Wall clock time and date at job start Tue Mar 31 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.96318 * 2 1 4 4 C 1.33241 * 109.82852 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52394 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47278 * 89.99991 * 5 4 3 7 7 O 1.21287 * 119.99659 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00216 * 180.02562 * 8 6 5 10 10 C 1.53037 * 109.45954 * 275.02693 * 9 8 6 11 11 C 1.53192 * 109.31307 * 178.60087 * 10 9 8 12 12 N 1.46928 * 108.76490 * 54.65335 * 11 10 9 13 13 C 1.36935 * 120.62658 * 126.36162 * 12 11 10 14 14 H 1.07999 * 119.99785 * 208.01530 * 13 12 11 15 15 C 1.38810 * 120.00325 * 28.02600 * 13 12 11 16 16 N 1.31623 * 120.00095 * 17.51873 * 15 13 12 17 17 Si 1.86807 * 120.00041 * 197.52328 * 15 13 12 18 18 H 1.48492 * 109.47020 * 94.06150 * 17 15 13 19 19 H 1.48496 * 109.46752 * 214.06500 * 17 15 13 20 20 H 1.48498 * 109.46810 * 334.06377 * 17 15 13 21 21 C 1.46921 * 118.73587 * 306.38350 * 12 11 10 22 22 C 1.53037 * 109.46146 * 154.97144 * 9 8 6 23 23 N 1.30710 * 108.94802 * 0.02562 * 4 3 2 24 24 N 1.34431 * 125.96353 * 180.02562 * 2 1 3 25 25 H 0.96997 * 126.81750 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.46785 * 89.97569 * 1 2 3 27 27 H 1.08991 * 109.47248 * 209.97677 * 1 2 3 28 28 H 1.08997 * 109.47257 * 329.98416 * 1 2 3 29 29 H 1.08997 * 109.47163 * 210.00248 * 5 4 3 30 30 H 1.08998 * 109.47023 * 329.99994 * 5 4 3 31 31 H 0.96999 * 120.00063 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.45603 * 34.99666 * 9 8 6 33 33 H 1.09004 * 109.49441 * 298.56676 * 10 9 8 34 34 H 1.09007 * 109.50071 * 58.65644 * 10 9 8 35 35 H 1.09005 * 109.59630 * 294.86347 * 11 10 9 36 36 H 1.09003 * 109.70093 * 174.50621 * 11 10 9 37 37 H 0.96998 * 120.00126 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58765 * 293.82031 * 21 12 11 39 39 H 1.09002 * 109.70253 * 173.46547 * 21 12 11 40 40 H 1.09010 * 109.49420 * 301.33771 * 22 9 8 41 41 H 1.08998 * 109.50142 * 61.43210 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1320 1.9355 1.4192 7 8 4.5140 1.4470 2.3414 8 7 6.1710 2.7579 1.6649 9 6 6.5551 3.0606 3.0459 10 6 5.7031 4.2189 3.5698 11 6 6.0831 4.5096 5.0251 12 7 7.5315 4.7454 5.0973 13 6 8.0248 5.8856 5.6732 14 1 8.9757 6.2848 5.3523 15 6 7.3030 6.5283 6.6696 16 7 6.3419 5.8892 7.3023 17 14 7.6956 8.3001 7.1126 18 1 6.8072 9.2103 6.3463 19 1 7.4796 8.5061 8.5672 20 1 9.1122 8.5921 6.7762 21 6 8.4404 3.7349 4.5394 22 6 8.0338 3.4527 3.0896 23 7 3.6194 -0.6168 -0.0015 24 7 2.2965 -1.0881 -0.0005 25 1 2.0093 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5141 29 1 5.5741 1.1509 -0.5155 30 1 4.4699 2.5469 -0.5151 31 1 6.6651 3.1488 0.9273 32 1 6.3941 2.1807 3.6687 33 1 5.8825 5.1062 2.9625 34 1 4.6485 3.9481 3.5164 35 1 5.8203 3.6555 5.6492 36 1 5.5509 5.3946 5.3740 37 1 5.8372 6.3384 7.9983 38 1 8.3699 2.8175 5.1239 39 1 9.4645 4.1071 4.5657 40 1 8.6384 2.6363 2.6945 41 1 8.1910 4.3472 2.4870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002771017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:21 Heat of formation + Delta-G solvation = 62.368810 kcal Electronic energy + Delta-G solvation = -23209.160883 eV Core-core repulsion = 19740.150366 eV Total energy + Delta-G solvation = -3469.010517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.30331 -39.58574 -37.30235 -34.38467 -33.79969 -32.53982 -32.15681 -30.50440 -29.84686 -29.10551 -27.82854 -24.94946 -22.51403 -22.18553 -21.59155 -20.84725 -19.99943 -19.19649 -18.06451 -17.16081 -16.64243 -15.88014 -15.61806 -15.14197 -14.75535 -14.40276 -13.93793 -13.78464 -13.58940 -13.45735 -13.12836 -13.04307 -12.91753 -12.74952 -12.32510 -12.12290 -11.95933 -11.44985 -11.10220 -10.88461 -10.71751 -10.35314 -10.31789 -10.18648 -10.17413 -10.03259 -9.82246 -9.72123 -9.63761 -9.35223 -8.66292 -8.38619 -6.65573 -5.75321 -3.18288 1.41374 2.42855 2.62995 2.84026 3.40035 3.47016 3.47149 3.48707 3.81397 4.33221 4.52297 4.54551 4.94283 4.97117 5.04857 5.19525 5.35629 5.41890 5.45241 5.46992 5.50115 5.68244 5.87555 6.06579 6.12979 6.23298 6.28277 6.40267 6.48596 6.65678 6.69225 6.82738 6.85280 6.96200 6.99053 7.41538 7.70707 7.76455 7.82936 7.93915 8.45406 8.48485 9.24066 9.87577 10.44498 11.33168 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.002983 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.322718 B = 9384.691583 C = 9929.877511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.529 5.529 4 C 0.254 3.746 5 C -0.051 4.051 6 C 0.518 3.482 7 O -0.530 6.530 8 N -0.723 5.723 9 C 0.152 3.848 10 C -0.146 4.146 11 C 0.174 3.826 12 N -0.593 5.593 13 C -0.254 4.254 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.148 3.852 22 C -0.138 4.138 23 N -0.306 5.306 24 N -0.483 5.483 25 H 0.439 0.561 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.089 0.911 37 H 0.254 0.746 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -11.798 -18.550 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.029 4.029 5 C -0.093 4.093 6 C 0.302 3.698 7 O -0.406 6.406 8 N -0.374 5.374 9 C 0.049 3.951 10 C -0.186 4.186 11 C 0.047 3.953 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.021 3.979 22 C -0.178 4.178 23 N -0.135 5.135 24 N -0.202 5.202 25 H 0.284 0.716 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.229 0.771 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.746 -12.105 -17.712 22.809 hybrid contribution -0.019 0.410 -0.066 0.416 sum -7.764 -11.694 -17.778 22.652 Atomic orbital electron populations 1.20390 0.83644 1.05194 1.04380 1.24370 0.96615 0.82773 0.95849 1.70307 1.01293 1.29524 1.24733 1.23264 0.92658 0.89689 0.97279 1.19937 0.93658 0.98824 0.96918 1.20091 0.80528 0.79017 0.90206 1.90745 1.52290 1.51606 1.45985 1.46236 1.32850 1.48464 1.09861 1.21036 0.94737 0.98692 0.80667 1.22553 0.98295 0.96690 1.01098 1.20752 0.84629 1.00715 0.89165 1.44107 1.00611 1.19171 1.67653 1.19190 1.05695 0.99965 1.13525 0.91608 1.25065 0.99590 0.99082 0.95927 1.70049 1.24916 1.35117 1.24397 0.86274 0.77995 0.85206 0.77286 1.21476 1.21808 1.20405 1.20834 0.94403 0.92565 0.90085 1.22335 0.94048 1.00345 1.01102 1.77956 0.96697 1.12256 1.26595 1.47915 1.04274 1.09957 1.58014 0.71595 0.89056 0.89887 0.88211 0.86643 0.86093 0.77074 0.90154 0.92601 0.92840 0.96228 0.89311 0.93607 0.96265 0.92338 0.92614 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.28 3.02 8.24 -155.69 -1.28 1.73 16 3 N -0.53 -7.53 11.19 -8.16 -0.09 -7.62 16 4 C 0.25 3.64 6.63 -156.85 -1.04 2.60 16 5 C -0.05 -0.59 6.33 -29.03 -0.18 -0.77 16 6 C 0.52 8.05 7.79 -10.99 -0.09 7.96 16 7 O -0.53 -10.89 15.70 5.55 0.09 -10.81 16 8 N -0.72 -10.23 5.08 -53.77 -0.27 -10.50 16 9 C 0.15 2.71 2.42 -67.89 -0.16 2.55 16 10 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 11 C 0.17 4.33 5.31 -3.71 -0.02 4.31 16 12 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 13 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 14 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 16 N -0.90 -26.67 11.22 55.49 0.62 -26.05 16 17 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.15 3.10 6.51 -3.71 -0.02 3.07 16 22 C -0.14 -2.32 5.55 -26.61 -0.15 -2.46 16 23 N -0.31 -4.30 12.80 32.42 0.41 -3.88 16 24 N -0.48 -5.00 7.45 32.62 0.24 -4.76 16 25 H 0.44 2.73 8.96 -182.34 -1.63 1.09 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 32 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 40 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -37.38 341.65 -9.65 -47.03 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.31 Total: 1.53 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -2.95 Total: 8.61 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.40 Total: -68.34 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.38 -9.65 -47.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002771017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.394 kcal (2) G-P(sol) polarization free energy of solvation -37.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds