Wall clock time and date at job start Tue Mar 31 2020 03:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36593 * 126.58223 * 2 1 4 4 C 1.47531 * 125.77180 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99315 * 353.44342 * 4 3 2 6 6 N 1.34768 * 120.00026 * 173.44091 * 4 3 2 7 7 C 1.46939 * 120.60943 * 352.67250 * 6 4 3 8 8 C 1.53190 * 108.77030 * 233.57705 * 7 6 4 9 9 C 1.53041 * 109.34016 * 305.40810 * 8 7 6 10 10 C 1.53039 * 109.53484 * 61.35148 * 9 8 7 11 11 H 1.08996 * 109.49935 * 58.58768 * 10 9 8 12 12 N 1.46498 * 109.49625 * 178.68207 * 10 9 8 13 13 C 1.36944 * 120.00076 * 204.99678 * 12 10 9 14 14 H 1.07999 * 119.99814 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99745 * 179.97438 * 13 12 10 16 16 N 1.31615 * 119.99733 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00225 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47281 * 89.99764 * 17 15 13 19 19 H 1.48504 * 109.46940 * 209.99691 * 17 15 13 20 20 H 1.48500 * 109.47084 * 329.99583 * 17 15 13 21 21 C 1.46927 * 120.63151 * 172.69044 * 6 4 3 22 22 N 1.34402 * 108.46176 * 180.24230 * 3 2 1 23 23 N 1.28761 * 109.51863 * 359.58696 * 22 3 2 24 24 N 1.34814 * 126.57915 * 179.97438 * 2 1 3 25 25 C 1.46503 * 126.59505 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.46963 * 89.99682 * 1 2 3 27 27 H 1.08995 * 109.47248 * 210.00479 * 1 2 3 28 28 H 1.09006 * 109.46725 * 330.00152 * 1 2 3 29 29 H 1.09000 * 109.56163 * 113.80295 * 7 6 4 30 30 H 1.08998 * 109.61121 * 353.37717 * 7 6 4 31 31 H 1.09005 * 109.49318 * 185.44456 * 8 7 6 32 32 H 1.08998 * 109.50104 * 65.37694 * 8 7 6 33 33 H 1.08999 * 109.46019 * 181.36860 * 9 8 7 34 34 H 1.08996 * 109.46187 * 301.33363 * 9 8 7 35 35 H 0.96999 * 119.99836 * 25.00348 * 12 10 9 36 36 H 0.96998 * 120.00558 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.58258 * 6.60392 * 21 6 4 38 38 H 1.08999 * 109.70699 * 246.25148 * 21 6 4 39 39 H 1.09000 * 109.47116 * 89.99758 * 25 24 2 40 40 H 1.09001 * 109.46604 * 209.99405 * 25 24 2 41 41 H 1.08995 * 109.46818 * 329.99296 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6926 2.7648 -0.1213 6 7 2.7744 3.4964 0.1328 7 6 4.1798 3.1962 0.4393 8 6 4.5967 3.9980 1.6763 9 6 4.3076 5.4821 1.4394 10 6 2.8066 5.6820 1.2176 11 1 2.2588 5.3190 2.0872 12 7 2.5267 7.1066 1.0222 13 6 1.2845 7.6062 1.3101 14 1 0.5114 6.9499 1.6816 15 6 1.0195 8.9562 1.1255 16 7 -0.1741 9.4364 1.4027 17 14 2.3570 10.0914 0.4837 18 1 2.3019 10.1321 -0.9998 19 1 2.1475 11.4584 1.0246 20 1 3.6847 9.5860 0.9160 21 6 2.3695 4.8999 -0.0250 22 7 3.5984 0.6788 -0.0054 23 7 3.6299 -0.6084 0.0000 24 7 2.3104 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0006 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 4.8062 3.4781 -0.4071 30 1 4.2910 2.1307 0.6400 31 1 5.6626 3.8594 1.8573 32 1 4.0325 3.6511 2.5419 33 1 4.6259 6.0573 2.3088 34 1 4.8532 5.8224 0.5594 35 1 3.2212 7.6961 0.6888 36 1 -0.3595 10.3797 1.2734 37 1 1.2862 4.9579 -0.1310 38 1 2.8463 5.3228 -0.9093 39 1 1.7815 -2.8329 -1.0271 40 1 2.6330 -3.0902 0.5147 41 1 0.9292 -2.5749 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998802631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:36 Heat of formation + Delta-G solvation = 62.342310 kcal Electronic energy + Delta-G solvation = -23909.449930 eV Core-core repulsion = 20440.438264 eV Total energy + Delta-G solvation = -3469.011666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.38983 -40.92514 -38.72867 -36.48507 -35.79222 -33.97040 -33.33019 -32.91240 -30.70161 -29.06326 -28.37436 -26.60225 -25.63297 -24.04541 -23.14366 -22.30357 -21.65031 -20.48848 -19.54022 -18.52715 -17.52182 -17.23561 -16.84109 -16.64728 -16.22656 -15.82272 -15.43026 -15.22896 -15.07290 -14.83379 -14.40817 -14.27751 -14.16157 -14.03433 -13.90163 -13.79452 -13.44099 -13.21264 -12.96286 -12.89472 -12.56869 -12.40487 -12.06873 -11.91834 -11.81885 -11.48185 -11.37776 -11.15810 -11.10193 -10.84368 -10.27198 -9.78762 -9.23737 -8.02511 -5.38518 0.08288 0.54021 1.10311 1.38722 1.43410 1.50546 1.93524 2.15984 2.48990 3.08719 3.28072 3.35564 3.54089 3.60249 3.69012 3.94869 4.07067 4.11731 4.30013 4.33830 4.35627 4.38219 4.50955 4.61446 4.66337 4.70173 4.73356 4.83562 4.87373 5.01905 5.03646 5.11020 5.21162 5.35451 5.43135 5.47992 5.59749 5.77307 6.21039 6.36728 6.81509 7.05670 7.10085 7.78830 8.01497 9.19187 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.003753 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.293633 B = 7459.576266 C = 8201.536404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.126 4.126 4 C 0.591 3.409 5 O -0.571 6.571 6 N -0.593 5.593 7 C 0.084 3.916 8 C -0.120 4.120 9 C -0.121 4.121 10 C 0.171 3.829 11 H 0.032 0.968 12 N -0.743 5.743 13 C -0.236 4.236 14 H 0.048 0.952 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.961 3.039 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.245 1.245 21 C 0.106 3.894 22 N -0.214 5.214 23 N -0.088 5.088 24 N -0.350 5.350 25 C 0.072 3.928 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.370 0.630 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 -27.233 -3.278 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.265 4.265 4 C 0.379 3.621 5 O -0.450 6.450 6 N -0.325 5.325 7 C -0.038 4.038 8 C -0.158 4.158 9 C -0.159 4.159 10 C 0.062 3.938 11 H 0.050 0.950 12 N -0.386 5.386 13 C -0.367 4.367 14 H 0.066 0.934 15 C -0.255 4.255 16 N -0.634 5.634 17 Si 0.787 3.213 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.170 1.170 21 C -0.019 4.019 22 N -0.087 5.087 23 N -0.067 5.067 24 N -0.136 5.136 25 C -0.067 4.067 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.204 0.796 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.046 -27.565 -3.263 29.519 hybrid contribution -0.897 1.468 -0.329 1.751 sum 9.149 -26.097 -3.592 27.887 Atomic orbital electron populations 1.20780 0.82686 1.05947 1.05588 1.22220 0.97291 0.85876 0.95381 1.21069 0.89878 0.94828 1.20760 1.17223 0.84968 0.83588 0.76372 1.90761 1.17362 1.83932 1.52973 1.48036 1.10551 1.05512 1.68370 1.22684 0.79216 1.03910 0.98013 1.21859 1.03155 0.93431 0.97391 1.21801 0.93770 0.97530 1.02784 1.20593 0.96028 0.82799 0.94392 0.94993 1.42650 1.10912 1.05097 1.79978 1.18981 0.89122 0.92916 1.35692 0.93423 1.25573 0.99102 0.98493 1.02283 1.69905 1.22909 1.14050 1.56568 0.85334 0.79937 0.77809 0.78229 1.20386 1.22199 1.16959 1.22260 1.00363 0.79432 0.99858 1.74283 1.18829 1.04306 1.11271 1.81869 0.97874 1.03341 1.23577 1.50550 1.05106 1.09229 1.48680 1.22746 1.04226 0.72996 1.06685 0.87804 0.86550 0.89787 0.90353 0.85327 0.87335 0.92607 0.91178 0.90502 0.79572 0.93250 0.92679 0.91154 0.87259 0.86743 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.51 71.24 0.68 -0.73 16 2 C 0.13 2.76 7.02 41.72 0.29 3.05 16 3 C -0.13 -3.58 6.70 40.82 0.27 -3.31 16 4 C 0.59 20.86 7.67 86.70 0.67 21.53 16 5 O -0.57 -23.47 14.23 -4.01 -0.06 -23.53 16 6 N -0.59 -20.19 2.97 -822.65 -2.45 -22.63 16 7 C 0.08 2.23 6.08 86.36 0.53 2.75 16 8 C -0.12 -2.95 6.08 30.67 0.19 -2.76 16 9 C -0.12 -3.61 5.36 30.62 0.16 -3.45 16 10 C 0.17 6.94 2.92 45.07 0.13 7.07 16 11 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 12 N -0.74 -35.80 4.93 -322.58 -1.59 -37.39 16 13 C -0.24 -14.06 10.41 84.03 0.88 -13.19 16 14 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 15 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 16 N -0.98 -64.99 13.97 21.65 0.30 -64.69 16 17 Si 0.96 46.10 27.74 68.60 1.90 48.01 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 21 C 0.11 4.21 6.03 86.36 0.52 4.73 16 22 N -0.21 -5.77 8.79 -49.99 -0.44 -6.20 16 23 N -0.09 -2.03 13.78 37.02 0.51 -1.52 16 24 N -0.35 -5.77 4.03 -355.10 -1.43 -7.20 16 25 C 0.07 0.28 11.33 127.77 1.45 1.73 16 26 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.12 0.75 7.18 -2.39 -0.02 0.73 16 28 H 0.08 1.88 6.59 -2.38 -0.02 1.86 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.13 3.37 4.12 -36.80 -0.15 3.22 16 31 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.37 16.62 5.66 -92.71 -0.52 16.10 16 36 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 37 H 0.05 2.63 7.00 -2.39 -0.02 2.61 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.13 -0.19 7.16 -2.39 -0.02 -0.21 16 Total: -1.00 -82.13 331.21 3.31 -78.82 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.33 Total: 22.27 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.23 Total: 14.06 kcal Atomic # 7 Polarization: -134.54 SS G_CDS: -5.09 Total: -139.63 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.01 kcal Total: -82.13 3.31 -78.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998802631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.165 kcal (2) G-P(sol) polarization free energy of solvation -82.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds