Wall clock time and date at job start Tue Mar 31 2020 03:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36592 * 126.57789 * 2 1 4 4 C 1.47528 * 125.77166 * 359.96174 * 3 2 1 5 5 O 1.21587 * 119.99917 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99819 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99981 * 179.97438 * 6 4 3 8 8 C 1.53081 * 109.45080 * 84.78441 * 7 6 4 9 9 C 1.53190 * 109.29209 * 181.24433 * 8 7 6 10 10 N 1.46921 * 108.89311 * 305.57883 * 9 8 7 11 11 C 1.36940 * 120.63187 * 233.51481 * 10 9 8 12 12 H 1.08001 * 120.00319 * 152.61971 * 11 10 9 13 13 C 1.38813 * 119.99903 * 332.62203 * 11 10 9 14 14 N 1.31624 * 120.00070 * 159.34992 * 13 11 10 15 15 Si 1.86800 * 120.00077 * 339.35529 * 13 11 10 16 16 H 1.48494 * 109.47321 * 92.87851 * 15 13 11 17 17 H 1.48501 * 109.47194 * 212.88430 * 15 13 11 18 18 H 1.48509 * 109.46983 * 332.87654 * 15 13 11 19 19 C 1.46923 * 118.74178 * 53.54201 * 10 9 8 20 20 C 1.53035 * 109.46006 * 204.99622 * 7 6 4 21 21 N 1.34401 * 108.45724 * 180.22271 * 3 2 1 22 22 N 1.28761 * 109.52358 * 359.58407 * 21 3 2 23 23 N 1.34810 * 126.57993 * 179.97438 * 2 1 3 24 24 C 1.46500 * 126.59587 * 0.05277 * 23 2 1 25 25 H 1.08995 * 109.47065 * 89.99756 * 1 2 3 26 26 H 1.09004 * 109.46799 * 210.00054 * 1 2 3 27 27 H 1.09005 * 109.46881 * 329.99699 * 1 2 3 28 28 H 0.96997 * 119.99900 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.45705 * 324.97360 * 7 6 4 30 30 H 1.08992 * 109.38800 * 61.36852 * 8 7 6 31 31 H 1.09002 * 109.61927 * 301.26130 * 8 7 6 32 32 H 1.08999 * 109.58729 * 185.71870 * 9 8 7 33 33 H 1.09004 * 109.58886 * 65.43758 * 9 8 7 34 34 H 0.97001 * 119.99914 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.59094 * 66.17180 * 19 10 9 36 36 H 1.09001 * 109.59077 * 186.46452 * 19 10 9 37 37 H 1.09002 * 109.49848 * 58.66419 * 20 7 6 38 38 H 1.08999 * 109.49849 * 298.56228 * 20 7 6 39 39 H 1.08998 * 109.47014 * 89.99966 * 24 23 2 40 40 H 1.08996 * 109.47371 * 210.00244 * 24 23 2 41 41 H 1.09002 * 109.46920 * 330.00389 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0008 5 8 0.6860 2.7628 -0.0020 6 7 2.7817 3.4988 -0.0012 7 6 2.3375 4.8948 -0.0026 8 6 2.0573 5.3420 1.4344 9 6 1.5635 6.7921 1.4260 10 7 2.5421 7.6238 0.7122 11 6 3.0657 8.7444 1.2997 12 1 4.0472 9.0946 1.0158 13 6 2.3351 9.4304 2.2602 14 7 2.9483 10.2316 3.1055 15 14 0.4818 9.2163 2.3532 16 1 0.1559 8.1382 3.3210 17 1 -0.1416 10.4879 2.8002 18 1 -0.0424 8.8527 1.0122 19 6 2.9477 7.2306 -0.6440 20 6 3.4295 5.7767 -0.6126 21 7 3.5984 0.6789 -0.0050 22 7 3.6299 -0.6083 0.0008 23 7 2.3104 -1.0826 0.0005 24 6 1.8864 -2.4849 0.0000 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.7292 3.2913 -0.0006 29 1 1.4257 4.9852 -0.5929 30 1 2.9740 5.2732 2.0200 31 1 1.2943 4.7004 1.8752 32 1 1.4594 7.1486 2.4508 33 1 0.5994 6.8470 0.9203 34 1 2.4378 10.7107 3.7770 35 1 2.0972 7.3191 -1.3200 36 1 3.7552 7.8779 -0.9861 37 1 3.6425 5.4419 -1.6278 38 1 4.3339 5.7061 -0.0083 39 1 1.7820 -2.8325 -1.0277 40 1 2.6327 -3.0903 0.5144 41 1 0.9289 -2.5750 0.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002517709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:49 Heat of formation + Delta-G solvation = 82.310654 kcal Electronic energy + Delta-G solvation = -23624.378335 eV Core-core repulsion = 20156.232561 eV Total energy + Delta-G solvation = -3468.145774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48018 -39.55487 -37.54400 -35.28834 -34.49146 -32.58225 -32.11424 -30.37127 -30.21375 -28.28844 -27.79177 -25.12227 -23.51182 -22.79374 -21.94897 -21.13718 -20.34003 -19.63739 -17.99205 -16.84706 -16.69440 -16.17613 -15.91629 -15.05909 -14.75123 -14.46523 -14.18940 -14.13034 -13.74606 -13.68586 -13.61287 -13.36712 -13.05530 -12.85888 -12.85000 -12.31022 -12.16495 -11.90785 -11.74799 -11.40899 -11.03021 -10.79885 -10.55474 -10.50570 -10.15946 -10.07512 -9.96362 -9.71597 -9.46685 -9.36134 -8.75648 -8.56368 -6.95359 -5.91250 -3.27121 0.87298 1.57743 1.73543 3.22811 3.29997 3.37824 3.53174 3.57114 3.95536 4.03730 4.31132 4.48819 4.55424 4.57659 4.76910 4.96856 5.00451 5.13886 5.22016 5.34794 5.36620 5.45899 5.50524 5.69936 5.72128 5.87588 6.08533 6.10195 6.16849 6.21368 6.36459 6.46836 6.61676 6.68250 6.73142 6.77901 6.97038 7.54356 7.81030 7.99907 8.27957 8.36335 8.97505 9.75852 10.13388 11.24645 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.003403 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.736463 B = 8226.439782 C = 8614.787603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.103 4.103 4 C 0.603 3.397 5 O -0.539 6.539 6 N -0.707 5.707 7 C 0.152 3.848 8 C -0.141 4.141 9 C 0.129 3.871 10 N -0.607 5.607 11 C -0.260 4.260 12 H 0.086 0.914 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 0.882 3.118 16 H -0.288 1.288 17 H -0.304 1.304 18 H -0.269 1.269 19 C 0.153 3.847 20 C -0.141 4.141 21 N -0.202 5.202 22 N -0.071 5.071 23 N -0.367 5.367 24 C 0.088 3.912 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.405 0.595 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -25.813 -7.764 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.242 4.242 4 C 0.387 3.613 5 O -0.416 6.416 6 N -0.356 5.356 7 C 0.048 3.952 8 C -0.182 4.182 9 C 0.003 3.997 10 N -0.330 5.330 11 C -0.388 4.388 12 H 0.104 0.896 13 C -0.176 4.176 14 N -0.552 5.552 15 Si 0.712 3.288 16 H -0.216 1.216 17 H -0.232 1.232 18 H -0.194 1.194 19 C 0.026 3.974 20 C -0.181 4.181 21 N -0.075 5.075 22 N -0.050 5.050 23 N -0.153 5.153 24 C -0.054 4.054 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.132 0.868 28 H 0.240 0.760 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.554 -25.896 -7.645 27.234 hybrid contribution -1.493 -0.263 0.241 1.535 sum -5.047 -26.160 -7.404 27.652 Atomic orbital electron populations 1.20733 0.84586 1.05446 1.04658 1.21943 0.96281 0.86327 0.97068 1.21341 0.88917 0.95698 1.18285 1.16719 0.85764 0.82378 0.76486 1.90761 1.15882 1.83524 1.51396 1.46071 1.09941 1.06265 1.73339 1.21054 0.98470 0.77944 0.97707 1.22409 1.01669 0.98422 0.95653 1.21312 0.91889 0.88957 0.97563 1.44404 1.49922 1.26791 1.11925 1.18923 0.99549 1.01494 1.18823 0.89635 1.25279 0.97761 0.96926 0.97627 1.69842 1.35207 1.31902 1.18247 0.86962 0.87974 0.75625 0.78190 1.21584 1.23201 1.19443 1.20863 0.97888 0.91757 0.86910 1.22340 0.98257 0.97645 0.99873 1.74594 1.19156 1.04114 1.09622 1.81990 0.95936 1.03487 1.23606 1.50272 1.06522 1.07749 1.50781 1.22155 1.02435 0.76102 1.04662 0.88992 0.90769 0.86780 0.76024 0.89692 0.91534 0.92272 0.90753 0.95458 0.92800 0.95687 0.91325 0.92002 0.91203 0.89276 0.88077 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.57 36.01 0.34 -0.37 16 2 C 0.12 1.27 7.02 -81.88 -0.57 0.70 16 3 C -0.10 -1.38 6.99 -83.55 -0.58 -1.97 16 4 C 0.60 9.13 7.78 -12.47 -0.10 9.04 16 5 O -0.54 -9.11 14.38 5.29 0.08 -9.03 16 6 N -0.71 -10.45 5.07 -54.79 -0.28 -10.73 16 7 C 0.15 2.53 2.41 -67.87 -0.16 2.36 16 8 C -0.14 -2.68 5.66 -26.59 -0.15 -2.83 16 9 C 0.13 2.91 4.20 -3.71 -0.02 2.89 16 10 N -0.61 -14.50 2.77 -172.32 -0.48 -14.98 16 11 C -0.26 -7.29 10.03 -15.06 -0.15 -7.44 16 12 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 13 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 14 N -0.91 -28.15 13.97 55.49 0.78 -27.37 16 15 Si 0.88 22.80 24.34 -169.99 -4.14 18.66 16 16 H -0.29 -7.23 6.62 56.52 0.37 -6.86 16 17 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 18 H -0.27 -6.85 6.64 56.52 0.38 -6.47 16 19 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 20 C -0.14 -2.28 5.55 -26.61 -0.15 -2.42 16 21 N -0.20 -2.81 12.04 32.85 0.40 -2.42 16 22 N -0.07 -0.89 13.78 60.35 0.83 -0.06 16 23 N -0.37 -3.39 4.03 -63.59 -0.26 -3.65 16 24 C 0.09 0.32 11.33 59.85 0.68 0.99 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.32 7.18 -51.93 -0.37 -0.06 16 27 H 0.11 1.10 6.43 -51.93 -0.33 0.77 16 28 H 0.40 5.44 8.29 -40.82 -0.34 5.10 16 29 H 0.09 1.51 7.58 -51.93 -0.39 1.11 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.83 4.50 -51.93 -0.23 1.60 16 33 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 0.12 7.16 -51.93 -0.37 -0.25 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -34.70 330.68 -4.88 -39.58 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.82 Total: 0.55 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.98 Total: 4.46 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.99 Total: -59.20 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.70 -4.88 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002517709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.893 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds