Wall clock time and date at job start Tue Mar 31 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36596 * 126.58091 * 2 1 4 4 C 1.47522 * 125.76956 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00280 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99953 * 180.27423 * 4 3 2 7 7 C 1.46496 * 120.00043 * 179.72242 * 6 4 3 8 8 H 1.09009 * 109.49798 * 35.00218 * 7 6 4 9 9 C 1.53047 * 109.49894 * 155.06283 * 7 6 4 10 10 C 1.53041 * 109.54060 * 181.31576 * 9 7 6 11 11 C 1.53192 * 109.31255 * 298.64074 * 10 9 7 12 12 N 1.46924 * 108.78026 * 54.63277 * 11 10 9 13 13 C 1.36933 * 120.63260 * 126.38940 * 12 11 10 14 14 H 1.08000 * 119.99731 * 332.60285 * 13 12 11 15 15 C 1.38808 * 120.00033 * 152.60458 * 13 12 11 16 16 N 1.31621 * 120.00114 * 159.36920 * 15 13 12 17 17 Si 1.86799 * 120.00158 * 339.36885 * 15 13 12 18 18 H 1.48499 * 109.47008 * 92.91829 * 17 15 13 19 19 H 1.48497 * 109.47414 * 212.91968 * 17 15 13 20 20 H 1.48504 * 109.47136 * 332.92366 * 17 15 13 21 21 C 1.46935 * 118.76161 * 306.41371 * 12 11 10 22 22 N 1.34401 * 108.45819 * 180.24055 * 3 2 1 23 23 N 1.28758 * 109.52268 * 359.55408 * 22 3 2 24 24 N 1.34810 * 126.57831 * 179.97438 * 2 1 3 25 25 C 1.46496 * 126.59685 * 0.02562 * 24 2 1 26 26 H 1.08998 * 109.47223 * 89.99509 * 1 2 3 27 27 H 1.08999 * 109.46935 * 210.00342 * 1 2 3 28 28 H 1.09005 * 109.46869 * 329.99996 * 1 2 3 29 29 H 0.96998 * 119.99690 * 359.72221 * 6 4 3 30 30 H 1.08994 * 109.46035 * 301.34055 * 9 7 6 31 31 H 1.09002 * 109.45271 * 61.29599 * 9 7 6 32 32 H 1.09000 * 109.49259 * 58.58679 * 10 9 7 33 33 H 1.08996 * 109.49868 * 178.64860 * 10 9 7 34 34 H 1.08999 * 109.58674 * 174.42254 * 11 10 9 35 35 H 1.09003 * 109.58404 * 294.70113 * 11 10 9 36 36 H 0.97001 * 120.00106 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.56191 * 293.78102 * 21 12 11 38 38 H 1.09000 * 109.61542 * 173.35525 * 21 12 11 39 39 H 1.08999 * 109.47327 * 89.99342 * 25 24 2 40 40 H 1.08998 * 109.47213 * 209.99829 * 25 24 2 41 41 H 1.08998 * 109.47022 * 329.99908 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0006 6 7 2.7818 3.4987 -0.0061 7 6 2.3376 4.8947 -0.0127 8 1 1.4256 4.9892 0.5768 9 6 3.4297 5.7812 0.5904 10 6 2.9536 7.2354 0.6141 11 6 2.6870 7.7046 -0.8197 12 7 1.7463 6.7720 -1.4553 13 6 0.5954 7.2309 -2.0382 14 1 0.1385 8.1438 -1.6857 15 6 0.0161 6.5229 -3.0822 16 7 -1.2545 6.7035 -3.3746 17 14 1.0396 5.3138 -4.0721 18 1 0.9043 3.9556 -3.4871 19 1 0.5628 5.2968 -5.4784 20 1 2.4653 5.7278 -4.0377 21 6 2.0633 5.3372 -1.4535 22 7 3.5984 0.6788 -0.0054 23 7 3.6299 -0.6083 0.0008 24 7 2.3104 -1.0826 0.0005 25 6 1.8864 -2.4848 0.0006 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 3.7293 3.2912 -0.0056 30 1 3.6437 5.4525 1.6074 31 1 4.3340 5.7048 -0.0134 32 1 2.0356 7.3082 1.1973 33 1 3.7222 7.8626 1.0657 34 1 2.2543 8.7049 -0.8023 35 1 3.6226 7.7209 -1.3787 36 1 -1.6594 6.2084 -4.1039 37 1 2.9473 5.1580 -2.0654 38 1 1.2193 4.7755 -1.8537 39 1 1.7815 -2.8328 -1.0270 40 1 2.6329 -3.0901 0.5148 41 1 0.9292 -2.5749 0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006986890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:26 Heat of formation + Delta-G solvation = 83.608286 kcal Electronic energy + Delta-G solvation = -24149.874910 eV Core-core repulsion = 20681.785406 eV Total energy + Delta-G solvation = -3468.089504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34469 -39.39055 -37.48152 -35.15166 -34.19482 -32.64048 -32.40117 -30.65257 -29.58331 -27.89250 -27.62721 -25.23399 -23.82286 -22.59846 -21.81791 -20.95189 -20.23029 -19.50636 -17.88170 -16.79173 -16.54953 -16.16695 -15.64111 -15.23590 -14.55491 -14.29790 -14.19077 -14.00615 -13.77583 -13.52311 -13.45806 -13.19474 -13.06833 -12.72998 -12.68567 -12.29338 -12.14472 -12.02595 -11.53417 -11.29145 -11.03970 -10.70328 -10.54837 -10.36985 -10.19309 -10.14378 -9.71320 -9.70595 -9.40262 -9.21765 -8.79145 -8.43437 -6.90820 -5.88319 -3.24005 1.00940 1.72231 1.85975 3.34558 3.43235 3.49816 3.53966 3.56898 4.10072 4.14950 4.46470 4.60285 4.61271 4.68924 4.88078 5.06565 5.13528 5.24693 5.32844 5.33862 5.52215 5.54541 5.56027 5.66436 5.87309 5.88401 6.03832 6.11088 6.25478 6.28330 6.32841 6.51105 6.62735 6.69316 6.71001 6.86228 7.00645 7.68037 7.94360 8.02859 8.39748 8.47960 9.00207 9.79262 10.15699 11.27544 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005027 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.274479 B = 5568.727058 C = 6464.460597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.123 3.877 3 C -0.101 4.101 4 C 0.599 3.401 5 O -0.525 6.525 6 N -0.710 5.710 7 C 0.127 3.873 8 H 0.094 0.906 9 C -0.117 4.117 10 C -0.132 4.132 11 C 0.145 3.855 12 N -0.602 5.602 13 C -0.262 4.262 14 H 0.087 0.913 15 C 0.029 3.971 16 N -0.905 5.905 17 Si 0.878 3.122 18 H -0.287 1.287 19 H -0.304 1.304 20 H -0.272 1.272 21 C 0.120 3.880 22 N -0.203 5.203 23 N -0.074 5.074 24 N -0.368 5.368 25 C 0.088 3.912 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.402 0.598 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.025 0.975 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.451 -16.282 9.446 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.014 4.014 3 C -0.241 4.241 4 C 0.382 3.618 5 O -0.400 6.400 6 N -0.360 5.360 7 C 0.021 3.979 8 H 0.112 0.888 9 C -0.155 4.155 10 C -0.171 4.171 11 C 0.019 3.981 12 N -0.325 5.325 13 C -0.390 4.390 14 H 0.105 0.895 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.709 3.291 18 H -0.215 1.215 19 H -0.232 1.232 20 H -0.197 1.197 21 C -0.007 4.007 22 N -0.076 5.076 23 N -0.053 5.053 24 N -0.154 5.154 25 C -0.053 4.053 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.133 0.867 29 H 0.236 0.764 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.915 -16.514 9.321 20.549 hybrid contribution 0.046 -0.975 -0.725 1.215 sum 7.961 -17.489 8.596 21.050 Atomic orbital electron populations 1.20759 0.84481 1.05395 1.04954 1.21965 0.96349 0.86272 0.96827 1.21359 0.88876 0.95750 1.18092 1.16734 0.85888 0.82355 0.76838 1.90830 1.15686 1.83276 1.50212 1.45905 1.09682 1.06280 1.74107 1.21809 0.98261 0.77708 1.00085 0.88819 1.21687 0.97808 0.96001 1.00025 1.21996 1.00802 0.94521 0.99815 1.20984 0.92664 0.93907 0.90527 1.44290 1.22549 0.99710 1.65981 1.18899 0.98212 1.10482 1.11409 0.89536 1.25232 0.95846 0.98280 0.97645 1.69836 1.10031 1.43660 1.31256 0.87003 0.81418 0.81324 0.79368 1.21466 1.23193 1.19661 1.21701 0.99442 0.86358 0.93179 1.74559 1.19218 1.04104 1.09754 1.81941 0.96030 1.03517 1.23857 1.50237 1.06485 1.07706 1.50971 1.22140 1.02356 0.76116 1.04681 0.88801 0.90771 0.86662 0.76352 0.92331 0.91986 0.91624 0.92127 0.91666 0.95889 0.92819 0.95759 0.90263 0.89305 0.88170 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.57 36.01 0.34 -0.65 16 2 C 0.12 1.59 7.02 -81.87 -0.57 1.01 16 3 C -0.10 -1.60 6.99 -83.55 -0.58 -2.19 16 4 C 0.60 10.95 7.78 -12.47 -0.10 10.85 16 5 O -0.52 -11.07 14.38 5.28 0.08 -10.99 16 6 N -0.71 -12.20 5.08 -54.73 -0.28 -12.48 16 7 C 0.13 2.42 2.60 -67.81 -0.18 2.24 16 8 H 0.09 1.99 7.58 -51.92 -0.39 1.60 16 9 C -0.12 -1.82 5.36 -26.69 -0.14 -1.96 16 10 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 11 C 0.14 2.86 6.52 -3.71 -0.02 2.83 16 12 N -0.60 -14.78 2.77 -172.32 -0.48 -15.26 16 13 C -0.26 -7.56 10.03 -15.06 -0.15 -7.71 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.03 0.88 5.23 -17.43 -0.09 0.79 16 16 N -0.91 -28.65 13.97 55.49 0.78 -27.87 16 17 Si 0.88 23.70 24.34 -169.99 -4.14 19.57 16 18 H -0.29 -7.77 6.62 56.52 0.37 -7.39 16 19 H -0.30 -8.22 7.11 56.52 0.40 -7.81 16 20 H -0.27 -7.16 6.64 56.52 0.38 -6.79 16 21 C 0.12 2.80 3.78 -3.71 -0.01 2.78 16 22 N -0.20 -3.17 12.04 32.85 0.40 -2.78 16 23 N -0.07 -1.04 13.78 60.35 0.83 -0.21 16 24 N -0.37 -4.06 4.03 -63.59 -0.26 -4.32 16 25 C 0.09 0.46 11.33 59.84 0.68 1.14 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.47 7.18 -51.93 -0.37 0.10 16 28 H 0.11 1.44 6.43 -51.93 -0.33 1.11 16 29 H 0.40 5.98 8.29 -40.82 -0.34 5.64 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 37 H 0.02 0.57 7.07 -51.93 -0.37 0.20 16 38 H 0.08 2.12 4.50 -51.93 -0.23 1.89 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.27 7.16 -51.93 -0.37 -0.10 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -36.23 330.69 -4.90 -41.13 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.82 Total: 1.38 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.99 Total: 6.85 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.99 Total: -62.92 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.14 Total: 19.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.23 -4.90 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006986890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.734 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds