Wall clock time and date at job start Tue Mar 31 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00471 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00019 * 3 2 1 5 5 H 1.48507 * 109.46947 * 29.99898 * 3 2 1 6 6 H 1.48498 * 109.47305 * 149.99544 * 3 2 1 7 7 C 1.38814 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52625 * 325.08065 * 10 9 7 12 12 C 1.53046 * 109.49651 * 204.99988 * 10 9 7 13 13 C 1.53039 * 109.52798 * 178.67721 * 12 10 9 14 14 C 1.53195 * 109.31257 * 61.36716 * 13 12 10 15 15 N 1.46919 * 108.77845 * 305.36660 * 14 13 12 16 16 C 1.34771 * 120.63242 * 233.58225 * 15 14 13 17 17 O 1.21287 * 119.99858 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00285 * 0.02562 * 16 15 14 19 19 C 1.52996 * 109.47586 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47338 * 179.97438 * 19 18 16 21 21 C 1.35343 * 126.91568 * 274.68288 * 20 19 18 22 22 N 1.33774 * 106.50085 * 179.90513 * 21 20 19 23 23 N 1.28630 * 108.88336 * 0.36420 * 22 21 20 24 24 N 1.28713 * 110.17994 * 359.76832 * 23 22 21 25 25 H 0.97001 * 125.87044 * 180.02562 * 24 23 22 26 26 C 1.46931 * 118.73612 * 53.60997 * 15 14 13 27 27 H 0.97000 * 119.99768 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99598 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46115 * 58.66174 * 12 10 9 30 30 H 1.09004 * 109.45806 * 298.69059 * 12 10 9 31 31 H 1.08997 * 109.50134 * 181.32407 * 13 12 10 32 32 H 1.09000 * 109.49863 * 301.42271 * 13 12 10 33 33 H 1.08997 * 109.58182 * 65.15696 * 14 13 12 34 34 H 1.09002 * 109.58573 * 185.43694 * 14 13 12 35 35 H 1.09001 * 109.46653 * 299.99587 * 18 16 15 36 36 H 1.09000 * 109.47212 * 59.99022 * 18 16 15 37 37 H 1.09001 * 109.46802 * 299.99514 * 19 18 16 38 38 H 1.09000 * 109.47629 * 59.99296 * 19 18 16 39 39 H 1.08000 * 126.74765 * 0.03636 * 21 20 19 40 40 H 1.08998 * 109.58959 * 66.17523 * 26 15 14 41 41 H 1.09003 * 109.58181 * 186.46006 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9696 -3.5512 -0.5875 12 6 1.1809 -4.7529 -0.6092 13 6 1.9573 -6.0714 -0.6398 14 6 2.3174 -6.4806 0.7919 15 7 3.0362 -5.3719 1.4342 16 6 4.2389 -5.5740 2.0079 17 8 4.8224 -4.6503 2.5345 18 6 4.8591 -6.9473 1.9942 19 6 6.2128 -6.9028 2.7057 20 6 6.8327 -8.2762 2.6925 21 6 6.6125 -9.2760 3.5777 22 7 7.3658 -10.3078 3.1808 23 7 8.0156 -9.9667 2.1244 24 7 7.7260 -8.7562 1.7964 25 1 8.0859 -8.2714 1.0373 26 6 2.4187 -4.0386 1.4396 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0002 29 1 0.9022 -4.4720 -1.6248 30 1 0.2811 -4.8753 -0.0063 31 1 1.3409 -6.8462 -1.0955 32 1 2.8700 -5.9428 -1.2217 33 1 1.4066 -6.6976 1.3499 34 1 2.9522 -7.3665 0.7700 35 1 4.2011 -7.6482 2.5080 36 1 5.0013 -7.2715 0.9633 37 1 6.8706 -6.2020 2.1915 38 1 6.0711 -6.5784 3.7366 39 1 5.9560 -9.2473 4.4348 40 1 1.5161 -4.0564 2.0504 41 1 3.1217 -3.3121 1.8473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000230574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:50 Heat of formation + Delta-G solvation = 61.112258 kcal Electronic energy + Delta-G solvation = -23163.771384 eV Core-core repulsion = 19694.706379 eV Total energy + Delta-G solvation = -3469.065005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.61734 -40.09191 -37.51810 -34.77000 -34.51232 -33.46379 -32.38002 -31.28164 -30.31231 -28.32315 -26.03953 -24.39566 -23.85219 -23.25836 -21.96609 -21.94406 -20.22199 -18.81130 -18.58870 -17.14489 -17.10500 -16.42832 -15.90408 -15.62731 -14.89154 -14.65815 -14.45105 -14.27972 -14.06516 -13.64259 -13.47556 -13.27381 -12.79031 -12.61309 -12.47270 -12.29253 -12.02914 -11.64028 -11.41299 -11.14628 -11.09004 -10.90265 -10.89142 -10.73032 -10.64866 -10.25232 -9.89682 -9.86693 -9.67495 -9.43454 -9.12278 -8.42641 -7.05247 -5.83365 -3.13471 1.20616 2.22934 2.40135 2.68423 3.10961 3.41197 3.46997 3.48898 4.05289 4.31642 4.52849 4.54138 4.60669 4.71984 4.83773 4.90754 5.00522 5.10445 5.16079 5.17666 5.42829 5.48209 5.56171 5.60738 5.63572 5.72584 5.81788 5.85241 5.95702 6.09166 6.14422 6.27488 6.42170 6.48495 6.64530 6.76119 6.93569 7.56586 7.66597 8.12084 8.26569 8.34991 9.46578 10.00268 10.35293 11.38845 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.003027 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.934425 B = 9249.386301 C = 9946.937560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.509 3.491 17 O -0.542 6.542 18 C -0.136 4.136 19 C -0.035 4.035 20 C -0.003 4.003 21 C -0.047 4.047 22 N -0.267 5.267 23 N -0.085 5.085 24 N -0.390 5.390 25 H 0.448 0.552 26 C 0.091 3.909 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.192 0.808 40 H 0.061 0.939 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 -18.673 2.147 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.338 5.338 16 C 0.296 3.704 17 O -0.420 6.420 18 C -0.176 4.176 19 C -0.075 4.075 20 C -0.137 4.137 21 C -0.205 4.205 22 N -0.134 5.134 23 N -0.065 5.065 24 N -0.111 5.111 25 H 0.294 0.706 26 C -0.033 4.033 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.209 0.791 40 H 0.079 0.921 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.575 -19.357 2.180 21.706 hybrid contribution -0.414 2.171 -0.266 2.226 sum 9.161 -17.187 1.914 19.570 Atomic orbital electron populations 1.69658 1.05137 1.25828 1.57340 1.24752 0.95521 0.97785 1.02582 0.86191 0.78822 0.83678 0.77544 1.21666 1.21691 1.20583 1.19256 0.91066 0.83967 1.43191 0.91075 1.42376 1.05816 0.99584 1.88123 1.20477 0.94856 0.86466 0.92413 0.93241 1.21834 0.98735 0.94076 1.01881 1.21884 1.00916 0.98307 0.95800 1.21748 0.97086 0.88947 0.93946 1.48301 1.18875 1.11194 1.55478 1.20435 0.81156 0.90253 0.78526 1.90729 1.61599 1.44417 1.45247 1.21687 0.96900 0.96260 1.02787 1.19912 0.94800 0.88386 1.04353 1.22387 0.97788 0.99786 0.93778 1.23463 1.04263 0.89837 1.02888 1.75109 1.07506 1.25301 1.05474 1.78298 1.20731 0.95715 1.11764 1.45172 1.30776 1.11716 1.23391 0.70635 1.22808 0.97854 0.81561 1.01071 0.93417 0.78053 0.91391 0.91982 0.90972 0.91672 0.91274 0.90334 0.88331 0.89052 0.89355 0.87668 0.79146 0.92051 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -17.32 5.12 -53.31 -0.27 -17.60 16 10 C 0.17 3.18 2.92 -67.81 -0.20 2.98 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 C -0.13 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 14 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 15 N -0.61 -8.13 2.97 -172.77 -0.51 -8.65 16 16 C 0.51 6.67 7.70 -10.99 -0.08 6.58 16 17 O -0.54 -9.41 15.39 5.55 0.09 -9.32 16 18 C -0.14 -1.06 4.03 -27.89 -0.11 -1.18 16 19 C -0.03 -0.26 5.07 -27.89 -0.14 -0.40 16 20 C 0.00 -0.03 6.56 -82.09 -0.54 -0.56 16 21 C -0.05 -0.41 11.99 -17.74 -0.21 -0.62 16 22 N -0.27 -3.07 12.41 30.23 0.38 -2.70 16 23 N -0.08 -0.91 13.38 60.35 0.81 -0.10 16 24 N -0.39 -2.91 6.98 33.54 0.23 -2.67 16 25 H 0.45 1.83 8.96 -190.40 -1.71 0.13 16 26 C 0.09 1.62 6.02 -3.71 -0.02 1.60 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.39 9.81 7.80 -40.82 -0.32 9.49 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.54 5.95 -51.93 -0.31 0.23 16 35 H 0.10 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.09 0.59 7.70 -51.93 -0.40 0.19 16 37 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.92 7.00 -51.93 -0.36 1.55 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -34.32 340.35 -7.61 -41.93 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.28 Total: 4.92 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.88 Total: -1.32 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 1.35 Total: -58.58 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.32 -7.61 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000230574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.043 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds