.15 5.64 16 16 H 0.06 2.00 7.67 -2.39 -0.02 1.98 16 17 N -0.73 -31.04 4.61 -318.66 -1.47 -32.51 16 18 C -0.24 -11.57 9.96 84.03 0.84 -10.73 16 19 H 0.08 3.65 7.83 -2.91 -0.02 3.62 16 20 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 21 N -0.97 -54.46 13.06 21.65 0.28 -54.18 16 22 Si 0.96 42.43 29.55 68.60 2.03 44.46 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.61 6.95 -2.39 -0.02 1.60 16 30 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.05 1.72 7.74 -2.39 -0.02 1.71 16 32 H 0.07 2.10 7.60 -2.39 -0.02 2.08 16 33 H 0.07 1.98 7.83 -2.39 -0.02 1.96 16 34 H 0.17 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.14 1.99 7.96 -2.39 -0.02 1.97 16 36 H 0.27 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.24 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 39 H 0.10 2.06 7.32 -2.39 -0.02 2.05 16 40 H 0.38 17.74 5.05 -92.71 -0.47 17.27 16 41 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -72.58 340.94 3.92 -68.66 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.57 Total: 27.18 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 9.46 Total: 21.27 kcal Atomic # 7 Polarization: -132.91 SS G_CDS: -8.08 Total: -141.00 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -72.58 3.92 -68.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.202 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds