Wall clock time and date at job start Tue Mar 31 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99692 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00300 * 3 2 1 5 5 H 1.48497 * 109.47589 * 30.00787 * 3 2 1 6 6 H 1.48504 * 109.46616 * 150.00614 * 3 2 1 7 7 C 1.38813 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99279 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99944 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.52308 * 35.07317 * 10 9 7 12 12 C 1.53034 * 109.49998 * 155.15770 * 10 9 7 13 13 C 1.53039 * 109.54010 * 181.31541 * 12 10 9 14 14 C 1.53629 * 109.23895 * 298.51238 * 13 12 10 15 15 N 1.46925 * 108.54312 * 54.85322 * 14 13 12 16 16 C 1.34778 * 120.62761 * 126.36844 * 15 14 13 17 17 O 1.21276 * 119.99925 * 179.71972 * 16 15 14 18 18 C 1.50701 * 120.00157 * 359.72082 * 16 15 14 19 19 C 1.52998 * 109.47243 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.46863 * 180.02562 * 19 18 16 21 21 N 1.33241 * 125.52736 * 269.99415 * 20 19 18 22 22 C 1.30834 * 109.83169 * 180.02562 * 21 20 19 23 23 N 1.34423 * 108.07591 * 0.02562 * 22 21 20 24 24 H 0.96997 * 126.82715 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52961 * 90.00599 * 20 19 18 26 26 C 1.46924 * 118.74301 * 306.09520 * 15 14 13 27 27 H 0.97002 * 119.99784 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00043 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.45812 * 301.33985 * 12 10 9 30 30 H 1.08999 * 109.45825 * 61.30645 * 12 10 9 31 31 H 1.08996 * 109.49622 * 58.58259 * 13 12 10 32 32 H 1.09002 * 109.49734 * 178.68778 * 13 12 10 33 33 H 1.09001 * 109.73778 * 295.11427 * 14 13 12 34 34 H 1.08999 * 109.66205 * 174.54735 * 14 13 12 35 35 H 1.09002 * 109.47261 * 59.99780 * 18 16 15 36 36 H 1.09007 * 109.47239 * 300.00148 * 18 16 15 37 37 H 1.08997 * 109.46912 * 60.00408 * 19 18 16 38 38 H 1.08997 * 109.46973 * 299.99713 * 19 18 16 39 39 H 1.07998 * 125.96050 * 180.02562 * 22 21 20 40 40 H 1.08992 * 109.59021 * 173.64869 * 26 15 14 41 41 H 1.09004 * 109.58439 * 293.92903 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9684 -3.5519 0.5898 12 6 1.1797 -4.7538 0.6055 13 6 1.9559 -6.0724 0.6361 14 6 2.3167 -6.4808 -0.8003 15 7 3.0397 -5.3699 -1.4343 16 6 4.2438 -5.5714 -2.0054 17 8 4.8283 -4.6473 -2.5300 18 6 4.8637 -6.9449 -1.9922 19 6 6.2186 -6.8998 -2.7015 20 6 6.8382 -8.2735 -2.6888 21 7 7.6423 -8.7515 -1.7400 22 6 8.0020 -9.9738 -2.0372 23 7 7.4240 -10.3065 -3.2043 24 1 7.5072 -11.1508 -3.6745 25 7 6.6741 -9.1893 -3.6069 26 6 2.4226 -4.0366 -1.4392 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 0.8986 -4.4742 1.6209 30 1 0.2813 -4.8753 0.0004 31 1 2.8671 -5.9447 1.2204 32 1 1.3380 -6.8478 1.0891 33 1 1.4071 -6.6928 -1.3623 34 1 2.9517 -7.3665 -0.7812 35 1 4.2069 -7.6450 -2.5086 36 1 5.0034 -7.2707 -0.9614 37 1 6.8756 -6.1998 -2.1855 38 1 6.0784 -6.5744 -3.7322 39 1 8.6502 -10.6052 -1.4477 40 1 3.1274 -3.3092 -1.8417 41 1 1.5229 -4.0527 -2.0543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998856663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:33 Heat of formation + Delta-G solvation = 30.781979 kcal Electronic energy + Delta-G solvation = -23097.866604 eV Core-core repulsion = 19627.486379 eV Total energy + Delta-G solvation = -3470.380225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.05263 -41.18808 -38.74719 -36.19459 -35.29964 -33.89999 -32.96084 -32.68903 -31.64903 -29.96517 -27.26110 -25.87269 -25.23380 -23.60146 -23.22661 -21.71942 -21.08274 -19.89565 -19.23575 -19.11070 -18.14961 -17.02064 -16.91294 -16.60757 -16.22007 -15.95633 -15.63960 -15.43191 -15.26540 -14.93411 -14.48379 -14.08221 -13.95213 -13.66230 -13.57086 -13.31073 -13.08001 -12.98133 -12.89669 -12.48888 -12.20429 -12.17816 -11.98870 -11.87500 -11.65649 -11.32495 -11.10717 -11.07625 -11.03226 -10.83903 -10.61476 -9.70983 -9.00380 -7.98481 -5.27497 0.66872 1.44314 1.46475 1.54586 1.64662 1.79140 1.87958 2.12218 2.54068 3.16129 3.34742 3.60685 3.74074 3.77308 3.98516 4.05859 4.08151 4.17567 4.25803 4.34606 4.37267 4.41810 4.52307 4.66348 4.78709 4.89534 4.91289 4.94972 4.98645 5.08279 5.16810 5.27310 5.37734 5.40877 5.44873 5.49129 5.61098 6.24530 6.30170 6.50365 7.13829 7.20688 7.30952 8.03628 8.28704 9.24260 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.003015 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.198809 B = 9284.211814 C = 9983.276875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.031 0.969 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.101 3.899 15 N -0.606 5.606 16 C 0.506 3.494 17 O -0.592 6.592 18 C -0.111 4.111 19 C -0.009 4.009 20 C 0.224 3.776 21 N -0.579 5.579 22 C 0.278 3.722 23 N -0.475 5.475 24 H 0.458 0.542 25 N -0.343 5.343 26 C 0.107 3.893 27 H 0.253 0.747 28 H 0.377 0.623 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.274 0.726 40 H 0.047 0.953 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.756 -28.892 -2.042 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.050 0.950 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.020 4.020 15 N -0.339 5.339 16 C 0.296 3.704 17 O -0.473 6.473 18 C -0.152 4.152 19 C -0.050 4.050 20 C -0.059 4.059 21 N -0.308 5.308 22 C -0.020 4.020 23 N -0.195 5.195 24 H 0.307 0.693 25 N -0.173 5.173 26 C -0.019 4.019 27 H 0.062 0.938 28 H 0.210 0.790 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.289 0.711 40 H 0.066 0.934 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.851 -27.984 -2.621 30.503 hybrid contribution 0.116 0.934 -0.409 1.026 sum 11.967 -27.050 -3.031 29.734 Atomic orbital electron populations 1.69794 1.06317 1.26150 1.59206 1.25489 0.96412 1.00815 1.03462 0.85224 0.77790 0.79869 0.77418 1.21625 1.21519 1.19810 1.19520 0.91044 0.85492 1.41514 0.91695 1.42524 1.05521 1.00667 1.88319 1.20660 0.94637 0.86014 0.92948 0.95038 1.21740 0.98476 0.94630 1.00844 1.21950 1.00905 0.96640 0.96472 1.22205 0.97995 0.88512 0.93273 1.48329 1.18954 1.10403 1.56219 1.21247 0.80586 0.91512 0.77061 1.90692 1.62845 1.46446 1.47316 1.21501 0.96101 0.93019 1.04563 1.19513 0.95070 0.87738 1.02637 1.24104 0.95784 0.97019 0.88958 1.70440 1.18713 1.11290 1.30387 1.27077 0.95408 0.92662 0.86862 1.48090 1.36753 1.15099 1.19536 0.69271 1.77956 1.19177 0.96134 1.24080 1.22179 0.96612 0.83415 0.99676 0.93840 0.79042 0.92122 0.91575 0.91663 0.87198 0.89776 0.86579 0.86553 0.86448 0.89683 0.89903 0.71103 0.93386 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.82 13.06 21.65 0.28 -59.54 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 48.15 29.55 68.60 2.03 50.18 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.24 -14.20 9.93 84.03 0.83 -13.36 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 9 N -0.73 -37.88 5.13 -322.56 -1.65 -39.53 16 10 C 0.17 6.84 2.92 45.07 0.13 6.97 16 11 H 0.03 1.40 8.08 -2.38 -0.02 1.38 16 12 C -0.12 -3.60 5.35 30.62 0.16 -3.43 16 13 C -0.12 -2.48 6.10 30.82 0.19 -2.29 16 14 C 0.10 1.96 6.37 86.51 0.55 2.51 16 15 N -0.61 -18.15 2.97 -818.07 -2.43 -20.58 16 16 C 0.51 15.78 7.70 87.66 0.67 16.45 16 17 O -0.59 -24.48 15.39 -3.02 -0.05 -24.52 16 18 C -0.11 -2.33 4.03 29.85 0.12 -2.21 16 19 C -0.01 -0.22 5.13 29.85 0.15 -0.06 16 20 C 0.22 4.88 7.39 138.63 1.03 5.91 16 21 N -0.58 -11.18 11.19 -191.80 -2.15 -13.32 16 22 C 0.28 2.55 13.13 180.36 2.37 4.92 16 23 N -0.48 -4.81 7.45 -60.49 -0.45 -5.26 16 24 H 0.46 0.91 8.96 -213.10 -1.91 -1.00 16 25 N -0.34 -6.89 12.80 -51.33 -0.66 -7.55 16 26 C 0.11 4.24 6.01 86.36 0.52 4.75 16 27 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.38 20.49 7.80 -92.71 -0.72 19.77 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 1.45 5.93 -2.39 -0.01 1.44 16 35 H 0.12 1.93 7.93 -2.39 -0.02 1.91 16 36 H 0.12 2.03 7.70 -2.38 -0.02 2.02 16 37 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 38 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 39 H 0.27 -0.80 8.06 -2.91 -0.02 -0.83 16 40 H 0.05 2.30 7.00 -2.39 -0.02 2.28 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -83.73 341.07 0.55 -83.17 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -1.57 Total: 20.44 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 7.20 Total: 16.52 kcal Atomic # 7 Polarization: -138.74 SS G_CDS: -7.05 Total: -145.79 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -83.73 0.55 -83.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.953 kcal (2) G-P(sol) polarization free energy of solvation -83.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds