Wall clock time and date at job start Tue Mar 31 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.50335 * 324.94236 * 10 9 7 12 12 C 1.53048 * 109.49956 * 204.83910 * 10 9 7 13 13 C 1.53031 * 109.53889 * 178.68745 * 12 10 9 14 14 C 1.53198 * 109.31411 * 61.36755 * 13 12 10 15 15 N 1.46927 * 108.77277 * 305.36441 * 14 13 12 16 16 C 1.34779 * 120.62515 * 233.62878 * 15 14 13 17 17 O 1.21279 * 119.99715 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00404 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47314 * 180.02562 * 18 16 15 20 20 C 1.50707 * 109.47246 * 179.97438 * 19 18 16 21 21 N 1.33241 * 125.52441 * 269.69423 * 20 19 18 22 22 C 1.30835 * 109.82570 * 179.85734 * 21 20 19 23 23 N 1.34436 * 108.07692 * 0.40064 * 22 21 20 24 24 H 0.97000 * 126.82228 * 179.79339 * 23 22 21 25 25 N 1.30709 * 125.52552 * 89.99916 * 20 19 18 26 26 C 1.46917 * 118.74080 * 53.60706 * 15 14 13 27 27 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 29 29 H 1.09001 * 109.45860 * 298.70961 * 12 10 9 30 30 H 1.08997 * 109.45635 * 58.66428 * 12 10 9 31 31 H 1.09002 * 109.50192 * 301.41607 * 13 12 10 32 32 H 1.09006 * 109.52591 * 181.33097 * 13 12 10 33 33 H 1.09000 * 109.58753 * 185.57512 * 14 13 12 34 34 H 1.09006 * 109.58479 * 65.15068 * 14 13 12 35 35 H 1.09008 * 109.47199 * 299.99946 * 18 16 15 36 36 H 1.08999 * 109.47196 * 59.99811 * 18 16 15 37 37 H 1.08995 * 109.47167 * 300.00138 * 19 18 16 38 38 H 1.08999 * 109.47175 * 59.99759 * 19 18 16 39 39 H 1.07999 * 125.96048 * 180.19087 * 22 21 20 40 40 H 1.09001 * 109.58514 * 186.60036 * 26 15 14 41 41 H 1.09004 * 109.70511 * 66.24988 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9683 -3.5513 -0.5896 12 6 1.1797 -4.7538 -0.6055 13 6 1.9558 -6.0723 -0.6360 14 6 2.3192 -6.4796 0.7955 15 7 3.0397 -5.3699 1.4343 16 6 4.2442 -5.5712 2.0047 17 8 4.8292 -4.6469 2.5285 18 6 4.8640 -6.9447 1.9916 19 6 6.2194 -6.8994 2.6998 20 6 6.8390 -8.2731 2.6873 21 7 6.6769 -9.2042 3.6266 22 6 7.3491 -10.2798 3.3059 23 7 7.9726 -10.0491 2.1374 24 1 8.5466 -10.6634 1.6536 25 7 7.6271 -8.7424 1.7561 26 6 2.4226 -4.0366 1.4392 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0042 29 1 0.2812 -4.8752 -0.0005 30 1 0.8985 -4.4743 -1.6208 31 1 2.8671 -5.9448 -1.2203 32 1 1.3386 -6.8481 -1.0893 33 1 2.9559 -7.3641 0.7733 34 1 1.4096 -6.6955 1.3560 35 1 4.2075 -7.6446 2.5088 36 1 5.0030 -7.2708 0.9609 37 1 6.8761 -6.1995 2.1832 38 1 6.0801 -6.5734 3.7306 39 1 7.3976 -11.1924 3.8813 40 1 3.1275 -3.3092 1.8418 41 1 1.5218 -4.0508 2.0528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998856664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:37 Heat of formation + Delta-G solvation = 56.331307 kcal Electronic energy + Delta-G solvation = -23097.419252 eV Core-core repulsion = 19628.146929 eV Total energy + Delta-G solvation = -3469.272323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41344 -39.91358 -37.36089 -34.51919 -34.34341 -32.37530 -32.17357 -31.21132 -30.74566 -28.30490 -26.10325 -24.31104 -23.76847 -23.00742 -21.85282 -20.58391 -19.98935 -18.67176 -18.63508 -17.06209 -16.97843 -15.92432 -15.87670 -15.36070 -15.23119 -14.66692 -14.19656 -14.04501 -13.78369 -13.47420 -13.29631 -12.93743 -12.62390 -12.45747 -12.32216 -12.28707 -12.13598 -11.30824 -11.25619 -11.00468 -10.82710 -10.63618 -10.54808 -10.41979 -10.34665 -10.14249 -10.01622 -9.78384 -9.71325 -9.46146 -9.04029 -8.28762 -6.96669 -5.76076 -3.05658 1.27076 2.32387 2.55054 2.87834 3.27092 3.46970 3.53346 3.55967 3.82841 4.34978 4.58443 4.61042 4.78611 4.87097 5.01519 5.04921 5.13910 5.29147 5.39668 5.52014 5.59135 5.69537 5.78241 5.82261 5.84298 5.92386 5.96962 6.07692 6.16345 6.20120 6.24769 6.38549 6.53500 6.66481 6.78387 6.87120 7.05601 7.72223 7.75419 7.76060 8.41397 8.45825 9.54120 10.08341 10.43540 11.46312 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.003014 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.601511 B = 9287.323434 C = 9987.677662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.130 4.130 19 C -0.013 4.013 20 C 0.234 3.766 21 N -0.540 5.540 22 C 0.259 3.741 23 N -0.488 5.488 24 H 0.441 0.559 25 N -0.312 5.312 26 C 0.092 3.908 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.222 0.778 40 H 0.091 0.909 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 -25.501 3.125 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.016 4.016 15 N -0.340 5.340 16 C 0.300 3.700 17 O -0.419 6.419 18 C -0.172 4.172 19 C -0.053 4.053 20 C -0.048 4.048 21 N -0.268 5.268 22 C -0.040 4.040 23 N -0.206 5.206 24 H 0.286 0.714 25 N -0.141 5.141 26 C -0.033 4.033 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.239 0.761 40 H 0.109 0.891 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.159 -24.343 3.080 26.956 hybrid contribution 0.455 0.068 -0.178 0.494 sum 11.615 -24.276 2.901 27.067 Atomic orbital electron populations 1.69672 1.05121 1.25614 1.57689 1.24747 0.95521 0.97758 1.02761 0.86118 0.78998 0.84004 0.77138 1.20397 1.21885 1.21802 1.19326 0.91143 0.83964 1.42699 0.90971 1.42391 1.05799 0.99624 1.88122 1.20495 0.94858 0.86400 0.92532 0.93148 1.21820 0.98699 0.94126 1.01795 1.21887 1.00912 0.98210 0.95911 1.21738 0.96973 0.89048 0.93877 1.48270 1.18781 1.11049 1.55926 1.20417 0.81024 0.90267 0.78306 1.90714 1.61538 1.44399 1.45214 1.21582 0.96710 0.96072 1.02805 1.19698 0.94725 0.86867 1.04004 1.24380 0.94776 0.97550 0.88106 1.70469 1.25963 1.00630 1.29756 1.26142 0.91282 0.99390 0.87192 1.48168 1.40051 1.12929 1.19438 0.71364 1.78076 1.20422 0.92026 1.23614 1.22764 0.97849 0.81719 1.00922 0.93546 0.78099 0.92045 0.91456 0.91594 0.91076 0.90351 0.91386 0.88625 0.88838 0.88510 0.88069 0.76149 0.89100 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -18.02 5.12 -53.31 -0.27 -18.30 16 10 C 0.17 3.37 2.92 -67.81 -0.20 3.17 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.98 5.35 -26.69 -0.14 -2.13 16 13 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 14 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 15 N -0.61 -9.31 2.97 -172.77 -0.51 -9.83 16 16 C 0.51 8.02 7.70 -10.99 -0.08 7.93 16 17 O -0.54 -10.68 15.39 5.56 0.09 -10.59 16 18 C -0.13 -1.48 4.03 -27.89 -0.11 -1.59 16 19 C -0.01 -0.15 5.13 -27.88 -0.14 -0.29 16 20 C 0.23 2.71 7.39 -156.85 -1.16 1.55 16 21 N -0.54 -5.72 11.19 -11.97 -0.13 -5.85 16 22 C 0.26 1.63 13.13 -90.65 -1.19 0.44 16 23 N -0.49 -3.22 7.45 29.53 0.22 -3.00 16 24 H 0.44 1.19 8.96 -182.34 -1.63 -0.44 16 25 N -0.31 -3.45 12.80 32.42 0.41 -3.04 16 26 C 0.09 1.76 6.01 -3.71 -0.02 1.74 16 27 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.95 7.94 -51.92 -0.41 0.54 16 36 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 37 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.22 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -36.35 341.04 -10.05 -46.40 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.20 Total: 5.80 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -3.48 Total: 2.93 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: 0.44 Total: -67.56 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.35 -10.05 -46.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.729 kcal (2) G-P(sol) polarization free energy of solvation -36.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds