Wall clock time and date at job start Tue Mar 31 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50248 * 35.07435 * 10 9 7 12 12 C 1.53048 * 109.49544 * 155.16586 * 10 9 7 13 13 C 1.53042 * 109.53938 * 181.32135 * 12 10 9 14 14 C 1.53192 * 109.31105 * 298.63236 * 13 12 10 15 15 N 1.46932 * 108.77432 * 54.63460 * 14 13 12 16 16 C 1.34776 * 120.62713 * 126.41442 * 15 14 13 17 17 O 1.21281 * 120.00068 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00196 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47203 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47203 * 179.97438 * 19 18 16 21 21 C 1.35352 * 126.91278 * 274.68299 * 20 19 18 22 22 N 1.33766 * 106.49677 * 179.90498 * 21 20 19 23 23 N 1.28637 * 108.88887 * 0.36703 * 22 21 20 24 24 N 1.28714 * 110.17510 * 359.76888 * 23 22 21 25 25 H 0.96998 * 125.86632 * 179.97438 * 24 23 22 26 26 C 1.46928 * 118.74093 * 306.39097 * 15 14 13 27 27 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 29 29 H 1.09011 * 109.45730 * 301.33994 * 12 10 9 30 30 H 1.08993 * 109.46223 * 61.29668 * 12 10 9 31 31 H 1.09004 * 109.49475 * 178.68137 * 13 12 10 32 32 H 1.08998 * 109.52309 * 58.59701 * 13 12 10 33 33 H 1.09000 * 109.58332 * 294.85141 * 14 13 12 34 34 H 1.08992 * 109.58688 * 174.42414 * 14 13 12 35 35 H 1.09004 * 109.47001 * 299.99886 * 18 16 15 36 36 H 1.09001 * 109.47065 * 59.99893 * 18 16 15 37 37 H 1.09004 * 109.46888 * 299.99758 * 19 18 16 38 38 H 1.09001 * 109.47358 * 59.99875 * 19 18 16 39 39 H 1.08003 * 126.74786 * 0.03699 * 21 20 19 40 40 H 1.08997 * 109.58513 * 293.82388 * 26 15 14 41 41 H 1.08997 * 109.70332 * 173.46355 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9682 -3.5514 0.5910 12 6 1.1796 -4.7538 0.6065 13 6 1.9557 -6.0724 0.6372 14 6 2.3194 -6.4797 -0.7941 15 7 3.0400 -5.3700 -1.4329 16 6 4.2441 -5.5715 -2.0038 17 8 4.8288 -4.6474 -2.5284 18 6 4.8641 -6.9450 -1.9904 19 6 6.2197 -6.8996 -2.6983 20 6 6.8399 -8.2730 -2.6843 21 6 7.5864 -8.8179 -1.6954 22 7 7.9229 -10.0456 -2.1061 23 7 7.4249 -10.2449 -3.2752 24 7 6.7676 -9.2074 -3.6604 25 1 6.3009 -9.1117 -4.5054 26 6 2.4228 -4.0366 -1.4380 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0042 29 1 0.8982 -4.4742 1.6219 30 1 0.2812 -4.8752 0.0014 31 1 1.3379 -6.8477 1.0903 32 1 2.8668 -5.9452 1.2218 33 1 1.4099 -6.6956 -1.3548 34 1 2.9560 -7.3641 -0.7718 35 1 5.0036 -7.2706 -0.9596 36 1 4.2073 -7.6451 -2.5068 37 1 6.0805 -6.5739 -3.7292 38 1 6.8762 -6.1996 -2.1815 39 1 7.8553 -8.3535 -0.7582 40 1 1.5218 -4.0534 -2.0511 41 1 3.1258 -3.3078 -1.8413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000230575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:52 Heat of formation + Delta-G solvation = 35.548980 kcal Electronic energy + Delta-G solvation = -23162.980080 eV Core-core repulsion = 19692.806568 eV Total energy + Delta-G solvation = -3470.173512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.27635 -41.17921 -38.75051 -36.19544 -35.46357 -34.15832 -33.85349 -32.70652 -31.19501 -29.82046 -27.03125 -25.87155 -25.12238 -23.94763 -23.22158 -22.62390 -21.52533 -19.87268 -19.24833 -19.10596 -18.10399 -17.18168 -16.89301 -16.65306 -16.51378 -15.72179 -15.46100 -15.38550 -15.23319 -15.07892 -14.55062 -14.36952 -14.01571 -13.69053 -13.61553 -13.35296 -12.99582 -12.91486 -12.73080 -12.49694 -12.28634 -12.16796 -11.98947 -11.86835 -11.78482 -11.65424 -11.56448 -11.32076 -11.11405 -10.79510 -10.13675 -9.69936 -9.00393 -7.99220 -5.28186 0.56912 1.44288 1.45346 1.54779 1.55303 1.68033 1.85431 2.10647 2.53433 3.34266 3.36258 3.67629 3.77593 3.84890 3.98263 4.02781 4.08700 4.13446 4.28366 4.32258 4.37513 4.42349 4.50446 4.57592 4.68440 4.79927 4.90652 4.94710 5.02274 5.05893 5.09197 5.17984 5.23211 5.40954 5.45057 5.49328 5.61334 5.99801 6.23966 6.54070 7.23857 7.30373 7.44732 8.03650 8.27549 9.23748 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.003022 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.783301 B = 9264.333589 C = 9960.381595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.067 0.933 9 N -0.732 5.732 10 C 0.167 3.833 11 H 0.033 0.967 12 C -0.120 4.120 13 C -0.123 4.123 14 C 0.102 3.898 15 N -0.607 5.607 16 C 0.504 3.496 17 O -0.593 6.593 18 C -0.122 4.122 19 C -0.027 4.027 20 C 0.011 3.989 21 C -0.052 4.052 22 N -0.302 5.302 23 N -0.110 5.110 24 N -0.374 5.374 25 H 0.462 0.538 26 C 0.107 3.893 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.213 0.787 40 H 0.054 0.946 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 -21.465 -3.668 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.085 0.915 9 N -0.372 5.372 10 C 0.057 3.943 11 H 0.051 0.949 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.019 4.019 15 N -0.339 5.339 16 C 0.294 3.706 17 O -0.474 6.474 18 C -0.162 4.162 19 C -0.067 4.067 20 C -0.124 4.124 21 C -0.210 4.210 22 N -0.169 5.169 23 N -0.090 5.090 24 N -0.097 5.097 25 H 0.311 0.689 26 C -0.019 4.019 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.229 0.771 40 H 0.072 0.928 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.922 -22.358 -4.178 24.432 hybrid contribution -0.816 2.741 -0.364 2.882 sum 8.107 -19.617 -4.542 21.707 Atomic orbital electron populations 1.69797 1.06362 1.26064 1.59318 1.25486 0.96379 1.00836 1.03547 0.85166 0.78139 0.80185 0.76861 1.19592 1.21945 1.21612 1.19554 0.91065 0.85422 1.41282 0.91530 1.42552 1.05531 1.00763 1.88324 1.20669 0.94598 0.85881 0.93139 0.94938 1.21753 0.98512 0.94856 1.00715 1.21882 1.00938 0.96449 0.96846 1.22108 0.98148 0.88664 0.93008 1.48346 1.19244 1.10205 1.56144 1.21398 0.80374 0.91862 0.77014 1.90712 1.62720 1.46617 1.47364 1.21698 0.96489 0.92572 1.05466 1.19808 0.95209 0.88127 1.03526 1.22287 1.04335 0.95164 0.90634 1.23932 1.01991 0.92161 1.02906 1.75087 1.19838 1.17614 1.04314 1.78254 1.10660 1.10629 1.09478 1.45184 1.36315 1.10146 1.18094 0.68949 1.22132 0.96602 0.83671 0.99453 0.93880 0.79134 0.92392 0.91788 0.87449 0.91454 0.90074 0.85985 0.85676 0.86149 0.89433 0.88287 0.77066 0.92807 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.24 -13.55 9.93 84.03 0.83 -12.72 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -36.41 5.13 -322.56 -1.65 -38.07 16 10 C 0.17 6.36 2.92 45.07 0.13 6.50 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.12 -3.37 5.35 30.62 0.16 -3.20 16 13 C -0.12 -2.14 6.08 30.67 0.19 -1.95 16 14 C 0.10 1.54 6.34 86.36 0.55 2.08 16 15 N -0.61 -15.15 2.97 -818.91 -2.43 -17.58 16 16 C 0.50 12.20 7.70 87.66 0.67 12.88 16 17 O -0.59 -20.56 15.40 -3.03 -0.05 -20.61 16 18 C -0.12 -1.41 4.03 29.85 0.12 -1.29 16 19 C -0.03 -0.32 5.07 29.85 0.15 -0.17 16 20 C 0.01 0.13 6.56 41.36 0.27 0.40 16 21 C -0.05 -0.79 11.99 83.73 1.00 0.22 16 22 N -0.30 -6.50 12.41 -58.26 -0.72 -7.23 16 23 N -0.11 -2.16 13.38 37.02 0.50 -1.67 16 24 N -0.37 -4.52 6.98 -47.79 -0.33 -4.85 16 25 H 0.46 2.28 8.96 -219.96 -1.97 0.30 16 26 C 0.11 3.86 6.01 86.36 0.52 4.38 16 27 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 28 H 0.38 19.80 7.80 -92.71 -0.72 19.08 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 0.87 5.93 -2.39 -0.01 0.86 16 35 H 0.13 0.93 7.69 -2.38 -0.02 0.91 16 36 H 0.12 0.77 7.94 -2.39 -0.02 0.75 16 37 H 0.09 1.10 8.10 -2.38 -0.02 1.08 16 38 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.21 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 2.16 7.01 -2.39 -0.02 2.15 16 Total: -1.00 -78.87 340.35 1.05 -77.82 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -1.63 Total: 18.12 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.07 Total: 3.56 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.37 Total: -127.69 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -78.87 1.05 -77.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000230575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.366 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds