Wall clock time and date at job start Tue Mar 31 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36601 * 126.57745 * 2 1 4 4 C 1.47526 * 125.77139 * 0.03807 * 3 2 1 5 5 O 1.21588 * 119.99762 * 353.96121 * 4 3 2 6 6 N 1.34770 * 119.99946 * 173.95794 * 4 3 2 7 7 C 1.46928 * 120.63475 * 353.60034 * 6 4 3 8 8 C 1.53189 * 108.77737 * 126.41072 * 7 6 4 9 9 C 1.53033 * 109.31453 * 54.63765 * 8 7 6 10 10 C 1.53044 * 109.53731 * 298.63718 * 9 8 7 11 11 H 1.09001 * 109.49544 * 301.37362 * 10 9 8 12 12 N 1.46505 * 109.49479 * 181.31635 * 10 9 8 13 13 C 1.36935 * 119.99784 * 154.99902 * 12 10 9 14 14 H 1.08008 * 120.00017 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00171 * 179.97438 * 13 12 10 16 16 N 1.31611 * 119.99918 * 179.72415 * 15 13 12 17 17 Si 1.86801 * 119.99698 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47074 * 90.00136 * 17 15 13 19 19 H 1.48495 * 109.46725 * 209.99889 * 17 15 13 20 20 H 1.48494 * 109.47158 * 329.99871 * 17 15 13 21 21 C 1.46926 * 120.63014 * 173.61946 * 6 4 3 22 22 N 1.34408 * 108.45768 * 179.77300 * 3 2 1 23 23 N 1.28757 * 109.52145 * 0.22655 * 22 3 2 24 24 N 1.34816 * 126.58500 * 180.16566 * 2 1 3 25 25 C 1.46497 * 126.59116 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.46874 * 90.00113 * 1 2 3 27 27 H 1.08991 * 109.46709 * 209.99951 * 1 2 3 28 28 H 1.08994 * 109.46819 * 330.00206 * 1 2 3 29 29 H 1.09000 * 109.58125 * 6.62238 * 7 6 4 30 30 H 1.09000 * 109.58879 * 246.20390 * 7 6 4 31 31 H 1.08996 * 109.49650 * 294.68066 * 8 7 6 32 32 H 1.09011 * 109.49488 * 174.58985 * 8 7 6 33 33 H 1.08998 * 109.46575 * 178.61310 * 9 8 7 34 34 H 1.09003 * 109.45158 * 58.64575 * 9 8 7 35 35 H 0.96996 * 120.00285 * 334.99338 * 12 10 9 36 36 H 0.97003 * 119.99996 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.58618 * 113.79988 * 21 6 4 38 38 H 1.08997 * 109.59046 * 353.37416 * 21 6 4 39 39 H 1.08999 * 109.47216 * 270.24903 * 25 24 2 40 40 H 1.09003 * 109.46992 * 30.24964 * 25 24 2 41 41 H 1.09002 * 109.47089 * 150.24682 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5028 0.0008 5 8 0.6915 2.7646 -0.1092 6 7 2.7755 3.4968 0.1236 7 6 4.1876 3.1970 0.3972 8 6 5.0525 3.8881 -0.6616 9 6 4.7212 5.3819 -0.6896 10 6 3.2505 5.5729 -1.0674 11 1 3.0636 5.1213 -2.0417 12 7 2.9423 7.0040 -1.1246 13 6 1.9083 7.4511 -1.9031 14 1 1.3202 6.7487 -2.4753 15 6 1.6159 8.8070 -1.9570 16 7 0.6256 9.2373 -2.7095 17 14 2.6335 10.0219 -0.9680 18 1 3.7800 10.4899 -1.7875 19 1 1.7885 11.1830 -0.5900 20 1 3.1409 9.3584 0.2598 21 6 2.3651 4.9009 -0.0133 22 7 3.5985 0.6790 0.0051 23 7 3.6300 -0.6082 0.0034 24 7 2.3106 -1.0825 -0.0031 25 6 1.8866 -2.4848 -0.0067 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 4.3475 2.1197 0.3534 30 1 4.4549 3.5682 1.3866 31 1 4.8486 3.4518 -1.6393 32 1 6.1059 3.7536 -0.4152 33 1 5.3528 5.8803 -1.4250 34 1 4.9019 5.8123 0.2955 35 1 3.4706 7.6349 -0.6110 36 1 0.4210 10.1847 -2.7468 37 1 2.4838 5.4111 0.9426 38 1 1.3226 4.9480 -0.3279 39 1 1.7775 -2.8340 1.0201 40 1 0.9314 -2.5743 -0.5243 41 1 2.6352 -3.0895 -0.5185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998802630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:31 Heat of formation + Delta-G solvation = 64.015899 kcal Electronic energy + Delta-G solvation = -23934.977562 eV Core-core repulsion = 20466.038469 eV Total energy + Delta-G solvation = -3468.939094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.40324 -40.92049 -38.73759 -36.49904 -35.79010 -33.96712 -33.33840 -32.89969 -30.71037 -29.06485 -28.37508 -26.61188 -25.63509 -24.04772 -23.13688 -22.36644 -21.61863 -20.50184 -19.53816 -18.55014 -17.49125 -17.19748 -16.84246 -16.69733 -16.23440 -15.77922 -15.49863 -15.26946 -15.03037 -14.83499 -14.44677 -14.30407 -14.20781 -14.00257 -13.89753 -13.78632 -13.40636 -13.26342 -12.96674 -12.86440 -12.51899 -12.43941 -12.13501 -11.91665 -11.82957 -11.40463 -11.34928 -11.16594 -11.09884 -10.78033 -10.28075 -9.78433 -9.24180 -8.03102 -5.39083 0.07931 0.52485 1.09872 1.38540 1.43325 1.50350 1.94158 2.16123 2.48589 3.07267 3.27642 3.35049 3.54419 3.60636 3.67595 3.94335 4.06976 4.12893 4.32633 4.34755 4.35986 4.37791 4.54104 4.60490 4.66639 4.70613 4.73026 4.80351 4.86420 5.02443 5.04059 5.12442 5.26390 5.36433 5.44390 5.48127 5.64308 5.76916 6.20461 6.36981 6.81822 7.05013 7.10040 7.78152 8.00956 9.18606 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.003781 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.342319 B = 7403.887237 C = 8126.579418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.125 4.125 4 C 0.591 3.409 5 O -0.571 6.571 6 N -0.593 5.593 7 C 0.067 3.933 8 C -0.115 4.115 9 C -0.121 4.121 10 C 0.171 3.829 11 H 0.031 0.969 12 N -0.743 5.743 13 C -0.237 4.237 14 H 0.047 0.953 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.248 1.248 21 C 0.107 3.893 22 N -0.215 5.215 23 N -0.086 5.086 24 N -0.349 5.349 25 C 0.072 3.928 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.370 0.630 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -26.737 9.842 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.265 4.265 4 C 0.378 3.622 5 O -0.450 6.450 6 N -0.324 5.324 7 C -0.055 4.055 8 C -0.154 4.154 9 C -0.159 4.159 10 C 0.061 3.939 11 H 0.050 0.950 12 N -0.386 5.386 13 C -0.368 4.368 14 H 0.065 0.935 15 C -0.254 4.254 16 N -0.634 5.634 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.172 1.172 21 C -0.018 4.018 22 N -0.087 5.087 23 N -0.065 5.065 24 N -0.135 5.135 25 C -0.067 4.067 26 H 0.119 0.881 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.204 0.796 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.431 -27.088 9.629 29.693 hybrid contribution -0.950 1.525 0.072 1.799 sum 6.481 -25.563 9.701 28.099 Atomic orbital electron populations 1.20784 0.82594 1.06127 1.05538 1.22234 0.97325 0.85793 0.95340 1.21084 0.89849 0.94860 1.20662 1.17222 0.85056 0.83592 0.76306 1.90749 1.17358 1.83962 1.52949 1.48040 1.10049 1.05460 1.68831 1.22978 0.77754 1.06078 0.98699 1.21771 1.01046 0.93516 0.99061 1.21814 0.93990 0.97651 1.02482 1.20602 0.94538 0.83119 0.95595 0.95036 1.42653 1.37552 1.03280 1.55113 1.18978 1.06819 0.92096 1.18906 0.93466 1.25577 0.99743 0.98797 1.01314 1.69906 1.33626 1.14683 1.45193 0.85319 0.78070 0.78317 0.79511 1.20090 1.22254 1.17199 1.22259 0.99798 0.79710 1.00055 1.73985 1.18744 1.04243 1.11716 1.81871 0.97963 1.03331 1.23290 1.50547 1.05057 1.09250 1.48673 1.22752 1.04192 0.72960 1.06786 0.88070 0.86436 0.89473 0.83943 0.90623 0.92750 0.87479 0.91116 0.90564 0.79559 0.93230 0.91324 0.92773 0.87022 0.85694 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.32 71.24 0.66 -0.72 16 2 C 0.13 2.76 7.02 41.72 0.29 3.05 16 3 C -0.13 -3.57 6.75 40.82 0.28 -3.29 16 4 C 0.59 20.90 7.68 86.69 0.67 21.57 16 5 O -0.57 -23.31 14.24 -3.99 -0.06 -23.36 16 6 N -0.59 -20.32 2.97 -822.70 -2.45 -22.76 16 7 C 0.07 1.80 6.32 86.36 0.55 2.35 16 8 C -0.12 -2.92 6.08 30.67 0.19 -2.74 16 9 C -0.12 -3.68 5.35 30.62 0.16 -3.51 16 10 C 0.17 6.99 2.92 45.07 0.13 7.12 16 11 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 12 N -0.74 -35.97 4.93 -322.55 -1.59 -37.56 16 13 C -0.24 -14.16 10.41 84.03 0.88 -13.28 16 14 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 15 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 16 N -0.98 -65.05 13.97 21.65 0.30 -64.75 16 17 Si 0.96 46.21 27.74 68.60 1.90 48.11 16 18 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 20 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 21 C 0.11 4.29 6.00 86.36 0.52 4.80 16 22 N -0.21 -5.81 8.69 -49.99 -0.43 -6.25 16 23 N -0.09 -1.99 13.78 37.02 0.51 -1.48 16 24 N -0.35 -5.74 4.03 -355.09 -1.43 -7.17 16 25 C 0.07 0.27 11.17 127.77 1.43 1.70 16 26 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.12 0.70 7.84 -2.39 -0.02 0.68 16 28 H 0.09 1.85 6.57 -2.39 -0.02 1.83 16 29 H 0.14 3.77 3.65 -94.41 -0.34 3.43 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.37 16.71 5.66 -92.71 -0.52 16.19 16 36 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.05 2.59 7.05 -2.39 -0.02 2.58 16 39 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.12 -0.16 7.78 -2.39 -0.02 -0.18 16 41 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -82.21 331.89 3.11 -79.10 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.13 Total: 22.42 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.21 Total: 13.69 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -5.09 Total: -139.97 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -82.21 3.11 -79.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998802630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.120 kcal (2) G-P(sol) polarization free energy of solvation -82.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds