Wall clock time and date at job start Tue Mar 31 2020 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30825 * 125.96528 * 2 1 4 4 C 1.33241 * 109.83386 * 180.12428 * 3 2 1 5 5 C 1.50699 * 125.52957 * 179.85731 * 4 3 2 6 6 C 1.50705 * 109.46679 * 269.71481 * 5 4 3 7 7 O 1.21282 * 120.00278 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99720 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99785 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.52672 * 34.92225 * 9 8 6 11 11 C 1.53042 * 109.49765 * 155.00212 * 9 8 6 12 12 C 1.53040 * 109.54174 * 181.31850 * 11 9 8 13 13 C 1.53188 * 109.30921 * 298.63667 * 12 11 9 14 14 N 1.46926 * 108.77817 * 54.63345 * 13 12 11 15 15 C 1.36932 * 120.62923 * 126.37040 * 14 13 12 16 16 H 1.08003 * 120.00058 * 207.50814 * 15 14 13 17 17 C 1.38813 * 120.00216 * 27.51552 * 15 14 13 18 18 N 1.31614 * 120.00042 * 17.83429 * 17 15 14 19 19 Si 1.86803 * 119.99907 * 197.83738 * 17 15 14 20 20 H 1.48501 * 109.47098 * 265.35618 * 19 17 15 21 21 H 1.48493 * 109.47161 * 145.35673 * 19 17 15 22 22 H 1.48505 * 109.47060 * 25.35372 * 19 17 15 23 23 C 1.46930 * 118.73807 * 306.63893 * 14 13 12 24 24 N 1.30712 * 108.94153 * 359.59028 * 4 3 2 25 25 N 1.34436 * 125.95972 * 179.66867 * 2 1 3 26 26 H 0.97000 * 126.81994 * 0.07669 * 25 2 1 27 27 H 1.09004 * 109.47211 * 270.33158 * 1 2 3 28 28 H 1.08997 * 109.47309 * 30.32846 * 1 2 3 29 29 H 1.09003 * 109.47265 * 150.33099 * 1 2 3 30 30 H 1.08998 * 109.46951 * 149.71838 * 5 4 3 31 31 H 1.09004 * 109.47073 * 29.71266 * 5 4 3 32 32 H 0.97000 * 120.00234 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.45919 * 61.29442 * 11 9 8 34 34 H 1.09004 * 109.46121 * 301.34047 * 11 9 8 35 35 H 1.09002 * 109.49979 * 178.68243 * 12 11 9 36 36 H 1.08998 * 109.49588 * 58.58319 * 12 11 9 37 37 H 1.09003 * 109.58681 * 294.84505 * 13 12 11 38 38 H 1.09001 * 109.70413 * 174.49134 * 13 12 11 39 39 H 0.97004 * 120.00090 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.58323 * 173.14513 * 23 14 13 41 41 H 1.08997 * 109.58717 * 293.57457 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0027 5 6 4.7373 1.6235 -0.0067 6 6 5.1321 1.9279 -1.4288 7 8 4.5142 1.4347 -2.3486 8 7 6.1713 2.7490 -1.6786 9 6 6.5555 3.0445 -3.0611 10 1 5.6635 3.0846 -3.6865 11 6 7.2771 4.3931 -3.1136 12 6 7.6498 4.7182 -4.5619 13 6 8.5994 3.6406 -5.0947 14 7 7.9707 2.3249 -4.9141 15 6 7.8326 1.4666 -5.9720 16 1 7.0292 0.7449 -5.9806 17 6 8.7254 1.5239 -7.0335 18 7 9.8839 2.1310 -6.8869 19 14 8.2823 0.7395 -8.6699 20 1 8.8403 -0.6355 -8.7269 21 1 8.8497 1.5502 -9.7771 22 1 6.8047 0.6802 -8.8065 23 6 7.4876 1.9502 -3.5780 24 7 3.6194 -0.6169 0.0043 25 7 2.2964 -1.0881 0.0063 26 1 2.0092 -2.0146 0.0106 27 1 -0.3634 0.0059 1.0277 28 1 -0.3634 0.8870 -0.5189 29 1 -0.3634 -0.8930 -0.5087 30 1 5.5740 1.1533 0.5100 31 1 4.4698 2.5495 0.5023 32 1 6.6652 3.1438 -0.9430 33 1 8.1820 4.3445 -2.5079 34 1 6.6210 5.1715 -2.7241 35 1 8.1429 5.6895 -4.6015 36 1 6.7476 4.7424 -5.1731 37 1 9.5385 3.6757 -4.5425 38 1 8.7918 3.8113 -6.1539 39 1 10.5076 2.1713 -7.6287 40 1 6.9443 1.0071 -3.6372 41 1 8.3342 1.8448 -2.8997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007309049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:49 Heat of formation + Delta-G solvation = 63.328801 kcal Electronic energy + Delta-G solvation = -23360.844388 eV Core-core repulsion = 19891.875500 eV Total energy + Delta-G solvation = -3468.968889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26045 -39.53325 -37.31254 -34.26279 -33.75714 -32.50527 -32.38582 -30.46636 -30.28102 -28.48729 -27.57043 -25.23884 -22.67878 -22.05802 -21.55558 -20.79523 -19.94929 -19.20863 -18.02283 -16.98107 -16.73007 -15.68341 -15.59150 -15.22309 -14.68435 -14.39728 -13.95716 -13.82428 -13.60094 -13.43883 -13.17531 -13.01417 -12.97044 -12.39341 -12.35546 -12.11383 -11.93163 -11.76900 -11.04574 -10.84966 -10.73119 -10.28055 -10.21819 -10.19685 -10.14142 -9.89907 -9.85158 -9.66489 -9.57639 -9.34723 -8.76649 -8.35182 -6.62865 -5.74304 -3.15093 1.46380 2.47679 2.66381 2.89766 3.42198 3.48009 3.49692 3.54712 3.83828 4.37679 4.56278 4.57566 4.97981 5.00166 5.06512 5.24146 5.34798 5.43189 5.44150 5.49424 5.59303 5.67073 5.77853 6.10992 6.13507 6.21879 6.27832 6.30535 6.57720 6.65893 6.73393 6.74847 6.89554 6.89970 7.05898 7.40133 7.68744 7.79587 7.87674 7.97713 8.47524 8.53779 9.26853 9.89516 10.45014 11.34645 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.003524 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.719498 B = 7943.146786 C = 8880.478498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.281 3.719 3 N -0.531 5.531 4 C 0.253 3.747 5 C -0.050 4.050 6 C 0.518 3.482 7 O -0.527 6.527 8 N -0.721 5.721 9 C 0.127 3.873 10 H 0.085 0.915 11 C -0.114 4.114 12 C -0.140 4.140 13 C 0.167 3.833 14 N -0.588 5.588 15 C -0.249 4.249 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.142 3.858 24 N -0.302 5.302 25 N -0.482 5.482 26 H 0.439 0.561 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.396 0.604 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 0.338 17.595 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.003 3.997 3 N -0.261 5.261 4 C -0.030 4.030 5 C -0.093 4.093 6 C 0.301 3.699 7 O -0.402 6.402 8 N -0.373 5.373 9 C 0.022 3.978 10 H 0.103 0.897 11 C -0.152 4.152 12 C -0.179 4.179 13 C 0.041 3.959 14 N -0.311 5.311 15 C -0.378 4.378 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.015 3.985 24 N -0.131 5.131 25 N -0.201 5.201 26 H 0.284 0.716 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.229 0.771 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -13.916 -0.038 16.781 21.801 hybrid contribution -0.194 -0.889 -0.499 1.038 sum -14.111 -0.926 16.282 21.566 Atomic orbital electron populations 1.20378 0.83709 1.05118 1.04337 1.24341 0.96571 0.82835 0.96001 1.70276 1.01301 1.29566 1.24921 1.23261 0.92601 0.89740 0.97400 1.19927 0.93732 0.98749 0.96843 1.20084 0.80402 0.79173 0.90218 1.90763 1.52872 1.50400 1.46163 1.46046 1.32701 1.48926 1.09596 1.21640 0.99248 0.96284 0.80656 0.89697 1.21673 0.99371 0.95339 0.98837 1.22176 1.01386 0.99800 0.94582 1.20845 0.91253 0.82178 1.01628 1.43991 1.69382 1.14241 1.03461 1.19224 1.07857 1.14226 0.96523 0.91651 1.24993 0.94664 1.00183 0.99823 1.70047 1.06564 1.47520 1.30752 0.86290 0.78123 0.78645 0.83850 1.21485 1.21530 1.20372 1.21098 0.94276 0.95312 0.87846 1.78000 0.96594 1.12253 1.26235 1.47926 1.04294 1.09976 1.57887 0.71561 0.89097 0.88314 0.89892 0.86519 0.86196 0.77094 0.92202 0.93021 0.92709 0.92449 0.96311 0.89278 0.93719 0.92506 0.96492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.51 36.00 0.38 -0.05 16 2 C 0.28 3.08 8.24 -155.70 -1.28 1.79 16 3 N -0.53 -7.59 11.19 -8.16 -0.09 -7.68 16 4 C 0.25 3.73 6.63 -156.85 -1.04 2.69 16 5 C -0.05 -0.60 6.33 -29.03 -0.18 -0.78 16 6 C 0.52 8.33 7.79 -10.98 -0.09 8.24 16 7 O -0.53 -11.27 15.70 5.56 0.09 -11.18 16 8 N -0.72 -10.47 5.08 -53.90 -0.27 -10.75 16 9 C 0.13 2.35 2.59 -68.03 -0.18 2.17 16 10 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 11 C -0.11 -1.86 5.36 -26.69 -0.14 -2.00 16 12 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 13 C 0.17 4.01 5.32 -3.71 -0.02 3.99 16 14 N -0.59 -15.38 3.00 -172.58 -0.52 -15.89 16 15 C -0.25 -7.20 9.58 -15.06 -0.14 -7.35 16 16 H 0.07 1.92 7.89 -52.48 -0.41 1.51 16 17 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 18 N -0.90 -26.75 11.20 55.49 0.62 -26.13 16 19 Si 0.90 22.52 29.59 -169.99 -5.03 17.49 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 C 0.14 3.21 6.06 -3.93 -0.02 3.19 16 24 N -0.30 -4.49 12.80 32.42 0.41 -4.08 16 25 N -0.48 -5.30 7.45 32.62 0.24 -5.05 16 26 H 0.44 3.05 8.96 -182.34 -1.63 1.41 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 2.40 6.03 -51.93 -0.31 2.09 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -38.12 341.58 -9.67 -47.79 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.30 Total: 1.30 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -2.97 Total: 9.04 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: 0.40 Total: -69.58 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.12 -9.67 -47.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007309049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.119 kcal (2) G-P(sol) polarization free energy of solvation -38.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds