Wall clock time and date at job start Tue Mar 31 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36593 * 126.58183 * 2 1 4 4 C 1.47528 * 125.76917 * 0.03257 * 3 2 1 5 5 O 1.21590 * 120.00272 * 354.22195 * 4 3 2 6 6 N 1.34775 * 119.99743 * 173.94151 * 4 3 2 7 7 C 1.46497 * 120.00097 * 354.73358 * 6 4 3 8 8 C 1.46504 * 119.99838 * 174.72701 * 6 4 3 9 9 C 1.53783 * 113.61490 * 219.14079 * 8 6 4 10 10 C 1.53958 * 87.02008 * 220.05240 * 9 8 6 11 11 N 1.46493 * 113.74766 * 139.94519 * 10 9 8 12 12 C 1.36929 * 120.00182 * 107.39976 * 11 10 9 13 13 H 1.08001 * 120.00168 * 359.97438 * 12 11 10 14 14 C 1.38816 * 120.00280 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00396 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99626 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47401 * 90.00038 * 16 14 12 18 18 H 1.48502 * 109.46889 * 209.99731 * 16 14 12 19 19 H 1.48505 * 109.47269 * 329.99624 * 16 14 12 20 20 C 1.53784 * 87.11265 * 25.36117 * 10 9 8 21 21 N 1.34399 * 108.45848 * 179.77195 * 3 2 1 22 22 N 1.28763 * 109.52435 * 0.22461 * 21 3 2 23 23 N 1.34808 * 126.57830 * 180.15987 * 2 1 3 24 24 C 1.46505 * 126.59586 * 359.95692 * 23 2 1 25 25 H 1.08997 * 109.47473 * 89.99961 * 1 2 3 26 26 H 1.09004 * 109.47219 * 210.00582 * 1 2 3 27 27 H 1.09006 * 109.47362 * 330.00334 * 1 2 3 28 28 H 1.09002 * 109.47578 * 85.13499 * 7 6 4 29 29 H 1.09007 * 109.47141 * 205.13050 * 7 6 4 30 30 H 1.08993 * 109.47643 * 325.13306 * 7 6 4 31 31 H 1.08996 * 112.84868 * 350.33918 * 8 6 4 32 32 H 1.09001 * 113.61135 * 334.56604 * 9 8 6 33 33 H 1.08998 * 113.61454 * 105.47105 * 9 8 6 34 34 H 1.09004 * 113.53163 * 270.81410 * 10 9 8 35 35 H 0.97006 * 119.99558 * 287.40464 * 11 10 9 36 36 H 0.96993 * 120.00388 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61538 * 220.09513 * 20 10 9 38 38 H 1.09001 * 113.61033 * 89.18577 * 20 10 9 39 39 H 1.09000 * 109.46960 * 270.28976 * 24 23 2 40 40 H 1.09001 * 109.47082 * 30.29047 * 24 23 2 41 41 H 1.09006 * 109.46980 * 150.28789 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0007 5 8 0.6911 2.7645 -0.1047 6 7 2.7756 3.4967 0.1238 7 6 4.1844 3.1809 0.3725 8 6 2.3471 4.8929 0.0088 9 6 3.3447 5.7829 -0.7512 10 6 3.0428 6.8740 0.2921 11 7 4.2249 7.6286 0.7155 12 6 4.3972 8.9216 0.2990 13 1 3.6618 9.3850 -0.3420 14 6 5.5176 9.6365 0.6997 15 7 5.6835 10.8791 0.2990 16 14 6.7907 8.8343 1.8066 17 1 7.8218 8.1665 0.9723 18 1 7.4341 9.8709 2.6532 19 1 6.1281 7.8277 2.6745 20 6 2.6597 5.7378 1.2551 21 7 3.5984 0.6788 0.0051 22 7 3.6299 -0.6085 0.0035 23 7 2.3103 -1.0826 -0.0030 24 6 1.8863 -2.4849 -0.0060 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 4.6862 2.9871 -0.5756 29 1 4.6631 4.0237 0.8712 30 1 4.2522 2.2971 1.0067 31 1 1.3192 4.9928 -0.3398 32 1 4.3709 5.4171 -0.7160 33 1 3.0202 6.0399 -1.7596 34 1 2.2055 7.5166 0.0200 35 1 4.8857 7.2122 1.2909 36 1 6.4662 11.3788 0.5793 37 1 1.7831 5.9586 1.8641 38 1 3.4984 5.3597 1.8398 39 1 1.7767 -2.8335 1.0209 40 1 0.9314 -2.5746 -0.5240 41 1 2.6352 -3.0898 -0.5173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998572001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:53 Heat of formation + Delta-G solvation = 87.042271 kcal Electronic energy + Delta-G solvation = -23423.304902 eV Core-core repulsion = 19955.364307 eV Total energy + Delta-G solvation = -3467.940595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -43.34224 -41.14695 -39.29848 -36.47396 -35.80083 -34.75385 -33.30458 -32.51526 -29.24113 -28.42311 -27.96701 -26.63929 -26.33864 -24.79535 -23.27443 -21.98435 -21.05606 -20.35755 -19.32548 -18.58311 -17.77701 -17.51269 -16.79824 -16.51787 -16.26238 -15.93297 -15.65587 -15.17614 -14.71559 -14.67597 -14.33271 -14.21346 -14.06549 -13.89887 -13.61297 -13.57259 -13.50022 -13.24950 -13.21682 -12.83624 -12.69445 -12.28594 -12.06915 -12.00879 -11.80851 -11.71810 -11.53138 -11.11535 -11.01519 -10.90031 -10.24796 -9.59542 -9.27184 -8.00880 -5.34312 0.09866 0.57893 1.13645 1.39517 1.42906 1.49878 1.93744 2.14603 2.50005 3.13233 3.28927 3.36842 3.60952 3.63290 3.69180 3.78805 3.82390 4.08716 4.23812 4.30453 4.33484 4.34912 4.57217 4.63687 4.65796 4.71455 4.75022 4.81505 4.85332 4.87712 4.97401 5.06927 5.13783 5.15667 5.39956 5.51196 5.61967 5.79281 6.23681 6.33135 6.82071 7.07401 7.09062 7.85012 8.04587 9.20596 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033187 B = 0.003178 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.499425 B = 8807.844585 C = 9404.984506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.133 4.133 4 C 0.599 3.401 5 O -0.560 6.560 6 N -0.587 5.587 7 C 0.086 3.914 8 C 0.133 3.867 9 C -0.165 4.165 10 C 0.158 3.842 11 N -0.738 5.738 12 C -0.232 4.232 13 H 0.059 0.941 14 C -0.066 4.066 15 N -0.985 5.985 16 Si 0.954 3.046 17 H -0.278 1.278 18 H -0.297 1.297 19 H -0.250 1.250 20 C -0.150 4.150 21 N -0.218 5.218 22 N -0.098 5.098 23 N -0.353 5.353 24 C 0.072 3.928 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.367 0.633 36 H 0.257 0.743 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 -32.442 0.944 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.007 4.007 3 C -0.273 4.273 4 C 0.386 3.614 5 O -0.439 6.439 6 N -0.317 5.317 7 C -0.056 4.056 8 C 0.029 3.971 9 C -0.207 4.207 10 C 0.048 3.952 11 N -0.379 5.379 12 C -0.363 4.363 13 H 0.077 0.923 14 C -0.257 4.257 15 N -0.635 5.635 16 Si 0.781 3.219 17 H -0.204 1.204 18 H -0.224 1.224 19 H -0.174 1.174 20 C -0.190 4.190 21 N -0.091 5.091 22 N -0.077 5.077 23 N -0.139 5.139 24 C -0.066 4.066 25 H 0.123 0.877 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.387 -32.562 0.797 34.188 hybrid contribution 0.350 0.440 0.403 0.691 sum -10.038 -32.123 1.200 33.676 Atomic orbital electron populations 1.20802 0.82225 1.06193 1.05680 1.22337 0.97449 0.85736 0.95184 1.21228 0.89704 0.95441 1.20883 1.17033 0.85068 0.83182 0.76089 1.90721 1.16548 1.83883 1.52771 1.47664 1.09282 1.05554 1.69193 1.21957 0.79846 1.01823 1.02023 1.22379 0.99557 0.77767 0.97376 1.24159 0.99537 0.97210 0.99753 1.21623 0.89334 0.90057 0.94167 1.42667 1.24402 1.11558 1.59243 1.19109 1.04815 0.88858 1.23538 0.92300 1.25519 1.00934 0.96524 1.02700 1.69883 1.30829 1.11229 1.51556 0.85420 0.79416 0.77879 0.79146 1.20433 1.22435 1.17449 1.23806 1.02100 0.95869 0.97237 1.74750 1.19500 1.04386 1.10454 1.81909 0.98003 1.03486 1.24319 1.50611 1.05248 1.09349 1.48709 1.22715 1.04141 0.73177 1.06616 0.87712 0.86908 0.88960 0.92246 0.90729 0.89697 0.86386 0.89891 0.91575 0.90093 0.79953 0.93386 0.90256 0.89661 0.87298 0.85465 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.32 71.24 0.66 -0.28 16 2 C 0.13 2.34 7.02 41.72 0.29 2.64 16 3 C -0.13 -3.33 6.63 40.82 0.27 -3.06 16 4 C 0.60 17.13 7.66 86.69 0.66 17.80 16 5 O -0.56 -17.37 14.29 -4.00 -0.06 -17.43 16 6 N -0.59 -16.58 3.08 -823.40 -2.54 -19.12 16 7 C 0.09 2.22 7.98 127.77 1.02 3.24 16 8 C 0.13 3.91 4.19 45.52 0.19 4.10 16 9 C -0.17 -5.41 7.32 31.18 0.23 -5.19 16 10 C 0.16 5.91 4.48 45.58 0.20 6.11 16 11 N -0.74 -34.13 5.21 -320.17 -1.67 -35.80 16 12 C -0.23 -13.23 10.45 84.04 0.88 -12.36 16 13 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 14 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 15 N -0.98 -63.62 13.97 21.65 0.30 -63.32 16 16 Si 0.95 45.61 27.74 68.60 1.90 47.52 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 20 C -0.15 -4.59 7.35 31.12 0.23 -4.37 16 21 N -0.22 -5.72 9.03 -49.99 -0.45 -6.17 16 22 N -0.10 -2.25 13.78 37.02 0.51 -1.74 16 23 N -0.35 -5.32 4.03 -355.09 -1.43 -6.75 16 24 C 0.07 0.20 11.17 127.77 1.43 1.62 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.11 0.29 7.84 -2.39 -0.02 0.28 16 27 H 0.09 1.42 6.56 -2.38 -0.02 1.41 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.88 6.15 -2.38 -0.01 1.87 16 30 H 0.08 2.16 5.85 -2.39 -0.01 2.15 16 31 H 0.12 3.51 7.25 -2.39 -0.02 3.49 16 32 H 0.08 2.75 6.70 -2.39 -0.02 2.74 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 3.12 8.10 -2.38 -0.02 3.10 16 35 H 0.37 16.21 5.79 -92.70 -0.54 15.67 16 36 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 2.55 6.86 -2.39 -0.02 2.54 16 39 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.13 -0.39 7.78 -2.39 -0.02 -0.41 16 41 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 Total: -1.00 -77.24 335.04 3.57 -73.67 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.46 Total: 22.30 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.54 Total: 6.85 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.28 Total: -132.90 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.06 Total: -17.43 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.52 kcal Total: -77.24 3.57 -73.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998572001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.717 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds