Wall clock time and date at job start Tue Mar 31 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99656 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99952 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50248 * 35.07435 * 10 9 7 12 12 C 1.53048 * 109.49544 * 155.16586 * 10 9 7 13 13 C 1.53042 * 109.53938 * 181.32135 * 12 10 9 14 14 C 1.53192 * 109.31105 * 298.63236 * 13 12 10 15 15 N 1.46932 * 108.77432 * 54.63460 * 14 13 12 16 16 C 1.34770 * 120.62583 * 126.37122 * 15 14 13 17 17 O 1.21288 * 119.99767 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00326 * 0.02562 * 16 15 14 19 19 C 1.53009 * 109.47177 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.46969 * 180.02562 * 19 18 16 21 21 C 1.35311 * 125.87002 * 124.99865 * 20 19 18 22 22 C 1.35348 * 106.17467 * 179.97438 * 21 20 19 23 23 N 1.33778 * 106.49849 * 359.97438 * 22 21 20 24 24 N 1.28636 * 108.88138 * 359.73837 * 23 22 21 25 25 C 1.46928 * 118.74093 * 306.39097 * 15 14 13 26 26 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 28 28 H 1.09011 * 109.45730 * 301.33994 * 12 10 9 29 29 H 1.08993 * 109.46223 * 61.29668 * 12 10 9 30 30 H 1.09004 * 109.49475 * 178.68137 * 13 12 10 31 31 H 1.08998 * 109.52309 * 58.59701 * 13 12 10 32 32 H 1.09000 * 109.58332 * 294.85141 * 14 13 12 33 33 H 1.08992 * 109.58688 * 174.42414 * 14 13 12 34 34 H 1.08997 * 109.47324 * 299.99618 * 18 16 15 35 35 H 1.08995 * 109.47156 * 60.00381 * 18 16 15 36 36 H 1.09006 * 109.46544 * 299.99720 * 19 18 16 37 37 H 1.08995 * 109.46981 * 60.00012 * 19 18 16 38 38 H 1.07993 * 126.91045 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.75302 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.58513 * 293.82388 * 25 15 14 41 41 H 1.08997 * 109.70332 * 173.46355 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9682 -3.5514 0.5910 12 6 1.1796 -4.7538 0.6065 13 6 1.9557 -6.0724 0.6372 14 6 2.3194 -6.4797 -0.7941 15 7 3.0400 -5.3700 -1.4329 16 6 4.2445 -5.5713 -2.0031 17 8 4.8296 -4.6470 -2.5268 18 6 4.8643 -6.9449 -1.9898 19 6 6.2205 -6.8993 -2.6968 20 7 6.8228 -8.2347 -2.6844 21 6 7.2476 -8.9230 -3.7692 22 6 7.7309 -10.0986 -3.3043 23 7 7.5806 -10.0722 -1.9752 24 7 7.0452 -8.9520 -1.6390 25 6 2.4228 -4.0366 -1.4380 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0042 28 1 0.8982 -4.4742 1.6219 29 1 0.2812 -4.8752 0.0014 30 1 1.3379 -6.8477 1.0903 31 1 2.8668 -5.9452 1.2218 32 1 1.4099 -6.6956 -1.3548 33 1 2.9560 -7.3641 -0.7718 34 1 5.0032 -7.2709 -0.9590 35 1 4.2080 -7.6447 -2.5070 36 1 6.0820 -6.5730 -3.7276 37 1 6.8767 -6.1995 -2.1792 38 1 7.2095 -8.5990 -4.7986 39 1 8.1545 -10.9004 -3.8909 40 1 1.5218 -4.0534 -2.0511 41 1 3.1258 -3.3078 -1.8413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999008251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:48 Heat of formation + Delta-G solvation = 76.040186 kcal Electronic energy + Delta-G solvation = -23226.944140 eV Core-core repulsion = 19758.526458 eV Total energy + Delta-G solvation = -3468.417682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.48649 -40.17009 -37.58109 -35.47734 -34.57149 -32.45253 -31.54886 -31.28009 -30.99580 -28.37423 -26.21057 -24.53225 -23.91520 -22.92582 -21.96609 -21.69209 -20.23937 -18.87476 -18.13363 -17.13822 -16.78609 -16.65264 -15.96686 -15.56155 -15.21265 -14.81623 -14.42472 -14.33342 -14.14519 -13.66847 -13.53826 -13.29184 -12.92991 -12.74556 -12.47939 -12.34838 -12.07512 -11.72044 -11.41841 -11.16404 -11.08876 -10.86951 -10.73275 -10.64883 -10.41235 -10.27726 -9.90457 -9.89122 -9.68271 -9.64083 -9.12780 -8.46868 -7.05252 -5.82781 -3.13022 1.33202 1.99836 2.33287 2.57786 3.08357 3.42918 3.46970 3.48479 4.05514 4.23261 4.30955 4.44549 4.54457 4.74290 4.79940 4.90531 4.94431 4.99922 5.12083 5.17954 5.30019 5.42489 5.47484 5.50544 5.56372 5.73839 5.83575 5.88624 5.95949 6.09749 6.14696 6.27154 6.27968 6.40852 6.61223 6.75613 6.92490 7.48830 7.66854 8.15533 8.25457 8.35318 9.47070 10.00548 10.35699 11.39289 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.003069 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.407375 B = 9120.140626 C = 9863.227061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.105 3.895 15 N -0.601 5.601 16 C 0.516 3.484 17 O -0.544 6.544 18 C -0.154 4.154 19 C 0.130 3.870 20 N -0.289 5.289 21 C -0.048 4.048 22 C -0.056 4.056 23 N -0.274 5.274 24 N -0.085 5.085 25 C 0.092 3.908 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.191 0.809 39 H 0.189 0.811 40 H 0.062 0.938 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -19.893 -6.752 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.019 4.019 15 N -0.334 5.334 16 C 0.303 3.697 17 O -0.422 6.422 18 C -0.194 4.194 19 C 0.009 3.991 20 N -0.083 5.083 21 C -0.199 4.199 22 C -0.213 4.213 23 N -0.140 5.140 24 N -0.065 5.065 25 C -0.033 4.033 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.208 0.792 39 H 0.206 0.794 40 H 0.081 0.919 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.748 -19.270 -5.471 21.858 hybrid contribution 0.072 1.055 -1.327 1.697 sum 8.820 -18.215 -6.798 21.349 Atomic orbital electron populations 1.69649 1.05136 1.25950 1.57243 1.24751 0.95519 0.97785 1.02533 0.86261 0.78568 0.83337 0.78009 1.21095 1.21645 1.21167 1.19219 0.91059 0.83968 1.43355 0.91095 1.42367 1.05809 0.99559 1.88105 1.20486 0.94954 0.86502 0.92337 0.93121 1.21835 0.98683 0.94052 1.01947 1.21884 1.01079 0.98308 0.95655 1.21797 0.97033 0.88850 0.94174 1.48275 1.18432 1.11398 1.55299 1.20093 0.81372 0.89532 0.78745 1.90742 1.61588 1.44234 1.45638 1.21909 0.95845 0.97244 1.04449 1.21908 0.94510 0.77620 1.05062 1.47612 1.39611 1.15813 1.05251 1.23754 1.05953 0.94909 0.95299 1.23640 1.06394 0.99072 0.92189 1.75136 1.14261 1.11656 1.12969 1.78313 1.16696 0.99417 1.12051 1.22844 0.97846 0.81303 1.01277 0.93363 0.78039 0.91302 0.92002 0.90848 0.91446 0.91178 0.90253 0.87079 0.88228 0.86586 0.87082 0.79222 0.79397 0.91932 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.72 9.93 -15.06 -0.15 -6.87 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -17.42 5.13 -53.31 -0.27 -17.69 16 10 C 0.17 3.21 2.92 -67.81 -0.20 3.01 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -1.90 5.35 -26.68 -0.14 -2.04 16 13 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 14 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 15 N -0.60 -8.28 2.97 -172.77 -0.51 -8.79 16 16 C 0.52 6.93 7.70 -10.99 -0.08 6.84 16 17 O -0.54 -9.35 15.40 5.55 0.09 -9.26 16 18 C -0.15 -1.40 4.18 -27.88 -0.12 -1.52 16 19 C 0.13 1.12 5.74 -4.04 -0.02 1.09 16 20 N -0.29 -2.74 3.44 -61.26 -0.21 -2.95 16 21 C -0.05 -0.35 11.57 -17.05 -0.20 -0.55 16 22 C -0.06 -0.47 12.05 -17.73 -0.21 -0.69 16 23 N -0.27 -3.38 12.41 30.24 0.38 -3.00 16 24 N -0.08 -1.04 12.92 60.35 0.78 -0.26 16 25 C 0.09 1.63 6.01 -3.71 -0.02 1.61 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 27 H 0.39 9.86 7.80 -40.82 -0.32 9.54 16 28 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 34 H 0.11 0.99 7.67 -51.93 -0.40 0.60 16 35 H 0.10 0.75 7.94 -51.93 -0.41 0.33 16 36 H 0.12 0.82 8.02 -51.93 -0.42 0.40 16 37 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.19 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.93 7.01 -51.93 -0.36 1.56 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -33.99 341.25 -6.33 -40.32 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.99 Total: 6.12 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.43 Total: -0.04 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.88 Total: -59.64 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.99 -6.33 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999008251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.361 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds