Wall clock time and date at job start Tue Mar 31 2020 03:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50248 * 35.07435 * 10 9 7 12 12 C 1.53048 * 109.49544 * 155.16586 * 10 9 7 13 13 C 1.53042 * 109.53938 * 181.32135 * 12 10 9 14 14 C 1.53192 * 109.31105 * 298.63236 * 13 12 10 15 15 N 1.46932 * 108.77432 * 54.63460 * 14 13 12 16 16 C 1.34776 * 120.62713 * 126.41442 * 15 14 13 17 17 O 1.21281 * 120.00068 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00196 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47203 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47203 * 179.97438 * 19 18 16 21 21 C 1.35352 * 126.91278 * 274.68299 * 20 19 18 22 22 N 1.33766 * 106.49677 * 179.90498 * 21 20 19 23 23 N 1.28637 * 108.88887 * 0.36703 * 22 21 20 24 24 N 1.28714 * 110.17510 * 359.76888 * 23 22 21 25 25 H 0.96998 * 125.86632 * 179.97438 * 24 23 22 26 26 C 1.46928 * 118.74093 * 306.39097 * 15 14 13 27 27 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 29 29 H 1.09011 * 109.45730 * 301.33994 * 12 10 9 30 30 H 1.08993 * 109.46223 * 61.29668 * 12 10 9 31 31 H 1.09004 * 109.49475 * 178.68137 * 13 12 10 32 32 H 1.08998 * 109.52309 * 58.59701 * 13 12 10 33 33 H 1.09000 * 109.58332 * 294.85141 * 14 13 12 34 34 H 1.08992 * 109.58688 * 174.42414 * 14 13 12 35 35 H 1.09004 * 109.47001 * 299.99886 * 18 16 15 36 36 H 1.09001 * 109.47065 * 59.99893 * 18 16 15 37 37 H 1.09004 * 109.46888 * 299.99758 * 19 18 16 38 38 H 1.09001 * 109.47358 * 59.99875 * 19 18 16 39 39 H 1.08003 * 126.74786 * 0.03699 * 21 20 19 40 40 H 1.08997 * 109.58513 * 293.82388 * 26 15 14 41 41 H 1.08997 * 109.70332 * 173.46355 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9682 -3.5514 0.5910 12 6 1.1796 -4.7538 0.6065 13 6 1.9557 -6.0724 0.6372 14 6 2.3194 -6.4797 -0.7941 15 7 3.0400 -5.3700 -1.4329 16 6 4.2441 -5.5715 -2.0038 17 8 4.8288 -4.6474 -2.5284 18 6 4.8641 -6.9450 -1.9904 19 6 6.2197 -6.8996 -2.6983 20 6 6.8399 -8.2730 -2.6843 21 6 7.5864 -8.8179 -1.6954 22 7 7.9229 -10.0456 -2.1061 23 7 7.4249 -10.2449 -3.2752 24 7 6.7676 -9.2074 -3.6604 25 1 6.3009 -9.1117 -4.5054 26 6 2.4228 -4.0366 -1.4380 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0042 29 1 0.8982 -4.4742 1.6219 30 1 0.2812 -4.8752 0.0014 31 1 1.3379 -6.8477 1.0903 32 1 2.8668 -5.9452 1.2218 33 1 1.4099 -6.6956 -1.3548 34 1 2.9560 -7.3641 -0.7718 35 1 5.0036 -7.2706 -0.9596 36 1 4.2073 -7.6451 -2.5068 37 1 6.0805 -6.5739 -3.7292 38 1 6.8762 -6.1996 -2.1815 39 1 7.8553 -8.3535 -0.7582 40 1 1.5218 -4.0534 -2.0511 41 1 3.1258 -3.3078 -1.8413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000230575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:53 Heat of formation + Delta-G solvation = 61.182226 kcal Electronic energy + Delta-G solvation = -23161.868539 eV Core-core repulsion = 19692.806568 eV Total energy + Delta-G solvation = -3469.061971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.61764 -40.09090 -37.51430 -34.77006 -34.50871 -33.46659 -32.37393 -31.27482 -30.31053 -28.31886 -26.03765 -24.39312 -23.85024 -23.26152 -21.96042 -21.94124 -20.21928 -18.81161 -18.57989 -17.14748 -17.10582 -16.42961 -15.87914 -15.62890 -14.91123 -14.64558 -14.52607 -14.23832 -13.95421 -13.68936 -13.45574 -13.30845 -12.79987 -12.56574 -12.48126 -12.29285 -12.03889 -11.64393 -11.39896 -11.13415 -11.09795 -10.90351 -10.89446 -10.71884 -10.64513 -10.21625 -9.88123 -9.86514 -9.67270 -9.43266 -9.12321 -8.42546 -7.04535 -5.82902 -3.12948 1.20315 2.23257 2.39432 2.68322 3.10987 3.41519 3.48129 3.50161 4.05166 4.31691 4.52689 4.54510 4.61738 4.71817 4.84405 4.91036 5.01081 5.09980 5.16718 5.18368 5.43289 5.48188 5.56369 5.61103 5.63960 5.73608 5.82526 5.85680 5.96583 6.10093 6.15317 6.28289 6.42542 6.48032 6.65064 6.76859 6.94308 7.56558 7.68094 8.11995 8.26511 8.35432 9.47168 10.00868 10.35837 11.39362 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.003022 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.783301 B = 9264.333589 C = 9960.381595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.509 3.491 17 O -0.542 6.542 18 C -0.136 4.136 19 C -0.034 4.034 20 C -0.004 4.004 21 C -0.046 4.046 22 N -0.266 5.266 23 N -0.085 5.085 24 N -0.390 5.390 25 H 0.448 0.552 26 C 0.092 3.908 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.192 0.808 40 H 0.060 0.940 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -19.137 -3.879 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.296 3.704 17 O -0.420 6.420 18 C -0.176 4.176 19 C -0.074 4.074 20 C -0.138 4.138 21 C -0.204 4.204 22 N -0.134 5.134 23 N -0.066 5.066 24 N -0.111 5.111 25 H 0.293 0.707 26 C -0.033 4.033 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.209 0.791 40 H 0.079 0.921 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.482 -19.942 -4.379 22.109 hybrid contribution -0.706 2.047 -0.281 2.183 sum 7.776 -17.895 -4.660 20.060 Atomic orbital electron populations 1.69669 1.05141 1.25700 1.57480 1.24754 0.95522 0.97797 1.02623 0.86120 0.78971 0.83960 0.77194 1.20395 1.21781 1.21818 1.19311 0.91119 0.83943 1.42985 0.90977 1.42387 1.05817 0.99610 1.88113 1.20484 0.94891 0.86449 0.92421 0.93150 1.21832 0.98695 0.94100 1.01891 1.21884 1.00997 0.98268 0.95766 1.21755 0.96958 0.88950 0.94048 1.48306 1.18734 1.11158 1.55658 1.20435 0.81132 0.90281 0.78519 1.90726 1.61540 1.44405 1.45317 1.21689 0.96499 0.96024 1.03427 1.19914 0.95425 0.88562 1.03533 1.22390 1.04856 0.95518 0.91008 1.23481 1.02222 0.92839 1.01813 1.75109 1.18595 1.16035 1.03613 1.78300 1.09513 1.09463 1.09284 1.45162 1.37330 1.10974 1.17637 0.70696 1.22794 0.97805 0.81586 1.01101 0.93483 0.78073 0.91366 0.92050 0.90976 0.91499 0.91398 0.90305 0.88216 0.89165 0.89426 0.87602 0.79094 0.92128 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -17.34 5.13 -53.31 -0.27 -17.61 16 10 C 0.17 3.18 2.92 -67.81 -0.20 2.98 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.13 -1.86 5.35 -26.68 -0.14 -2.00 16 13 C -0.13 -1.38 6.08 -26.61 -0.16 -1.55 16 14 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 15 N -0.61 -8.13 2.97 -172.77 -0.51 -8.64 16 16 C 0.51 6.66 7.70 -10.99 -0.08 6.58 16 17 O -0.54 -9.39 15.40 5.56 0.09 -9.31 16 18 C -0.14 -1.06 4.03 -27.88 -0.11 -1.18 16 19 C -0.03 -0.26 5.07 -27.88 -0.14 -0.40 16 20 C 0.00 -0.03 6.56 -82.08 -0.54 -0.57 16 21 C -0.05 -0.41 11.99 -17.74 -0.21 -0.62 16 22 N -0.27 -3.08 12.41 30.23 0.38 -2.71 16 23 N -0.09 -0.91 13.38 60.35 0.81 -0.10 16 24 N -0.39 -2.85 6.98 33.54 0.23 -2.62 16 25 H 0.45 1.70 8.96 -190.40 -1.71 0.00 16 26 C 0.09 1.62 6.01 -3.71 -0.02 1.60 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.39 9.81 7.80 -40.82 -0.32 9.50 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 35 H 0.10 0.65 7.69 -51.93 -0.40 0.25 16 36 H 0.09 0.55 7.94 -51.93 -0.41 0.14 16 37 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.11 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.19 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -34.38 340.35 -7.61 -41.99 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.28 Total: 4.80 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.88 Total: -1.32 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 1.35 Total: -58.58 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.38 -7.61 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000230575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.174 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds