Wall clock time and date at job start Tue Mar 31 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36601 * 126.57745 * 2 1 4 4 C 1.47526 * 125.77139 * 0.03807 * 3 2 1 5 5 O 1.21588 * 119.99762 * 353.96121 * 4 3 2 6 6 N 1.34770 * 119.99946 * 173.95794 * 4 3 2 7 7 C 1.46928 * 120.63475 * 353.60034 * 6 4 3 8 8 C 1.53189 * 108.77737 * 126.41072 * 7 6 4 9 9 C 1.53033 * 109.31453 * 54.63765 * 8 7 6 10 10 C 1.53044 * 109.53731 * 298.63718 * 9 8 7 11 11 H 1.09001 * 109.49544 * 301.37362 * 10 9 8 12 12 N 1.46505 * 109.49479 * 181.31635 * 10 9 8 13 13 C 1.36935 * 119.99784 * 154.99902 * 12 10 9 14 14 H 1.08008 * 120.00017 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00171 * 179.97438 * 13 12 10 16 16 N 1.31611 * 119.99918 * 179.72415 * 15 13 12 17 17 Si 1.86801 * 119.99698 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47074 * 90.00136 * 17 15 13 19 19 H 1.48495 * 109.46725 * 209.99889 * 17 15 13 20 20 H 1.48494 * 109.47158 * 329.99871 * 17 15 13 21 21 C 1.46926 * 120.63014 * 173.61946 * 6 4 3 22 22 N 1.34408 * 108.45768 * 179.77300 * 3 2 1 23 23 N 1.28757 * 109.52145 * 0.22655 * 22 3 2 24 24 N 1.34816 * 126.58500 * 180.16566 * 2 1 3 25 25 C 1.46497 * 126.59116 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.46874 * 90.00113 * 1 2 3 27 27 H 1.08991 * 109.46709 * 209.99951 * 1 2 3 28 28 H 1.08994 * 109.46819 * 330.00206 * 1 2 3 29 29 H 1.09000 * 109.58125 * 6.62238 * 7 6 4 30 30 H 1.09000 * 109.58879 * 246.20390 * 7 6 4 31 31 H 1.08996 * 109.49650 * 294.68066 * 8 7 6 32 32 H 1.09011 * 109.49488 * 174.58985 * 8 7 6 33 33 H 1.08998 * 109.46575 * 178.61310 * 9 8 7 34 34 H 1.09003 * 109.45158 * 58.64575 * 9 8 7 35 35 H 0.96996 * 120.00285 * 334.99338 * 12 10 9 36 36 H 0.97003 * 119.99996 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.58618 * 113.79988 * 21 6 4 38 38 H 1.08997 * 109.59046 * 353.37416 * 21 6 4 39 39 H 1.08999 * 109.47216 * 270.24903 * 25 24 2 40 40 H 1.09003 * 109.46992 * 30.24964 * 25 24 2 41 41 H 1.09002 * 109.47089 * 150.24682 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5028 0.0008 5 8 0.6915 2.7646 -0.1092 6 7 2.7755 3.4968 0.1236 7 6 4.1876 3.1970 0.3972 8 6 5.0525 3.8881 -0.6616 9 6 4.7212 5.3819 -0.6896 10 6 3.2505 5.5729 -1.0674 11 1 3.0636 5.1213 -2.0417 12 7 2.9423 7.0040 -1.1246 13 6 1.9083 7.4511 -1.9031 14 1 1.3202 6.7487 -2.4753 15 6 1.6159 8.8070 -1.9570 16 7 0.6256 9.2373 -2.7095 17 14 2.6335 10.0219 -0.9680 18 1 3.7800 10.4899 -1.7875 19 1 1.7885 11.1830 -0.5900 20 1 3.1409 9.3584 0.2598 21 6 2.3651 4.9009 -0.0133 22 7 3.5985 0.6790 0.0051 23 7 3.6300 -0.6082 0.0034 24 7 2.3106 -1.0825 -0.0031 25 6 1.8866 -2.4848 -0.0067 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 4.3475 2.1197 0.3534 30 1 4.4549 3.5682 1.3866 31 1 4.8486 3.4518 -1.6393 32 1 6.1059 3.7536 -0.4152 33 1 5.3528 5.8803 -1.4250 34 1 4.9019 5.8123 0.2955 35 1 3.4706 7.6349 -0.6110 36 1 0.4210 10.1847 -2.7468 37 1 2.4838 5.4111 0.9426 38 1 1.3226 4.9480 -0.3279 39 1 1.7775 -2.8340 1.0201 40 1 0.9314 -2.5743 -0.5243 41 1 2.6352 -3.0895 -0.5185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998802630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:33 Heat of formation + Delta-G solvation = 90.542915 kcal Electronic energy + Delta-G solvation = -23933.827265 eV Core-core repulsion = 20466.038469 eV Total energy + Delta-G solvation = -3467.788796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48149 -39.57995 -37.28022 -35.32983 -34.38145 -32.51654 -32.19979 -31.20870 -29.22244 -27.97405 -27.75325 -25.33567 -23.75660 -22.95346 -21.59066 -21.41574 -20.27370 -19.19712 -17.49274 -17.43207 -16.63830 -16.02319 -15.78353 -15.08678 -14.63299 -14.45128 -14.06314 -14.02482 -13.93186 -13.63722 -13.47408 -13.29648 -13.13471 -12.85642 -12.58941 -12.42107 -12.35307 -12.08582 -11.68696 -11.23370 -10.99909 -10.84309 -10.58883 -10.47207 -10.26832 -10.07700 -9.79976 -9.63506 -9.51399 -9.28283 -9.03430 -8.26777 -7.24070 -5.73293 -3.09947 0.93554 1.61944 1.78773 3.21542 3.39479 3.40765 3.43313 3.48502 4.00575 4.06198 4.38826 4.54430 4.55822 4.62084 4.82789 5.00921 5.07860 5.23081 5.26771 5.33923 5.40075 5.42967 5.51962 5.62163 5.71070 5.82456 5.92323 6.05459 6.13997 6.18149 6.23277 6.34637 6.44725 6.51150 6.80725 6.82149 7.02346 7.64276 7.83876 8.03311 8.38255 8.46074 9.23312 9.95148 10.14376 11.44868 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.003781 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.342319 B = 7403.887237 C = 8126.579418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.121 3.879 3 C -0.093 4.093 4 C 0.597 3.403 5 O -0.537 6.537 6 N -0.589 5.589 7 C 0.069 3.931 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.173 3.827 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.246 4.246 14 H 0.092 0.908 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C 0.094 3.906 22 N -0.202 5.202 23 N -0.074 5.074 24 N -0.365 5.365 25 C 0.088 3.912 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -24.641 7.977 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.016 4.016 3 C -0.233 4.233 4 C 0.382 3.618 5 O -0.414 6.414 6 N -0.321 5.321 7 C -0.054 4.054 8 C -0.162 4.162 9 C -0.169 4.169 10 C 0.063 3.937 11 H 0.078 0.922 12 N -0.385 5.385 13 C -0.375 4.375 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.580 5.580 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.030 4.030 22 N -0.074 5.074 23 N -0.052 5.052 24 N -0.152 5.152 25 C -0.054 4.054 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.314 -24.899 7.739 26.610 hybrid contribution -0.219 1.117 0.708 1.340 sum 5.095 -23.782 8.446 25.746 Atomic orbital electron populations 1.20705 0.84521 1.05240 1.04850 1.21931 0.96305 0.86180 0.97177 1.21363 0.88681 0.95724 1.17484 1.16793 0.85469 0.82305 0.77192 1.90777 1.15961 1.83136 1.51494 1.47999 1.08637 1.06694 1.68722 1.22748 0.79626 1.05281 0.97778 1.21788 0.99100 0.95682 0.99656 1.21892 0.97760 0.95633 1.01630 1.20467 0.91268 0.85414 0.96595 0.92248 1.42746 1.38704 1.01405 1.55611 1.19115 1.06467 0.92623 1.19342 0.89060 1.24674 0.98102 0.96630 0.99567 1.69705 1.31160 1.14277 1.42822 0.86549 0.80019 0.81682 0.80289 1.21092 1.21765 1.20273 1.22733 1.02350 0.77623 1.00337 1.74102 1.18794 1.03439 1.11039 1.81983 0.96211 1.03968 1.23071 1.50217 1.06420 1.07705 1.50814 1.22155 1.02484 0.76115 1.04598 0.88815 0.90795 0.86952 0.84717 0.92274 0.91624 0.91112 0.91507 0.92279 0.80472 0.93057 0.92061 0.88667 0.89355 0.88507 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.32 36.01 0.34 -0.45 16 2 C 0.12 1.35 7.02 -81.87 -0.57 0.78 16 3 C -0.09 -1.34 6.75 -83.54 -0.56 -1.90 16 4 C 0.60 10.21 7.68 -12.48 -0.10 10.11 16 5 O -0.54 -10.34 14.24 5.29 0.08 -10.27 16 6 N -0.59 -9.94 2.97 -174.01 -0.52 -10.46 16 7 C 0.07 0.98 6.32 -3.71 -0.02 0.96 16 8 C -0.12 -1.69 6.08 -26.62 -0.16 -1.86 16 9 C -0.13 -2.11 5.35 -26.69 -0.14 -2.25 16 10 C 0.17 3.48 2.92 -67.81 -0.20 3.28 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 12 N -0.74 -17.84 4.93 -53.30 -0.26 -18.10 16 13 C -0.25 -7.05 10.41 -15.06 -0.16 -7.20 16 14 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 17 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 21 C 0.09 1.82 6.00 -3.71 -0.02 1.79 16 22 N -0.20 -2.83 8.69 32.85 0.29 -2.54 16 23 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 24 N -0.37 -3.47 4.03 -63.59 -0.26 -3.73 16 25 C 0.09 0.34 11.17 59.85 0.67 1.01 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.36 7.84 -51.93 -0.41 -0.05 16 28 H 0.11 1.19 6.57 -51.93 -0.34 0.84 16 29 H 0.14 1.87 3.65 -123.05 -0.45 1.43 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.36 8.47 5.66 -40.82 -0.23 8.24 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 2.12 7.05 -51.93 -0.37 1.76 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 0.16 7.78 -51.93 -0.40 -0.24 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -35.40 331.89 -5.83 -41.23 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.01 Total: 5.92 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.03 Total: 4.35 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.86 Total: -63.83 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.40 -5.83 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998802630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.772 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds