Wall clock time and date at job start Tue Mar 31 2020 03:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36593 * 126.58223 * 2 1 4 4 C 1.47531 * 125.77180 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99315 * 353.44342 * 4 3 2 6 6 N 1.34768 * 120.00026 * 173.44091 * 4 3 2 7 7 C 1.46939 * 120.60943 * 352.67250 * 6 4 3 8 8 C 1.53190 * 108.77030 * 233.57705 * 7 6 4 9 9 C 1.53041 * 109.34016 * 305.40810 * 8 7 6 10 10 C 1.53039 * 109.53484 * 61.35148 * 9 8 7 11 11 H 1.08996 * 109.49935 * 58.58768 * 10 9 8 12 12 N 1.46498 * 109.49625 * 178.68207 * 10 9 8 13 13 C 1.36944 * 120.00076 * 204.99678 * 12 10 9 14 14 H 1.07999 * 119.99814 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99745 * 179.97438 * 13 12 10 16 16 N 1.31615 * 119.99733 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00225 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47281 * 89.99764 * 17 15 13 19 19 H 1.48504 * 109.46940 * 209.99691 * 17 15 13 20 20 H 1.48500 * 109.47084 * 329.99583 * 17 15 13 21 21 C 1.46927 * 120.63151 * 172.69044 * 6 4 3 22 22 N 1.34402 * 108.46176 * 180.24230 * 3 2 1 23 23 N 1.28761 * 109.51863 * 359.58696 * 22 3 2 24 24 N 1.34814 * 126.57915 * 179.97438 * 2 1 3 25 25 C 1.46503 * 126.59505 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.46963 * 89.99682 * 1 2 3 27 27 H 1.08995 * 109.47248 * 210.00479 * 1 2 3 28 28 H 1.09006 * 109.46725 * 330.00152 * 1 2 3 29 29 H 1.09000 * 109.56163 * 113.80295 * 7 6 4 30 30 H 1.08998 * 109.61121 * 353.37717 * 7 6 4 31 31 H 1.09005 * 109.49318 * 185.44456 * 8 7 6 32 32 H 1.08998 * 109.50104 * 65.37694 * 8 7 6 33 33 H 1.08999 * 109.46019 * 181.36860 * 9 8 7 34 34 H 1.08996 * 109.46187 * 301.33363 * 9 8 7 35 35 H 0.96999 * 119.99836 * 25.00348 * 12 10 9 36 36 H 0.96998 * 120.00558 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.58258 * 6.60392 * 21 6 4 38 38 H 1.08999 * 109.70699 * 246.25148 * 21 6 4 39 39 H 1.09000 * 109.47116 * 89.99758 * 25 24 2 40 40 H 1.09001 * 109.46604 * 209.99405 * 25 24 2 41 41 H 1.08995 * 109.46818 * 329.99296 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6926 2.7648 -0.1213 6 7 2.7744 3.4964 0.1328 7 6 4.1798 3.1962 0.4393 8 6 4.5967 3.9980 1.6763 9 6 4.3076 5.4821 1.4394 10 6 2.8066 5.6820 1.2176 11 1 2.2588 5.3190 2.0872 12 7 2.5267 7.1066 1.0222 13 6 1.2845 7.6062 1.3101 14 1 0.5114 6.9499 1.6816 15 6 1.0195 8.9562 1.1255 16 7 -0.1741 9.4364 1.4027 17 14 2.3570 10.0914 0.4837 18 1 2.3019 10.1321 -0.9998 19 1 2.1475 11.4584 1.0246 20 1 3.6847 9.5860 0.9160 21 6 2.3695 4.8999 -0.0250 22 7 3.5984 0.6788 -0.0054 23 7 3.6299 -0.6084 0.0000 24 7 2.3104 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0006 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 4.8062 3.4781 -0.4071 30 1 4.2910 2.1307 0.6400 31 1 5.6626 3.8594 1.8573 32 1 4.0325 3.6511 2.5419 33 1 4.6259 6.0573 2.3088 34 1 4.8532 5.8224 0.5594 35 1 3.2212 7.6961 0.6888 36 1 -0.3595 10.3797 1.2734 37 1 1.2862 4.9579 -0.1310 38 1 2.8463 5.3228 -0.9093 39 1 1.7815 -2.8329 -1.0271 40 1 2.6330 -3.0902 0.5147 41 1 0.9292 -2.5749 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998802631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:36 Heat of formation + Delta-G solvation = 88.819992 kcal Electronic energy + Delta-G solvation = -23908.301772 eV Core-core repulsion = 20440.438264 eV Total energy + Delta-G solvation = -3467.863508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46864 -39.58895 -37.27783 -35.31517 -34.39181 -32.50938 -32.21613 -31.22208 -29.20813 -27.98017 -27.75082 -25.33125 -23.76274 -22.95450 -21.61103 -21.35920 -20.29435 -19.20541 -17.48458 -17.43419 -16.66224 -16.02492 -15.79590 -15.02358 -14.70558 -14.41734 -14.17295 -13.98844 -13.88644 -13.55320 -13.50648 -13.28079 -13.08263 -12.77256 -12.63629 -12.43966 -12.36277 -12.14042 -11.67286 -11.24178 -11.03542 -10.85158 -10.60330 -10.51146 -10.24357 -10.09833 -9.81816 -9.67969 -9.52907 -9.27198 -9.04818 -8.27086 -7.24144 -5.73161 -3.09937 0.94183 1.63211 1.79492 3.19897 3.39320 3.40809 3.43318 3.48379 4.02070 4.07238 4.37909 4.53210 4.56934 4.62115 4.81821 5.00184 5.05974 5.22755 5.25440 5.35942 5.37974 5.44932 5.52216 5.60904 5.72789 5.80931 5.90859 6.03593 6.10725 6.18795 6.20519 6.28846 6.39867 6.48600 6.80166 6.80416 7.00653 7.63987 7.82549 8.03715 8.38077 8.46185 9.23427 9.95238 10.14357 11.44991 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.003753 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.293633 B = 7459.576266 C = 8201.536404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.121 3.879 3 C -0.095 4.095 4 C 0.597 3.403 5 O -0.535 6.535 6 N -0.590 5.590 7 C 0.085 3.915 8 C -0.128 4.128 9 C -0.130 4.130 10 C 0.174 3.826 11 H 0.060 0.940 12 N -0.743 5.743 13 C -0.246 4.246 14 H 0.092 0.908 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.276 1.276 21 C 0.093 3.907 22 N -0.202 5.202 23 N -0.076 5.076 24 N -0.366 5.366 25 C 0.088 3.912 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -25.012 -2.676 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.016 4.016 3 C -0.234 4.234 4 C 0.382 3.618 5 O -0.412 6.412 6 N -0.322 5.322 7 C -0.039 4.039 8 C -0.167 4.167 9 C -0.168 4.168 10 C 0.063 3.937 11 H 0.078 0.922 12 N -0.385 5.385 13 C -0.375 4.375 14 H 0.110 0.890 15 C -0.190 4.190 16 N -0.580 5.580 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.031 4.031 22 N -0.074 5.074 23 N -0.054 5.054 24 N -0.152 5.152 25 C -0.053 4.053 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.355 -25.251 -2.663 26.435 hybrid contribution 0.031 1.015 -0.542 1.151 sum 7.386 -24.236 -3.206 25.538 Atomic orbital electron populations 1.20710 0.84524 1.05310 1.04749 1.21932 0.96307 0.86217 0.97130 1.21356 0.88720 0.95722 1.17643 1.16796 0.85418 0.82304 0.77237 1.90787 1.15903 1.83100 1.51421 1.47991 1.09188 1.06744 1.68259 1.22473 0.80959 1.03224 0.97216 1.21871 1.01047 0.95673 0.98105 1.21880 0.97574 0.95499 1.01885 1.20454 0.92992 0.84976 0.95281 0.92235 1.42740 1.12566 1.03284 1.79919 1.19120 0.88157 0.93299 1.36954 0.89016 1.24674 0.96310 0.96655 1.01342 1.69703 1.20114 1.13673 1.54479 0.86560 0.82117 0.80972 0.78950 1.21063 1.21776 1.20266 1.22721 1.02870 0.77442 1.00066 1.74378 1.18914 1.03528 1.10624 1.81979 0.96148 1.03944 1.23373 1.50225 1.06460 1.07701 1.50809 1.22153 1.02422 0.76125 1.04639 0.88884 0.90792 0.86903 0.91788 0.86041 0.91015 0.91763 0.91515 0.92194 0.80479 0.93061 0.88554 0.91987 0.89317 0.88131 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.51 36.01 0.34 -0.46 16 2 C 0.12 1.36 7.02 -81.88 -0.57 0.79 16 3 C -0.10 -1.36 6.70 -83.55 -0.56 -1.92 16 4 C 0.60 10.17 7.67 -12.48 -0.10 10.08 16 5 O -0.54 -10.34 14.23 5.28 0.08 -10.26 16 6 N -0.59 -9.88 2.97 -173.99 -0.52 -10.40 16 7 C 0.08 1.19 6.08 -3.70 -0.02 1.17 16 8 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 9 C -0.13 -2.07 5.36 -26.69 -0.14 -2.22 16 10 C 0.17 3.46 2.92 -67.81 -0.20 3.26 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 12 N -0.74 -17.77 4.93 -53.31 -0.26 -18.03 16 13 C -0.25 -7.02 10.41 -15.06 -0.16 -7.18 16 14 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -29.64 13.97 55.49 0.78 -28.87 16 17 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C 0.09 1.79 6.03 -3.71 -0.02 1.77 16 22 N -0.20 -2.83 8.79 32.85 0.29 -2.54 16 23 N -0.08 -0.95 13.78 60.35 0.83 -0.12 16 24 N -0.37 -3.49 4.03 -63.59 -0.26 -3.75 16 25 C 0.09 0.34 11.33 59.85 0.68 1.02 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.37 7.18 -51.93 -0.37 0.00 16 28 H 0.11 1.23 6.59 -51.93 -0.34 0.89 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.12 1.68 4.12 -78.53 -0.32 1.35 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.10 2.13 7.00 -51.93 -0.36 1.77 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.16 7.16 -51.93 -0.37 -0.21 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -35.33 331.21 -5.62 -40.95 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.82 Total: 5.97 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.01 Total: 4.50 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 0.86 Total: -63.69 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.33 -5.62 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998802631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.773 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds