Wall clock time and date at job start Tue Mar 31 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.95963 * 2 1 4 4 C 1.33236 * 109.82564 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52469 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46755 * 90.00343 * 5 4 3 7 7 O 1.21281 * 120.00187 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00022 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99790 * 359.97438 * 8 6 5 10 10 C 1.46499 * 120.00228 * 179.97438 * 8 6 5 11 11 C 1.53782 * 113.61652 * 239.99883 * 10 8 6 12 12 C 1.53781 * 87.08260 * 220.01840 * 11 10 8 13 13 N 1.46497 * 113.61305 * 270.79919 * 12 11 10 14 14 C 1.36944 * 119.99791 * 203.46713 * 13 12 11 15 15 H 1.07993 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31615 * 119.99762 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47113 * 89.99658 * 18 16 14 20 20 H 1.48503 * 109.46988 * 209.99850 * 18 16 14 21 21 H 1.48501 * 109.46739 * 329.99844 * 18 16 14 22 22 C 1.53786 * 87.17350 * 25.39213 * 12 11 10 23 23 N 1.30715 * 108.94816 * 0.26410 * 4 3 2 24 24 N 1.34426 * 125.96313 * 180.02562 * 2 1 3 25 25 H 0.97000 * 126.82081 * 359.96925 * 24 2 1 26 26 H 1.09003 * 109.46951 * 89.97130 * 1 2 3 27 27 H 1.08995 * 109.47298 * 209.97853 * 1 2 3 28 28 H 1.09008 * 109.47157 * 329.97672 * 1 2 3 29 29 H 1.08996 * 109.47022 * 330.00486 * 5 4 3 30 30 H 1.09004 * 109.47138 * 209.99941 * 5 4 3 31 31 H 1.08997 * 109.47336 * 269.99759 * 9 8 6 32 32 H 1.09000 * 109.47075 * 30.00567 * 9 8 6 33 33 H 1.09009 * 109.46825 * 149.99777 * 9 8 6 34 34 H 1.08997 * 112.90648 * 11.25445 * 10 8 6 35 35 H 1.09001 * 113.61250 * 105.46657 * 11 10 8 36 36 H 1.08997 * 113.61225 * 334.56498 * 11 10 8 37 37 H 1.09002 * 113.61445 * 139.98212 * 12 11 10 38 38 H 0.96995 * 120.00146 * 23.47603 * 13 12 11 39 39 H 0.97005 * 119.99972 * 180.02562 * 17 16 14 40 40 H 1.08993 * 113.61491 * 89.15923 * 22 12 11 41 41 H 1.09000 * 113.61138 * 220.06261 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0013 6 6 5.1319 1.9354 1.4193 7 8 4.5145 1.4462 2.3415 8 7 6.1710 2.7578 1.6650 9 6 6.9171 3.3483 0.5511 10 6 6.5543 3.0614 3.0460 11 6 6.4790 4.5580 3.3915 12 6 7.7826 4.3604 4.1831 13 7 7.5681 3.9771 5.5806 14 6 8.5377 4.2255 6.5152 15 1 9.4602 4.7043 6.2221 16 6 8.3343 3.8627 7.8396 17 7 9.2660 4.1019 8.7379 18 14 6.7382 3.0350 8.3468 19 1 6.8840 1.5623 8.2251 20 1 6.4240 3.3868 9.7549 21 1 5.6381 3.4983 7.4634 22 6 8.0758 3.1693 3.2555 23 7 3.6194 -0.6168 -0.0066 24 7 2.2965 -1.0880 -0.0005 25 1 2.0094 -2.0146 -0.0005 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 4.4698 2.5470 -0.5151 30 1 5.5741 1.1509 -0.5155 31 1 7.7399 2.6890 0.2748 32 1 6.2526 3.4777 -0.3032 33 1 7.3138 4.3177 0.8528 34 1 6.0591 2.4195 3.7746 35 1 5.6245 4.8195 4.0157 36 1 6.5884 5.2118 2.5263 37 1 8.4889 5.1833 4.0735 38 1 6.7394 3.5472 5.8439 39 1 9.1240 3.8481 9.6634 40 1 8.6225 3.4428 2.3532 41 1 8.5085 2.3114 3.7702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998744144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:24 Heat of formation + Delta-G solvation = 92.234526 kcal Electronic energy + Delta-G solvation = -23109.939712 eV Core-core repulsion = 19642.224270 eV Total energy + Delta-G solvation = -3467.715442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.38003 -40.13446 -38.14346 -34.91214 -33.91509 -32.95291 -32.60518 -30.62383 -29.88100 -27.99107 -27.11260 -25.20796 -24.50342 -22.72579 -21.77298 -20.95602 -19.43037 -18.35817 -18.11100 -17.76305 -17.13048 -16.33261 -15.69871 -15.66187 -14.91441 -14.61299 -14.27705 -14.02023 -13.67321 -13.40466 -13.19091 -13.12451 -12.95888 -12.69076 -12.44482 -12.29107 -12.09573 -12.05378 -11.98793 -11.85091 -10.91617 -10.73595 -10.40149 -10.36475 -10.25719 -10.23298 -9.88588 -9.75192 -9.60435 -9.46600 -8.91422 -8.46868 -7.29742 -5.78201 -3.14616 1.34592 2.35771 2.53082 2.65157 3.15294 3.41166 3.45845 3.48791 3.69277 4.25040 4.45406 4.55216 4.59910 4.86517 4.97627 4.99036 5.01287 5.08195 5.10749 5.23505 5.30764 5.38129 5.39941 5.49029 5.59265 5.73303 5.77398 5.99190 6.02749 6.13028 6.15543 6.32265 6.48142 6.60540 6.68971 6.78743 6.91420 7.46154 7.86334 7.98728 8.21820 8.41319 9.18898 9.91630 10.10217 11.39645 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020504 B = 0.003351 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.285091 B = 8354.165009 C = 9281.377713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.531 5.531 4 C 0.252 3.748 5 C -0.048 4.048 6 C 0.519 3.481 7 O -0.531 6.531 8 N -0.602 5.602 9 C 0.073 3.927 10 C 0.123 3.877 11 C -0.168 4.168 12 C 0.177 3.823 13 N -0.731 5.731 14 C -0.248 4.248 15 H 0.093 0.907 16 C 0.008 3.992 17 N -0.931 5.931 18 Si 0.881 3.119 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.179 4.179 23 N -0.304 5.304 24 N -0.482 5.482 25 H 0.439 0.561 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 -6.529 -24.683 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.260 5.260 4 C -0.031 4.031 5 C -0.090 4.090 6 C 0.305 3.695 7 O -0.407 6.407 8 N -0.334 5.334 9 C -0.070 4.070 10 C 0.020 3.980 11 C -0.208 4.208 12 C 0.065 3.935 13 N -0.371 5.371 14 C -0.377 4.377 15 H 0.111 0.889 16 C -0.188 4.188 17 N -0.579 5.579 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.221 4.221 23 N -0.133 5.133 24 N -0.201 5.201 25 H 0.285 0.715 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.923 -6.724 -24.026 28.571 hybrid contribution -1.394 -1.339 0.436 1.981 sum -15.317 -8.063 -23.590 29.259 Atomic orbital electron populations 1.20394 0.83612 1.05186 1.04417 1.24368 0.96616 0.82776 0.95826 1.70294 1.01261 1.29560 1.24881 1.23286 0.92660 0.89743 0.97450 1.19964 0.93638 0.98620 0.96767 1.20168 0.80180 0.78802 0.90373 1.90736 1.52512 1.51336 1.46125 1.47884 1.31175 1.46758 1.07631 1.21816 0.96705 0.99599 0.88867 1.22795 0.96805 0.96796 0.81602 1.23958 1.00755 0.95684 1.00448 1.20857 0.94268 0.94584 0.83801 1.42569 1.19162 1.72128 1.03220 1.19087 0.97088 1.33731 0.87826 0.88938 1.24662 0.97498 1.00861 0.95811 1.69697 1.33519 1.52556 1.02092 0.86603 0.84527 0.79936 0.77865 1.20934 1.21580 1.20169 1.24295 0.94014 1.02987 1.00817 1.77976 0.96708 1.12223 1.26422 1.47919 1.04256 1.10003 1.57885 0.71523 0.89007 0.89855 0.88254 0.86087 0.86555 0.92286 0.91176 0.90244 0.86889 0.91208 0.89899 0.90597 0.80339 0.92976 0.90462 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.28 2.87 8.24 -155.69 -1.28 1.59 16 3 N -0.53 -7.19 11.19 -8.16 -0.09 -7.28 16 4 C 0.25 3.48 6.63 -156.85 -1.04 2.44 16 5 C -0.05 -0.53 4.88 -29.03 -0.14 -0.67 16 6 C 0.52 7.84 7.67 -10.99 -0.08 7.75 16 7 O -0.53 -10.65 15.52 5.56 0.09 -10.56 16 8 N -0.60 -8.09 3.08 -172.89 -0.53 -8.62 16 9 C 0.07 0.63 8.85 59.85 0.53 1.16 16 10 C 0.12 2.01 4.09 -67.02 -0.27 1.74 16 11 C -0.17 -2.68 7.36 -25.92 -0.19 -2.87 16 12 C 0.18 3.35 4.55 -67.12 -0.31 3.05 16 13 N -0.73 -17.55 5.12 -52.64 -0.27 -17.82 16 14 C -0.25 -7.02 10.45 -15.06 -0.16 -7.18 16 15 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 16 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 17 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 18 Si 0.88 22.82 27.74 -169.99 -4.71 18.11 16 19 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 22 C -0.18 -2.94 7.32 -25.82 -0.19 -3.13 16 23 N -0.30 -4.19 12.80 32.42 0.41 -3.78 16 24 N -0.48 -4.84 7.45 32.62 0.24 -4.60 16 25 H 0.44 2.63 8.96 -182.34 -1.63 1.00 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.12 1.03 7.40 -51.93 -0.38 0.64 16 30 H 0.12 1.00 8.11 -51.93 -0.42 0.57 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 6.44 -51.93 -0.33 0.08 16 33 H 0.08 0.64 6.34 -51.92 -0.33 0.32 16 34 H 0.11 2.24 7.24 -51.93 -0.38 1.86 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.08 6.92 -51.93 -0.36 0.72 16 37 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 38 H 0.36 8.83 5.76 -40.82 -0.24 8.59 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.08 1.03 6.74 -51.93 -0.35 0.68 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -39.01 340.88 -8.78 -47.79 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.97 Total: 6.30 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.85 Total: 4.01 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: 0.54 Total: -70.79 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -39.01 -8.78 -47.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998744144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.025 kcal (2) G-P(sol) polarization free energy of solvation -39.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds