Wall clock time and date at job start Tue Mar 31 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00174 * 2 1 4 4 H 1.48507 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47361 * 299.99767 * 3 2 1 6 6 H 1.48498 * 109.47212 * 60.00418 * 3 2 1 7 7 C 1.38814 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00305 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00004 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.52417 * 324.92232 * 10 9 7 12 12 C 1.53039 * 109.49890 * 204.84088 * 10 9 7 13 13 C 1.53070 * 109.65812 * 178.74934 * 12 10 9 14 14 C 1.53195 * 109.29524 * 61.15209 * 13 12 10 15 15 N 1.46919 * 108.89273 * 305.57804 * 14 13 12 16 16 C 1.34784 * 120.63188 * 233.51696 * 15 14 13 17 17 O 1.21280 * 119.99866 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99526 * 359.97438 * 16 15 14 19 19 C 1.53006 * 109.46708 * 180.02562 * 18 16 15 20 20 N 1.46498 * 109.47029 * 179.97438 * 19 18 16 21 21 C 1.34431 * 126.82262 * 124.70520 * 20 19 18 22 22 N 1.30832 * 108.07508 * 179.89444 * 21 20 19 23 23 C 1.33238 * 109.82887 * 0.38403 * 22 21 20 24 24 N 1.30713 * 108.95066 * 359.76530 * 23 22 21 25 25 C 1.46928 * 118.73982 * 53.53793 * 15 14 13 26 26 H 0.97004 * 119.99849 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00008 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.45640 * 298.70748 * 12 10 9 29 29 H 1.09000 * 109.45893 * 58.67539 * 12 10 9 30 30 H 1.08997 * 109.38860 * 301.27396 * 13 12 10 31 31 H 1.09003 * 109.62046 * 181.16739 * 13 12 10 32 32 H 1.09002 * 109.58720 * 185.71834 * 14 13 12 33 33 H 1.08996 * 109.58651 * 65.43731 * 14 13 12 34 34 H 1.08996 * 109.47104 * 299.99859 * 18 16 15 35 35 H 1.08994 * 109.47167 * 60.00297 * 18 16 15 36 36 H 1.08997 * 109.46808 * 300.00166 * 19 18 16 37 37 H 1.08997 * 109.46847 * 59.99778 * 19 18 16 38 38 H 1.08001 * 125.95856 * 0.04461 * 21 20 19 39 39 H 1.08002 * 125.52425 * 179.72096 * 23 22 21 40 40 H 1.08998 * 109.58787 * 66.18123 * 25 15 14 41 41 H 1.09007 * 109.58600 * 186.46436 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9677 -3.5518 -0.5927 12 6 1.1790 -4.7535 -0.6075 13 6 1.9521 -6.0743 -0.6391 14 6 2.3196 -6.4801 0.7917 15 7 3.0407 -5.3708 1.4305 16 6 4.2453 -5.5725 2.0005 17 8 4.8303 -4.6486 2.5251 18 6 4.8646 -6.9463 1.9871 19 6 6.2203 -6.9015 2.6950 20 7 6.8221 -8.2371 2.6825 21 6 8.0355 -8.5696 2.2089 22 7 8.2005 -9.8558 2.3828 23 6 7.1158 -10.3775 2.9541 24 7 6.2435 -9.4255 3.1572 25 6 2.4236 -4.0374 1.4365 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 0.2809 -4.8751 -0.0018 29 1 0.8973 -4.4737 -1.6226 30 1 2.8616 -5.9472 -1.2262 31 1 1.3331 -6.8501 -1.0897 32 1 2.9562 -7.3646 0.7686 33 1 1.4118 -6.6979 1.3543 34 1 4.2080 -7.6459 2.5043 35 1 5.0032 -7.2723 0.9563 36 1 6.8770 -6.2017 2.1782 37 1 6.0812 -6.5756 3.7258 38 1 8.7503 -7.8927 1.7648 39 1 6.9792 -11.4184 3.2076 40 1 1.5230 -4.0543 2.0503 41 1 3.1280 -3.3105 1.8411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998567391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:20 Heat of formation + Delta-G solvation = 66.678332 kcal Electronic energy + Delta-G solvation = -23185.092138 eV Core-core repulsion = 19716.268496 eV Total energy + Delta-G solvation = -3468.823642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31490 -40.12304 -37.54617 -35.08588 -34.55449 -32.42177 -31.49368 -31.35117 -30.73090 -28.31809 -25.97852 -24.41700 -23.87284 -22.25991 -21.97070 -21.78066 -20.19961 -18.83566 -17.93004 -17.14155 -16.65334 -16.35323 -15.78930 -15.43151 -15.03712 -14.78768 -14.43657 -14.30365 -14.12130 -13.71867 -13.51578 -13.37320 -12.88678 -12.71814 -12.49783 -12.44613 -12.16347 -11.58030 -11.40737 -11.10355 -10.90039 -10.72799 -10.65474 -10.32956 -10.22361 -10.10397 -10.02537 -9.88280 -9.83624 -9.63920 -9.13560 -8.44981 -7.05333 -5.83391 -3.13536 1.34868 1.97546 2.62630 2.69541 3.09636 3.41080 3.47585 3.49513 4.05132 4.12551 4.36531 4.49091 4.53817 4.68439 4.79629 4.88004 4.99973 5.02776 5.17598 5.35421 5.42662 5.44427 5.48414 5.55881 5.72904 5.84040 5.94157 5.95930 6.09293 6.14287 6.14478 6.27397 6.41335 6.48809 6.62618 6.75413 6.92655 7.52069 7.67255 7.79446 8.19953 8.34729 9.46582 10.00137 10.35224 11.38855 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.003061 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.217721 B = 9146.612611 C = 9915.327368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.105 3.895 15 N -0.602 5.602 16 C 0.515 3.485 17 O -0.544 6.544 18 C -0.151 4.151 19 C 0.144 3.856 20 N -0.377 5.377 21 C 0.256 3.744 22 N -0.551 5.551 23 C 0.195 3.805 24 N -0.320 5.320 25 C 0.091 3.909 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.062 0.938 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -19.985 2.171 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.335 5.335 16 C 0.301 3.699 17 O -0.422 6.422 18 C -0.192 4.192 19 C 0.022 3.978 20 N -0.168 5.168 21 C -0.041 4.041 22 N -0.278 5.278 23 C -0.108 4.108 24 N -0.148 5.148 25 C -0.033 4.033 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.236 0.764 39 H 0.232 0.768 40 H 0.080 0.920 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.701 -19.521 2.679 21.963 hybrid contribution 0.051 1.098 -0.077 1.102 sum 9.752 -18.424 2.602 21.007 Atomic orbital electron populations 1.69671 1.05141 1.25718 1.57409 1.24758 0.95528 0.97805 1.02591 0.86116 0.78942 0.83947 0.77204 1.20416 1.21815 1.21757 1.19305 0.91107 0.83938 1.43070 0.90992 1.42388 1.05827 0.99580 1.88089 1.20473 0.94886 0.86482 0.92360 0.93172 1.21836 0.98744 0.94022 1.01919 1.21886 1.00968 0.98308 0.95703 1.21767 0.97081 0.88857 0.94070 1.48277 1.18509 1.11317 1.55446 1.20210 0.81349 0.89712 0.78596 1.90733 1.61689 1.44347 1.45462 1.21892 0.96991 0.96968 1.03312 1.21609 0.94770 0.77365 1.04023 1.50659 1.13362 1.08382 1.44381 1.26133 0.88270 0.93593 0.96076 1.70555 1.27571 1.06975 1.22725 1.26016 0.87374 1.00388 0.96980 1.78035 1.22705 0.91146 1.22885 1.22837 0.97885 0.81393 1.01179 0.93466 0.78044 0.91996 0.91333 0.91628 0.90880 0.90349 0.91203 0.87602 0.88429 0.86952 0.88192 0.76430 0.76768 0.91975 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -17.42 5.13 -53.31 -0.27 -17.69 16 10 C 0.17 3.22 2.92 -67.81 -0.20 3.02 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.13 -1.89 5.35 -26.67 -0.14 -2.03 16 13 C -0.13 -1.43 6.09 -26.59 -0.16 -1.59 16 14 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 15 N -0.60 -8.44 2.97 -172.77 -0.51 -8.95 16 16 C 0.51 7.08 7.70 -10.98 -0.08 6.99 16 17 O -0.54 -9.54 15.39 5.56 0.09 -9.45 16 18 C -0.15 -1.42 4.26 -27.88 -0.12 -1.54 16 19 C 0.14 1.28 5.84 -4.04 -0.02 1.25 16 20 N -0.38 -3.53 3.69 -62.63 -0.23 -3.76 16 21 C 0.26 2.12 12.63 -90.65 -1.14 0.98 16 22 N -0.55 -5.63 11.19 -15.83 -0.18 -5.80 16 23 C 0.20 1.84 13.03 -91.82 -1.20 0.65 16 24 N -0.32 -3.43 12.57 29.29 0.37 -3.06 16 25 C 0.09 1.64 6.02 -3.71 -0.02 1.62 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.39 9.87 7.80 -40.82 -0.32 9.55 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.97 7.94 -51.93 -0.41 0.56 16 35 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.11 0.84 8.04 -51.93 -0.42 0.42 16 37 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.94 7.00 -51.92 -0.36 1.58 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -34.15 342.18 -9.23 -43.38 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.99 Total: 6.60 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -3.36 Total: 3.21 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.10 Total: -66.22 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.15 -9.23 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998567391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.061 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds