Wall clock time and date at job start Tue Mar 31 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99692 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00300 * 3 2 1 5 5 H 1.48497 * 109.47589 * 30.00787 * 3 2 1 6 6 H 1.48504 * 109.46616 * 150.00614 * 3 2 1 7 7 C 1.38813 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99279 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99944 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.52308 * 35.07317 * 10 9 7 12 12 C 1.53034 * 109.49998 * 155.15770 * 10 9 7 13 13 C 1.53039 * 109.54010 * 181.31541 * 12 10 9 14 14 C 1.53629 * 109.23895 * 298.51238 * 13 12 10 15 15 N 1.46925 * 108.54312 * 54.85322 * 14 13 12 16 16 C 1.34778 * 120.62761 * 126.36844 * 15 14 13 17 17 O 1.21276 * 119.99925 * 179.71972 * 16 15 14 18 18 C 1.50701 * 120.00157 * 359.72082 * 16 15 14 19 19 C 1.52998 * 109.47243 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.46863 * 180.02562 * 19 18 16 21 21 N 1.33241 * 125.52736 * 269.99415 * 20 19 18 22 22 C 1.30834 * 109.83169 * 180.02562 * 21 20 19 23 23 N 1.34423 * 108.07591 * 0.02562 * 22 21 20 24 24 H 0.96997 * 126.82715 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52961 * 90.00599 * 20 19 18 26 26 C 1.46924 * 118.74301 * 306.09520 * 15 14 13 27 27 H 0.97002 * 119.99784 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00043 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.45812 * 301.33985 * 12 10 9 30 30 H 1.08999 * 109.45825 * 61.30645 * 12 10 9 31 31 H 1.08996 * 109.49622 * 58.58259 * 13 12 10 32 32 H 1.09002 * 109.49734 * 178.68778 * 13 12 10 33 33 H 1.09001 * 109.73778 * 295.11427 * 14 13 12 34 34 H 1.08999 * 109.66205 * 174.54735 * 14 13 12 35 35 H 1.09002 * 109.47261 * 59.99780 * 18 16 15 36 36 H 1.09007 * 109.47239 * 300.00148 * 18 16 15 37 37 H 1.08997 * 109.46912 * 60.00408 * 19 18 16 38 38 H 1.08997 * 109.46973 * 299.99713 * 19 18 16 39 39 H 1.07998 * 125.96050 * 180.02562 * 22 21 20 40 40 H 1.08992 * 109.59021 * 173.64869 * 26 15 14 41 41 H 1.09004 * 109.58439 * 293.92903 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9684 -3.5519 0.5898 12 6 1.1797 -4.7538 0.6055 13 6 1.9559 -6.0724 0.6361 14 6 2.3167 -6.4808 -0.8003 15 7 3.0397 -5.3699 -1.4343 16 6 4.2438 -5.5714 -2.0054 17 8 4.8283 -4.6473 -2.5300 18 6 4.8637 -6.9449 -1.9922 19 6 6.2186 -6.8998 -2.7015 20 6 6.8382 -8.2735 -2.6888 21 7 7.6423 -8.7515 -1.7400 22 6 8.0020 -9.9738 -2.0372 23 7 7.4240 -10.3065 -3.2043 24 1 7.5072 -11.1508 -3.6745 25 7 6.6741 -9.1893 -3.6069 26 6 2.4226 -4.0366 -1.4392 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 0.8986 -4.4742 1.6209 30 1 0.2813 -4.8753 0.0004 31 1 2.8671 -5.9447 1.2204 32 1 1.3380 -6.8478 1.0891 33 1 1.4071 -6.6928 -1.3623 34 1 2.9517 -7.3665 -0.7812 35 1 4.2069 -7.6450 -2.5086 36 1 5.0034 -7.2707 -0.9614 37 1 6.8756 -6.1998 -2.1855 38 1 6.0784 -6.5744 -3.7322 39 1 8.6502 -10.6052 -1.4477 40 1 3.1274 -3.3092 -1.8417 41 1 1.5229 -4.0527 -2.0543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998856663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:34 Heat of formation + Delta-G solvation = 56.511839 kcal Electronic energy + Delta-G solvation = -23096.750873 eV Core-core repulsion = 19627.486379 eV Total energy + Delta-G solvation = -3469.264494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41309 -39.90751 -37.34892 -34.51475 -34.34066 -32.37236 -32.16756 -31.19517 -30.74219 -28.29829 -26.09867 -24.30712 -23.76348 -23.00828 -21.84922 -20.58070 -19.98463 -18.67124 -18.63867 -17.05549 -16.97038 -15.92984 -15.89863 -15.33446 -15.19065 -14.68879 -14.24115 -14.05782 -13.68360 -13.49053 -13.27832 -12.97113 -12.62159 -12.44620 -12.33044 -12.27110 -12.12797 -11.30566 -11.25826 -11.00432 -10.80949 -10.63275 -10.54127 -10.41650 -10.34310 -10.16952 -10.01656 -9.78454 -9.70606 -9.45796 -9.02912 -8.28430 -6.96296 -5.75473 -3.05039 1.26878 2.32229 2.55392 2.87917 3.27318 3.48262 3.53441 3.55253 3.83263 4.35070 4.58573 4.61659 4.78572 4.87701 5.01446 5.05108 5.13592 5.29615 5.39611 5.52445 5.59062 5.69742 5.78244 5.82773 5.84459 5.92154 5.97154 6.08204 6.16494 6.20712 6.25256 6.39101 6.53876 6.66415 6.78721 6.87485 7.05924 7.72333 7.75479 7.76317 8.41922 8.45992 9.54645 10.08888 10.44138 11.46873 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.003015 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.198809 B = 9284.211814 C = 9983.276875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.130 4.130 19 C -0.013 4.013 20 C 0.235 3.765 21 N -0.539 5.539 22 C 0.260 3.740 23 N -0.488 5.488 24 H 0.441 0.559 25 N -0.314 5.314 26 C 0.092 3.908 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.222 0.778 40 H 0.091 0.909 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -25.379 -2.713 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.341 5.341 16 C 0.300 3.700 17 O -0.419 6.419 18 C -0.172 4.172 19 C -0.053 4.053 20 C -0.048 4.048 21 N -0.267 5.267 22 C -0.040 4.040 23 N -0.206 5.206 24 H 0.286 0.714 25 N -0.143 5.143 26 C -0.032 4.032 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.239 0.761 40 H 0.109 0.891 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.010 -24.372 -3.292 26.946 hybrid contribution 0.288 -0.021 -0.184 0.342 sum 11.298 -24.394 -3.477 27.107 Atomic orbital electron populations 1.69666 1.05121 1.25718 1.57632 1.24746 0.95520 0.97754 1.02753 0.86182 0.78704 0.83683 0.77622 1.21611 1.21810 1.20653 1.19280 0.91121 0.83978 1.42812 0.91016 1.42380 1.05792 0.99617 1.88142 1.20492 0.94879 0.86389 0.92507 0.93114 1.21822 0.98689 0.94153 1.01787 1.21959 1.00939 0.98152 0.95822 1.21828 0.96894 0.89029 0.93913 1.48279 1.18738 1.11001 1.56034 1.20419 0.81039 0.90272 0.78292 1.90713 1.61559 1.44415 1.45186 1.21584 0.96479 0.95981 1.03128 1.19698 0.94898 0.87098 1.03601 1.24381 0.94909 0.97291 0.88181 1.70476 1.17616 1.09093 1.29542 1.26148 0.96727 0.93656 0.87429 1.48162 1.37747 1.15354 1.19347 0.71385 1.78062 1.17714 0.94953 1.23567 1.22764 0.97812 0.81714 1.00924 0.93506 0.78101 0.91444 0.92081 0.91492 0.91116 0.91422 0.90331 0.88972 0.88497 0.87994 0.88582 0.76136 0.89102 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.72 -18.03 5.13 -53.31 -0.27 -18.31 16 10 C 0.17 3.37 2.92 -67.81 -0.20 3.18 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.13 -1.99 5.35 -26.69 -0.14 -2.13 16 13 C -0.13 -1.55 6.10 -26.38 -0.16 -1.71 16 14 C 0.11 1.22 6.37 -3.48 -0.02 1.20 16 15 N -0.61 -9.32 2.97 -172.50 -0.51 -9.83 16 16 C 0.51 8.02 7.70 -10.98 -0.08 7.93 16 17 O -0.54 -10.67 15.39 5.56 0.09 -10.59 16 18 C -0.13 -1.48 4.03 -27.88 -0.11 -1.59 16 19 C -0.01 -0.15 5.13 -27.88 -0.14 -0.29 16 20 C 0.23 2.71 7.39 -156.85 -1.16 1.55 16 21 N -0.54 -5.78 11.19 -11.98 -0.13 -5.91 16 22 C 0.26 1.65 13.13 -90.66 -1.19 0.46 16 23 N -0.49 -3.19 7.45 29.53 0.22 -2.97 16 24 H 0.44 1.15 8.96 -182.34 -1.63 -0.48 16 25 N -0.31 -3.43 12.80 32.42 0.41 -3.01 16 26 C 0.09 1.77 6.01 -3.71 -0.02 1.75 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.69 5.93 -51.93 -0.31 0.39 16 35 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 36 H 0.10 0.99 7.70 -51.93 -0.40 0.59 16 37 H 0.10 1.30 8.10 -51.93 -0.42 0.87 16 38 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.22 0.24 8.06 -52.49 -0.42 -0.18 16 40 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -36.33 341.07 -10.04 -46.37 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.20 Total: 5.84 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -3.48 Total: 2.95 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: 0.44 Total: -67.61 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.33 -10.04 -46.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.883 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds