Wall clock time and date at job start Tue Mar 31 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00471 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00019 * 3 2 1 5 5 H 1.48507 * 109.46947 * 29.99898 * 3 2 1 6 6 H 1.48498 * 109.47305 * 149.99544 * 3 2 1 7 7 C 1.38814 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52625 * 325.08065 * 10 9 7 12 12 C 1.53046 * 109.49651 * 204.99988 * 10 9 7 13 13 C 1.53039 * 109.52798 * 178.67721 * 12 10 9 14 14 C 1.53195 * 109.31257 * 61.36716 * 13 12 10 15 15 N 1.46919 * 108.77845 * 305.36660 * 14 13 12 16 16 C 1.34771 * 120.63242 * 233.58225 * 15 14 13 17 17 O 1.21287 * 119.99858 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00285 * 0.02562 * 16 15 14 19 19 C 1.52996 * 109.47586 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47338 * 179.97438 * 19 18 16 21 21 C 1.35343 * 126.91568 * 274.68288 * 20 19 18 22 22 N 1.33774 * 106.50085 * 179.90513 * 21 20 19 23 23 N 1.28630 * 108.88336 * 0.36420 * 22 21 20 24 24 N 1.28713 * 110.17994 * 359.76832 * 23 22 21 25 25 H 0.97001 * 125.87044 * 180.02562 * 24 23 22 26 26 C 1.46931 * 118.73612 * 53.60997 * 15 14 13 27 27 H 0.97000 * 119.99768 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99598 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46115 * 58.66174 * 12 10 9 30 30 H 1.09004 * 109.45806 * 298.69059 * 12 10 9 31 31 H 1.08997 * 109.50134 * 181.32407 * 13 12 10 32 32 H 1.09000 * 109.49863 * 301.42271 * 13 12 10 33 33 H 1.08997 * 109.58182 * 65.15696 * 14 13 12 34 34 H 1.09002 * 109.58573 * 185.43694 * 14 13 12 35 35 H 1.09001 * 109.46653 * 299.99587 * 18 16 15 36 36 H 1.09000 * 109.47212 * 59.99022 * 18 16 15 37 37 H 1.09001 * 109.46802 * 299.99514 * 19 18 16 38 38 H 1.09000 * 109.47629 * 59.99296 * 19 18 16 39 39 H 1.08000 * 126.74765 * 0.03636 * 21 20 19 40 40 H 1.08998 * 109.58959 * 66.17523 * 26 15 14 41 41 H 1.09003 * 109.58181 * 186.46006 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9696 -3.5512 -0.5875 12 6 1.1809 -4.7529 -0.6092 13 6 1.9573 -6.0714 -0.6398 14 6 2.3174 -6.4806 0.7919 15 7 3.0362 -5.3719 1.4342 16 6 4.2389 -5.5740 2.0079 17 8 4.8224 -4.6503 2.5345 18 6 4.8591 -6.9473 1.9942 19 6 6.2128 -6.9028 2.7057 20 6 6.8327 -8.2762 2.6925 21 6 6.6125 -9.2760 3.5777 22 7 7.3658 -10.3078 3.1808 23 7 8.0156 -9.9667 2.1244 24 7 7.7260 -8.7562 1.7964 25 1 8.0859 -8.2714 1.0373 26 6 2.4187 -4.0386 1.4396 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0002 29 1 0.9022 -4.4720 -1.6248 30 1 0.2811 -4.8753 -0.0063 31 1 1.3409 -6.8462 -1.0955 32 1 2.8700 -5.9428 -1.2217 33 1 1.4066 -6.6976 1.3499 34 1 2.9522 -7.3665 0.7700 35 1 4.2011 -7.6482 2.5080 36 1 5.0013 -7.2715 0.9633 37 1 6.8706 -6.2020 2.1915 38 1 6.0711 -6.5784 3.7366 39 1 5.9560 -9.2473 4.4348 40 1 1.5161 -4.0564 2.0504 41 1 3.1217 -3.3121 1.8473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000230574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:50 Heat of formation + Delta-G solvation = 35.538631 kcal Electronic energy + Delta-G solvation = -23164.880340 eV Core-core repulsion = 19694.706379 eV Total energy + Delta-G solvation = -3470.173961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.27569 -41.18121 -38.75403 -36.19794 -35.46351 -34.15621 -33.85709 -32.71336 -31.19591 -29.82321 -27.03273 -25.87429 -25.12203 -23.94363 -23.22799 -22.62532 -21.52713 -19.87847 -19.24883 -19.11384 -18.09202 -17.18407 -16.91519 -16.66580 -16.50210 -15.68552 -15.46305 -15.38776 -15.17700 -15.17077 -14.62306 -14.28530 -14.01485 -13.69839 -13.63258 -13.35659 -12.99743 -12.89517 -12.73113 -12.47765 -12.29797 -12.22315 -11.99226 -11.88292 -11.77926 -11.65834 -11.56672 -11.32936 -11.10972 -10.79499 -10.13623 -9.70019 -9.00842 -7.99440 -5.28486 0.57120 1.44123 1.45317 1.54069 1.55110 1.68299 1.85292 2.10567 2.53119 3.33920 3.36173 3.67798 3.76906 3.84822 3.97834 4.04059 4.06435 4.13263 4.28213 4.31740 4.37597 4.41838 4.50283 4.57729 4.68096 4.79925 4.90372 4.94476 5.02044 5.05686 5.08717 5.16712 5.23470 5.40158 5.44109 5.48192 5.60895 5.99135 6.23535 6.54042 7.23831 7.29953 7.44927 8.03290 8.27223 9.23342 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.003027 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.934425 B = 9249.386301 C = 9946.937560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.066 0.934 9 N -0.732 5.732 10 C 0.167 3.833 11 H 0.032 0.968 12 C -0.120 4.120 13 C -0.122 4.122 14 C 0.102 3.898 15 N -0.607 5.607 16 C 0.503 3.497 17 O -0.593 6.593 18 C -0.122 4.122 19 C -0.027 4.027 20 C 0.010 3.990 21 C -0.051 4.051 22 N -0.302 5.302 23 N -0.111 5.111 24 N -0.375 5.375 25 H 0.461 0.539 26 C 0.107 3.893 27 H 0.253 0.747 28 H 0.376 0.624 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.214 0.786 40 H 0.054 0.946 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -20.967 1.812 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.372 5.372 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.020 4.020 15 N -0.339 5.339 16 C 0.293 3.707 17 O -0.474 6.474 18 C -0.162 4.162 19 C -0.067 4.067 20 C -0.125 4.125 21 C -0.209 4.209 22 N -0.168 5.168 23 N -0.091 5.091 24 N -0.098 5.098 25 H 0.310 0.690 26 C -0.019 4.019 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.086 -21.730 1.815 24.025 hybrid contribution -0.532 2.857 -0.158 2.910 sum 9.554 -18.873 1.657 21.218 Atomic orbital electron populations 1.69789 1.06363 1.26156 1.59184 1.25489 0.96379 1.00841 1.03488 0.85230 0.77674 0.79874 0.77555 1.21108 1.21870 1.20064 1.19513 0.91047 0.85447 1.41508 0.91573 1.42542 1.05530 1.00742 1.88342 1.20661 0.94568 0.85892 0.93119 0.94997 1.21754 0.98559 0.94839 1.00695 1.21881 1.00857 0.96482 0.96865 1.22102 0.98278 0.88670 0.92912 1.48339 1.19376 1.10245 1.55966 1.21400 0.80404 0.91830 0.77020 1.90714 1.62789 1.46633 1.47298 1.21696 0.96891 0.92774 1.04854 1.19808 0.94673 0.88023 1.04177 1.22299 0.97426 0.99312 0.93429 1.23940 1.04076 0.89296 1.03584 1.75087 1.08687 1.26826 1.06241 1.78256 1.21590 0.96979 1.12246 1.45203 1.30093 1.11002 1.23533 0.69005 1.22146 0.96641 0.83650 0.99441 0.93857 0.79121 0.92415 0.91727 0.87447 0.91604 0.89969 0.86004 0.85427 0.86403 0.89705 0.88033 0.76898 0.92747 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.52 13.06 21.65 0.28 -58.23 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.24 -13.65 9.93 84.03 0.83 -12.82 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -36.39 5.12 -322.58 -1.65 -38.04 16 10 C 0.17 6.37 2.92 45.07 0.13 6.51 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 12 C -0.12 -3.37 5.35 30.62 0.16 -3.20 16 13 C -0.12 -2.13 6.08 30.67 0.19 -1.94 16 14 C 0.10 1.53 6.34 86.36 0.55 2.08 16 15 N -0.61 -15.16 2.97 -818.91 -2.43 -17.60 16 16 C 0.50 12.23 7.70 87.66 0.67 12.90 16 17 O -0.59 -20.62 15.39 -3.05 -0.05 -20.66 16 18 C -0.12 -1.42 4.03 29.85 0.12 -1.29 16 19 C -0.03 -0.32 5.07 29.84 0.15 -0.17 16 20 C 0.01 0.13 6.56 41.35 0.27 0.40 16 21 C -0.05 -0.75 11.99 83.73 1.00 0.25 16 22 N -0.30 -6.46 12.41 -58.26 -0.72 -7.18 16 23 N -0.11 -2.19 13.38 37.02 0.50 -1.70 16 24 N -0.38 -4.68 6.98 -47.79 -0.33 -5.01 16 25 H 0.46 2.63 8.96 -219.96 -1.97 0.66 16 26 C 0.11 3.86 6.02 86.36 0.52 4.38 16 27 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.38 19.81 7.80 -92.71 -0.72 19.08 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 0.87 5.95 -2.39 -0.01 0.86 16 35 H 0.13 0.86 7.94 -2.39 -0.02 0.84 16 36 H 0.12 0.85 7.70 -2.39 -0.02 0.83 16 37 H 0.08 1.12 8.10 -2.39 -0.02 1.11 16 38 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 39 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 41 H 0.05 2.16 7.00 -2.39 -0.02 2.14 16 Total: -1.00 -78.75 340.35 1.05 -77.70 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.63 Total: 18.46 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.07 Total: 3.57 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -4.36 Total: -127.76 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -78.75 1.05 -77.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000230574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.235 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds