Wall clock time and date at job start Tue Mar 31 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99656 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99952 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50248 * 35.07435 * 10 9 7 12 12 C 1.53048 * 109.49544 * 155.16586 * 10 9 7 13 13 C 1.53042 * 109.53938 * 181.32135 * 12 10 9 14 14 C 1.53192 * 109.31105 * 298.63236 * 13 12 10 15 15 N 1.46932 * 108.77432 * 54.63460 * 14 13 12 16 16 C 1.34770 * 120.62583 * 126.37122 * 15 14 13 17 17 O 1.21288 * 119.99767 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00326 * 0.02562 * 16 15 14 19 19 C 1.53009 * 109.47177 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.46969 * 180.02562 * 19 18 16 21 21 C 1.35311 * 125.87002 * 124.99865 * 20 19 18 22 22 C 1.35348 * 106.17467 * 179.97438 * 21 20 19 23 23 N 1.33778 * 106.49849 * 359.97438 * 22 21 20 24 24 N 1.28636 * 108.88138 * 359.73837 * 23 22 21 25 25 C 1.46928 * 118.74093 * 306.39097 * 15 14 13 26 26 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 28 28 H 1.09011 * 109.45730 * 301.33994 * 12 10 9 29 29 H 1.08993 * 109.46223 * 61.29668 * 12 10 9 30 30 H 1.09004 * 109.49475 * 178.68137 * 13 12 10 31 31 H 1.08998 * 109.52309 * 58.59701 * 13 12 10 32 32 H 1.09000 * 109.58332 * 294.85141 * 14 13 12 33 33 H 1.08992 * 109.58688 * 174.42414 * 14 13 12 34 34 H 1.08997 * 109.47324 * 299.99618 * 18 16 15 35 35 H 1.08995 * 109.47156 * 60.00381 * 18 16 15 36 36 H 1.09006 * 109.46544 * 299.99720 * 19 18 16 37 37 H 1.08995 * 109.46981 * 60.00012 * 19 18 16 38 38 H 1.07993 * 126.91045 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.75302 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.58513 * 293.82388 * 25 15 14 41 41 H 1.08997 * 109.70332 * 173.46355 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9682 -3.5514 0.5910 12 6 1.1796 -4.7538 0.6065 13 6 1.9557 -6.0724 0.6372 14 6 2.3194 -6.4797 -0.7941 15 7 3.0400 -5.3700 -1.4329 16 6 4.2445 -5.5713 -2.0031 17 8 4.8296 -4.6470 -2.5268 18 6 4.8643 -6.9449 -1.9898 19 6 6.2205 -6.8993 -2.6968 20 7 6.8228 -8.2347 -2.6844 21 6 7.2476 -8.9230 -3.7692 22 6 7.7309 -10.0986 -3.3043 23 7 7.5806 -10.0722 -1.9752 24 7 7.0452 -8.9520 -1.6390 25 6 2.4228 -4.0366 -1.4380 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0042 28 1 0.8982 -4.4742 1.6219 29 1 0.2812 -4.8752 0.0014 30 1 1.3379 -6.8477 1.0903 31 1 2.8668 -5.9452 1.2218 32 1 1.4099 -6.6956 -1.3548 33 1 2.9560 -7.3641 -0.7718 34 1 5.0032 -7.2709 -0.9590 35 1 4.2080 -7.6447 -2.5070 36 1 6.0820 -6.5730 -3.7276 37 1 6.8767 -6.1995 -2.1792 38 1 7.2095 -8.5990 -4.7986 39 1 8.1545 -10.9004 -3.8909 40 1 1.5218 -4.0534 -2.0511 41 1 3.1258 -3.3078 -1.8413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999008251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:47 Heat of formation + Delta-G solvation = 51.620166 kcal Electronic energy + Delta-G solvation = -23228.003071 eV Core-core repulsion = 19758.526458 eV Total energy + Delta-G solvation = -3469.476613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.16640 -41.30006 -38.84380 -36.26007 -36.22297 -33.98381 -32.77410 -32.19792 -31.88142 -29.95918 -27.22306 -25.90385 -25.39689 -23.57173 -23.27387 -22.47385 -21.54874 -19.98244 -19.13849 -18.92525 -17.62957 -17.56100 -16.99315 -16.61146 -16.57677 -15.82035 -15.60126 -15.48825 -15.36061 -15.10770 -14.82481 -14.36493 -14.06369 -13.81464 -13.68600 -13.60436 -13.06216 -12.89036 -12.81559 -12.51050 -12.43456 -12.26713 -12.02547 -11.91313 -11.84400 -11.69406 -11.35992 -11.16208 -11.11404 -10.88893 -10.30250 -9.77687 -9.03120 -7.99779 -5.29121 0.68272 1.31125 1.43995 1.46191 1.52076 1.52770 1.66805 2.03962 2.52640 3.33249 3.37711 3.45848 3.62179 3.74600 3.79405 4.00174 4.04277 4.15216 4.25486 4.28364 4.32932 4.36201 4.38635 4.47080 4.59910 4.62864 4.73772 4.86492 4.88266 4.90879 5.02501 5.13643 5.31661 5.37279 5.42148 5.44175 5.54945 5.64862 6.22748 6.40509 7.07402 7.29468 7.55359 8.02049 8.26674 9.22651 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.003069 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.407375 B = 9120.140626 C = 9863.227061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.066 0.934 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.119 4.119 13 C -0.123 4.123 14 C 0.101 3.899 15 N -0.603 5.603 16 C 0.514 3.486 17 O -0.587 6.587 18 C -0.137 4.137 19 C 0.132 3.868 20 N -0.289 5.289 21 C -0.034 4.034 22 C -0.064 4.064 23 N -0.311 5.311 24 N -0.124 5.124 25 C 0.108 3.892 26 H 0.253 0.747 27 H 0.377 0.623 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.231 0.769 39 H 0.218 0.782 40 H 0.059 0.941 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -22.268 -7.743 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.370 5.370 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.158 4.158 13 C -0.162 4.162 14 C -0.020 4.020 15 N -0.335 5.335 16 C 0.303 3.697 17 O -0.469 6.469 18 C -0.177 4.177 19 C 0.011 3.989 20 N -0.083 5.083 21 C -0.185 4.185 22 C -0.222 4.222 23 N -0.177 5.177 24 N -0.103 5.103 25 C -0.018 4.018 26 H 0.062 0.938 27 H 0.210 0.790 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.116 0.884 38 H 0.248 0.752 39 H 0.235 0.765 40 H 0.078 0.922 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.346 -21.715 -6.434 24.501 hybrid contribution -0.047 1.712 -1.071 2.020 sum 9.300 -20.003 -7.505 23.301 Atomic orbital electron populations 1.69782 1.06341 1.26263 1.59013 1.25487 0.96381 1.00825 1.03373 0.85305 0.77373 0.79579 0.78086 1.20779 1.21653 1.20480 1.19481 0.91052 0.85449 1.41792 0.91603 1.42513 1.05525 1.00641 1.88357 1.20661 0.94584 0.85982 0.93123 0.95119 1.21747 0.98546 0.94591 1.00871 1.21878 1.00883 0.96754 0.96652 1.22117 0.98198 0.88424 0.93261 1.48290 1.18912 1.10563 1.55754 1.20824 0.80680 0.90799 0.77447 1.90726 1.62582 1.46119 1.47424 1.21802 0.96237 0.94299 1.05388 1.21899 0.93859 0.77208 1.05943 1.47672 1.39402 1.15740 1.05502 1.24449 1.03742 0.93928 0.96370 1.24255 1.06246 1.00469 0.91203 1.75082 1.15244 1.12178 1.15171 1.78275 1.18635 1.00096 1.13317 1.22195 0.96825 0.83137 0.99598 0.93817 0.79043 0.92307 0.91444 0.87354 0.91844 0.89465 0.86728 0.86426 0.85513 0.84763 0.88363 0.75212 0.76520 0.92247 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.56 13.06 21.65 0.28 -58.28 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.25 -13.89 9.93 84.03 0.83 -13.05 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.73 -36.57 5.13 -322.56 -1.65 -38.23 16 10 C 0.17 6.46 2.92 45.07 0.13 6.59 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -3.45 5.35 30.62 0.16 -3.29 16 13 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 14 C 0.10 1.73 6.34 86.36 0.55 2.28 16 15 N -0.60 -15.80 2.97 -818.91 -2.43 -18.23 16 16 C 0.51 13.15 7.70 87.66 0.67 13.83 16 17 O -0.59 -20.32 15.40 -3.05 -0.05 -20.36 16 18 C -0.14 -2.12 4.18 29.85 0.12 -1.99 16 19 C 0.13 1.98 5.74 86.38 0.50 2.48 16 20 N -0.29 -4.79 3.44 -347.72 -1.20 -5.98 16 21 C -0.03 -0.38 11.57 83.49 0.97 0.59 16 22 C -0.06 -0.93 12.05 83.73 1.01 0.08 16 23 N -0.31 -7.25 12.41 -58.25 -0.72 -7.97 16 24 N -0.12 -2.87 12.92 37.02 0.48 -2.39 16 25 C 0.11 3.92 6.01 86.36 0.52 4.44 16 26 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 27 H 0.38 19.90 7.80 -92.71 -0.72 19.18 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.23 5.93 -2.39 -0.01 1.22 16 34 H 0.12 1.76 7.67 -2.39 -0.02 1.74 16 35 H 0.13 1.34 7.94 -2.39 -0.02 1.32 16 36 H 0.13 1.53 8.02 -2.38 -0.02 1.51 16 37 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.23 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.22 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.31 7.01 -2.39 -0.02 2.29 16 Total: -1.00 -77.90 341.25 3.17 -74.72 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.32 Total: 21.54 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.12 Total: 6.29 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -5.24 Total: -131.08 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.90 3.17 -74.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999008251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.344 kcal (2) G-P(sol) polarization free energy of solvation -77.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds