Wall clock time and date at job start Tue Mar 31 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36596 * 126.58091 * 2 1 4 4 C 1.47522 * 125.76956 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00280 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99953 * 180.27423 * 4 3 2 7 7 C 1.46496 * 120.00043 * 179.72242 * 6 4 3 8 8 H 1.09009 * 109.49798 * 35.00218 * 7 6 4 9 9 C 1.53047 * 109.49894 * 155.06283 * 7 6 4 10 10 C 1.53041 * 109.54060 * 181.31576 * 9 7 6 11 11 C 1.53192 * 109.31255 * 298.64074 * 10 9 7 12 12 N 1.46924 * 108.78026 * 54.63277 * 11 10 9 13 13 C 1.36933 * 120.63260 * 126.38940 * 12 11 10 14 14 H 1.08000 * 119.99731 * 332.60285 * 13 12 11 15 15 C 1.38808 * 120.00033 * 152.60458 * 13 12 11 16 16 N 1.31621 * 120.00114 * 159.36920 * 15 13 12 17 17 Si 1.86799 * 120.00158 * 339.36885 * 15 13 12 18 18 H 1.48499 * 109.47008 * 92.91829 * 17 15 13 19 19 H 1.48497 * 109.47414 * 212.91968 * 17 15 13 20 20 H 1.48504 * 109.47136 * 332.92366 * 17 15 13 21 21 C 1.46935 * 118.76161 * 306.41371 * 12 11 10 22 22 N 1.34401 * 108.45819 * 180.24055 * 3 2 1 23 23 N 1.28758 * 109.52268 * 359.55408 * 22 3 2 24 24 N 1.34810 * 126.57831 * 179.97438 * 2 1 3 25 25 C 1.46496 * 126.59685 * 0.02562 * 24 2 1 26 26 H 1.08998 * 109.47223 * 89.99509 * 1 2 3 27 27 H 1.08999 * 109.46935 * 210.00342 * 1 2 3 28 28 H 1.09005 * 109.46869 * 329.99996 * 1 2 3 29 29 H 0.96998 * 119.99690 * 359.72221 * 6 4 3 30 30 H 1.08994 * 109.46035 * 301.34055 * 9 7 6 31 31 H 1.09002 * 109.45271 * 61.29599 * 9 7 6 32 32 H 1.09000 * 109.49259 * 58.58679 * 10 9 7 33 33 H 1.08996 * 109.49868 * 178.64860 * 10 9 7 34 34 H 1.08999 * 109.58674 * 174.42254 * 11 10 9 35 35 H 1.09003 * 109.58404 * 294.70113 * 11 10 9 36 36 H 0.97001 * 120.00106 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.56191 * 293.78102 * 21 12 11 38 38 H 1.09000 * 109.61542 * 173.35525 * 21 12 11 39 39 H 1.08999 * 109.47327 * 89.99342 * 25 24 2 40 40 H 1.08998 * 109.47213 * 209.99829 * 25 24 2 41 41 H 1.08998 * 109.47022 * 329.99908 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0006 6 7 2.7818 3.4987 -0.0061 7 6 2.3376 4.8947 -0.0127 8 1 1.4256 4.9892 0.5768 9 6 3.4297 5.7812 0.5904 10 6 2.9536 7.2354 0.6141 11 6 2.6870 7.7046 -0.8197 12 7 1.7463 6.7720 -1.4553 13 6 0.5954 7.2309 -2.0382 14 1 0.1385 8.1438 -1.6857 15 6 0.0161 6.5229 -3.0822 16 7 -1.2545 6.7035 -3.3746 17 14 1.0396 5.3138 -4.0721 18 1 0.9043 3.9556 -3.4871 19 1 0.5628 5.2968 -5.4784 20 1 2.4653 5.7278 -4.0377 21 6 2.0633 5.3372 -1.4535 22 7 3.5984 0.6788 -0.0054 23 7 3.6299 -0.6083 0.0008 24 7 2.3104 -1.0826 0.0005 25 6 1.8864 -2.4848 0.0006 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 3.7293 3.2912 -0.0056 30 1 3.6437 5.4525 1.6074 31 1 4.3340 5.7048 -0.0134 32 1 2.0356 7.3082 1.1973 33 1 3.7222 7.8626 1.0657 34 1 2.2543 8.7049 -0.8023 35 1 3.6226 7.7209 -1.3787 36 1 -1.6594 6.2084 -4.1039 37 1 2.9473 5.1580 -2.0654 38 1 1.2193 4.7755 -1.8537 39 1 1.7815 -2.8328 -1.0270 40 1 2.6329 -3.0901 0.5148 41 1 0.9292 -2.5749 0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006986890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:26 Heat of formation + Delta-G solvation = 54.668205 kcal Electronic energy + Delta-G solvation = -24151.129846 eV Core-core repulsion = 20681.785406 eV Total energy + Delta-G solvation = -3469.344440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.36836 -40.85513 -39.09067 -36.17911 -35.73220 -34.45088 -33.38184 -32.58457 -31.00160 -28.90333 -28.39069 -27.19743 -25.14531 -24.20298 -23.27158 -21.97956 -21.63327 -20.99821 -19.10616 -18.80213 -17.65279 -17.50210 -16.92538 -16.83566 -16.11828 -15.73775 -15.45493 -15.34925 -15.30776 -14.90050 -14.48072 -14.33949 -14.15448 -14.05755 -14.02778 -13.84431 -13.42742 -13.29278 -13.04298 -12.65957 -12.55476 -12.45884 -12.27511 -11.80085 -11.71179 -11.67142 -11.35276 -11.21348 -11.11028 -10.80644 -10.38757 -10.08339 -8.93399 -8.20518 -5.50623 0.03349 0.52411 1.06134 1.25484 1.30208 1.39556 2.01611 2.17303 2.37471 3.01118 3.11667 3.33378 3.45172 3.55525 3.69902 3.81990 4.04017 4.16015 4.26982 4.33985 4.35010 4.41326 4.53399 4.58422 4.62882 4.67008 4.79840 4.80103 4.88464 4.98872 5.05229 5.10571 5.16090 5.22599 5.37473 5.46698 5.55586 5.85450 6.10628 6.39092 6.82725 6.88852 7.12596 7.60013 8.00382 8.99395 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005027 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.274479 B = 5568.727058 C = 6464.460597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.130 3.870 3 C -0.132 4.132 4 C 0.595 3.405 5 O -0.563 6.563 6 N -0.702 5.702 7 C 0.137 3.863 8 H 0.066 0.934 9 C -0.109 4.109 10 C -0.122 4.122 11 C 0.136 3.864 12 N -0.617 5.617 13 C -0.247 4.247 14 H 0.060 0.940 15 C -0.028 4.028 16 N -0.952 5.952 17 Si 0.939 3.061 18 H -0.295 1.295 19 H -0.305 1.305 20 H -0.259 1.259 21 C 0.121 3.879 22 N -0.218 5.218 23 N -0.087 5.087 24 N -0.351 5.351 25 C 0.072 3.928 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.415 0.585 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.710 -18.395 10.647 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.380 3.620 5 O -0.441 6.441 6 N -0.353 5.353 7 C 0.031 3.969 8 H 0.084 0.916 9 C -0.147 4.147 10 C -0.161 4.161 11 C 0.012 3.988 12 N -0.342 5.342 13 C -0.377 4.377 14 H 0.078 0.922 15 C -0.223 4.223 16 N -0.598 5.598 17 Si 0.769 3.231 18 H -0.223 1.223 19 H -0.234 1.234 20 H -0.183 1.183 21 C -0.006 4.006 22 N -0.092 5.092 23 N -0.067 5.067 24 N -0.137 5.137 25 C -0.067 4.067 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.263 -18.658 10.550 23.765 hybrid contribution -0.682 -0.390 -1.020 1.287 sum 9.581 -19.048 9.530 23.355 Atomic orbital electron populations 1.20819 0.82736 1.06404 1.05347 1.22263 0.97316 0.86034 0.95303 1.21176 0.89927 0.95153 1.20982 1.17120 0.85463 0.83572 0.75843 1.90810 1.17231 1.84109 1.51925 1.45779 1.10318 1.05423 1.73746 1.21469 0.99057 0.79450 0.96885 0.91609 1.21686 0.96705 0.94506 1.01773 1.21909 1.01702 0.95574 0.96961 1.21268 0.92032 0.92850 0.92662 1.44450 1.22402 1.01148 1.66190 1.18921 0.99190 1.09027 1.10567 0.92190 1.25798 0.96623 1.00735 0.99139 1.69948 1.11544 1.45901 1.32377 0.86023 0.80511 0.79025 0.77536 1.22281 1.23401 1.18307 1.21619 0.97776 0.85271 0.95931 1.74513 1.19249 1.04903 1.10486 1.81829 0.97809 1.02967 1.24091 1.50579 1.05106 1.09279 1.48745 1.22751 1.04343 0.72950 1.06627 0.88555 0.86158 0.89230 0.74784 0.89301 0.90046 0.92941 0.87832 0.92127 0.94062 0.93033 0.95165 0.94327 0.87492 0.86558 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.57 71.24 0.68 -1.10 16 2 C 0.13 3.15 7.02 41.72 0.29 3.45 16 3 C -0.13 -4.14 6.99 40.82 0.29 -3.86 16 4 C 0.59 21.99 7.78 86.69 0.67 22.67 16 5 O -0.56 -24.61 14.38 -4.02 -0.06 -24.67 16 6 N -0.70 -23.70 5.08 -445.32 -2.26 -25.96 16 7 C 0.14 5.15 2.60 45.07 0.12 5.27 16 8 H 0.07 2.85 7.58 -2.38 -0.02 2.83 16 9 C -0.11 -3.02 5.36 30.62 0.16 -2.86 16 10 C -0.12 -3.56 6.08 30.67 0.19 -3.37 16 11 C 0.14 5.13 6.52 86.36 0.56 5.69 16 12 N -0.62 -30.35 2.77 -699.09 -1.94 -32.29 16 13 C -0.25 -14.70 10.03 84.03 0.84 -13.86 16 14 H 0.06 3.81 8.06 -2.91 -0.02 3.78 16 15 C -0.03 -1.72 5.23 84.86 0.44 -1.28 16 16 N -0.95 -62.68 13.97 21.65 0.30 -62.38 16 17 Si 0.94 50.67 24.34 68.60 1.67 52.34 16 18 H -0.29 -16.11 6.62 99.48 0.66 -15.45 16 19 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 20 H -0.26 -13.20 6.64 99.48 0.66 -12.54 16 21 C 0.12 5.60 3.78 86.36 0.33 5.93 16 22 N -0.22 -6.60 12.04 -50.00 -0.60 -7.20 16 23 N -0.09 -2.30 13.78 37.02 0.51 -1.79 16 24 N -0.35 -6.85 4.03 -355.11 -1.43 -8.29 16 25 C 0.07 0.46 11.33 127.77 1.45 1.91 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.12 1.08 7.18 -2.39 -0.02 1.06 16 28 H 0.09 2.24 6.43 -2.38 -0.02 2.23 16 29 H 0.42 11.73 8.29 -92.71 -0.77 10.96 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 37 H 0.03 1.37 7.07 -2.39 -0.02 1.35 16 38 H 0.04 2.11 4.50 -2.39 -0.01 2.10 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.13 0.08 7.16 -2.39 -0.02 0.06 16 Total: -1.00 -83.59 330.69 2.41 -81.17 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.19 Total: 10.49 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 6.03 Total: 18.59 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -5.42 Total: -137.91 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.67 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.67 Total: 52.34 kcal Total: -83.59 2.41 -81.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006986890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.842 kcal (2) G-P(sol) polarization free energy of solvation -83.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds