Wall clock time and date at job start Tue Mar 31 2020 03:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.50335 * 324.94236 * 10 9 7 12 12 C 1.53048 * 109.49956 * 204.83910 * 10 9 7 13 13 C 1.53031 * 109.53889 * 178.68745 * 12 10 9 14 14 C 1.53198 * 109.31411 * 61.36755 * 13 12 10 15 15 N 1.46927 * 108.77277 * 305.36441 * 14 13 12 16 16 C 1.34779 * 120.62515 * 233.62878 * 15 14 13 17 17 O 1.21279 * 119.99715 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00404 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47314 * 180.02562 * 18 16 15 20 20 C 1.50707 * 109.47246 * 179.97438 * 19 18 16 21 21 N 1.33241 * 125.52441 * 269.69423 * 20 19 18 22 22 C 1.30835 * 109.82570 * 179.85734 * 21 20 19 23 23 N 1.34436 * 108.07692 * 0.40064 * 22 21 20 24 24 H 0.97000 * 126.82228 * 179.79339 * 23 22 21 25 25 N 1.30709 * 125.52552 * 89.99916 * 20 19 18 26 26 C 1.46917 * 118.74080 * 53.60706 * 15 14 13 27 27 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 29 29 H 1.09001 * 109.45860 * 298.70961 * 12 10 9 30 30 H 1.08997 * 109.45635 * 58.66428 * 12 10 9 31 31 H 1.09002 * 109.50192 * 301.41607 * 13 12 10 32 32 H 1.09006 * 109.52591 * 181.33097 * 13 12 10 33 33 H 1.09000 * 109.58753 * 185.57512 * 14 13 12 34 34 H 1.09006 * 109.58479 * 65.15068 * 14 13 12 35 35 H 1.09008 * 109.47199 * 299.99946 * 18 16 15 36 36 H 1.08999 * 109.47196 * 59.99811 * 18 16 15 37 37 H 1.08995 * 109.47167 * 300.00138 * 19 18 16 38 38 H 1.08999 * 109.47175 * 59.99759 * 19 18 16 39 39 H 1.07999 * 125.96048 * 180.19087 * 22 21 20 40 40 H 1.09001 * 109.58514 * 186.60036 * 26 15 14 41 41 H 1.09004 * 109.70511 * 66.24988 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9683 -3.5513 -0.5896 12 6 1.1797 -4.7538 -0.6055 13 6 1.9558 -6.0723 -0.6360 14 6 2.3192 -6.4796 0.7955 15 7 3.0397 -5.3699 1.4343 16 6 4.2442 -5.5712 2.0047 17 8 4.8292 -4.6469 2.5285 18 6 4.8640 -6.9447 1.9916 19 6 6.2194 -6.8994 2.6998 20 6 6.8390 -8.2731 2.6873 21 7 6.6769 -9.2042 3.6266 22 6 7.3491 -10.2798 3.3059 23 7 7.9726 -10.0491 2.1374 24 1 8.5466 -10.6634 1.6536 25 7 7.6271 -8.7424 1.7561 26 6 2.4226 -4.0366 1.4392 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0042 29 1 0.2812 -4.8752 -0.0005 30 1 0.8985 -4.4743 -1.6208 31 1 2.8671 -5.9448 -1.2203 32 1 1.3386 -6.8481 -1.0893 33 1 2.9559 -7.3641 0.7733 34 1 1.4096 -6.6955 1.3560 35 1 4.2075 -7.6446 2.5088 36 1 5.0030 -7.2708 0.9609 37 1 6.8761 -6.1995 2.1832 38 1 6.0801 -6.5734 3.7306 39 1 7.3976 -11.1924 3.8813 40 1 3.1275 -3.3092 1.8418 41 1 1.5218 -4.0508 2.0528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998856664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:36 Heat of formation + Delta-G solvation = 30.565209 kcal Electronic energy + Delta-G solvation = -23098.536554 eV Core-core repulsion = 19628.146929 eV Total energy + Delta-G solvation = -3470.389625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.05214 -41.19349 -38.75754 -36.20351 -35.29908 -33.90336 -32.96163 -32.70971 -31.65039 -29.97345 -27.26638 -25.87844 -25.23859 -23.59866 -23.22855 -21.72754 -21.08222 -19.89555 -19.23515 -19.11328 -18.16004 -16.99990 -16.90742 -16.62723 -16.22384 -16.02832 -15.57010 -15.43909 -15.23968 -14.95174 -14.55544 -14.07197 -13.91436 -13.65984 -13.59888 -13.31843 -13.07763 -12.99275 -12.90992 -12.49357 -12.18611 -12.16559 -11.99623 -11.87686 -11.66117 -11.33047 -11.11916 -11.07725 -11.03302 -10.84156 -10.61780 -9.71233 -9.00653 -7.99112 -5.28111 0.67195 1.43672 1.45172 1.55267 1.64624 1.78805 1.88274 2.12057 2.53444 3.15989 3.34214 3.60512 3.74348 3.76658 3.98349 4.04513 4.09373 4.17467 4.25635 4.33811 4.37511 4.41584 4.52349 4.66537 4.78678 4.88763 4.91804 4.94652 4.98542 5.07869 5.16039 5.27478 5.37614 5.40581 5.44551 5.48470 5.61012 6.24093 6.30154 6.50320 7.13593 7.20667 7.30491 8.03073 8.28157 9.23812 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.003014 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.601511 B = 9287.323434 C = 9987.677662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.606 5.606 16 C 0.506 3.494 17 O -0.592 6.592 18 C -0.111 4.111 19 C -0.009 4.009 20 C 0.224 3.776 21 N -0.578 5.578 22 C 0.278 3.722 23 N -0.476 5.476 24 H 0.458 0.542 25 N -0.344 5.344 26 C 0.107 3.893 27 H 0.253 0.747 28 H 0.377 0.623 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.274 0.726 40 H 0.047 0.953 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 -29.114 2.870 31.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.083 0.917 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.049 0.951 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.020 4.020 15 N -0.339 5.339 16 C 0.296 3.704 17 O -0.473 6.473 18 C -0.152 4.152 19 C -0.050 4.050 20 C -0.059 4.059 21 N -0.307 5.307 22 C -0.020 4.020 23 N -0.195 5.195 24 H 0.307 0.693 25 N -0.175 5.175 26 C -0.019 4.019 27 H 0.062 0.938 28 H 0.210 0.790 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.290 0.710 40 H 0.066 0.934 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.779 -28.047 2.796 30.548 hybrid contribution 0.351 1.053 -0.077 1.113 sum 12.130 -26.994 2.719 29.719 Atomic orbital electron populations 1.69797 1.06307 1.26088 1.59248 1.25485 0.96413 1.00804 1.03473 0.85158 0.78035 0.80156 0.76951 1.19806 1.21420 1.21830 1.19549 0.91020 0.85485 1.41417 0.91731 1.42532 1.05529 1.00665 1.88302 1.20663 0.94605 0.86032 0.92985 0.95110 1.21737 0.98494 0.94593 1.00847 1.21880 1.00863 0.96710 0.96575 1.22115 0.98106 0.88523 0.93227 1.48320 1.18992 1.10449 1.56116 1.21245 0.80572 0.91505 0.77076 1.90693 1.62826 1.46433 1.47351 1.21499 0.96322 0.93110 1.04249 1.19513 0.94914 0.87527 1.03004 1.24105 0.95461 0.97424 0.88878 1.70435 1.28075 1.01811 1.30405 1.27090 0.88764 0.99602 0.86544 1.48096 1.39936 1.11758 1.19727 0.69287 1.77969 1.20881 0.94216 1.24389 1.22178 0.96657 0.83415 0.99661 0.93830 0.79027 0.91502 0.92155 0.91809 0.87147 0.86602 0.89683 0.86201 0.86782 0.90159 0.89440 0.71048 0.93397 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.77 13.06 21.65 0.28 -59.49 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 48.18 29.55 68.60 2.03 50.21 16 4 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 7 C -0.24 -14.14 9.93 84.03 0.83 -13.31 16 8 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.73 -37.87 5.12 -322.57 -1.65 -39.52 16 10 C 0.17 6.83 2.92 45.07 0.13 6.96 16 11 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 12 C -0.12 -3.59 5.35 30.62 0.16 -3.43 16 13 C -0.12 -2.49 6.08 30.67 0.19 -2.31 16 14 C 0.10 1.96 6.34 86.36 0.55 2.50 16 15 N -0.61 -18.14 2.97 -818.90 -2.43 -20.57 16 16 C 0.51 15.78 7.70 87.65 0.67 16.45 16 17 O -0.59 -24.49 15.39 -3.03 -0.05 -24.54 16 18 C -0.11 -2.33 4.03 29.84 0.12 -2.21 16 19 C -0.01 -0.22 5.13 29.85 0.15 -0.06 16 20 C 0.22 4.88 7.39 138.63 1.03 5.91 16 21 N -0.58 -10.96 11.19 -191.79 -2.15 -13.10 16 22 C 0.28 2.50 13.13 180.36 2.37 4.87 16 23 N -0.48 -4.89 7.45 -60.49 -0.45 -5.34 16 24 H 0.46 1.03 8.96 -213.10 -1.91 -0.88 16 25 N -0.34 -7.04 12.80 -51.33 -0.66 -7.70 16 26 C 0.11 4.22 6.01 86.37 0.52 4.74 16 27 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 28 H 0.38 20.49 7.80 -92.71 -0.72 19.76 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.12 1.45 5.93 -2.39 -0.01 1.44 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.12 1.99 7.94 -2.38 -0.02 1.97 16 36 H 0.11 1.97 7.69 -2.39 -0.02 1.95 16 37 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 38 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 39 H 0.27 -0.89 8.06 -2.91 -0.02 -0.91 16 40 H 0.05 2.29 7.00 -2.39 -0.02 2.27 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -83.81 341.04 0.54 -83.27 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -1.57 Total: 20.28 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.19 Total: 16.50 kcal Atomic # 7 Polarization: -138.66 SS G_CDS: -7.06 Total: -145.72 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.05 Total: -24.54 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -83.81 0.54 -83.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.836 kcal (2) G-P(sol) polarization free energy of solvation -83.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds