Wall clock time and date at job start Tue Mar 31 2020 03:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30827 * 125.96047 * 2 1 4 4 C 1.33246 * 109.82626 * 180.19362 * 3 2 1 5 5 C 1.50703 * 125.52244 * 179.85425 * 4 3 2 6 6 C 1.50693 * 109.47139 * 269.71829 * 5 4 3 7 7 O 1.21282 * 120.00357 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00309 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00294 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.52239 * 325.07449 * 9 8 6 11 11 C 1.53045 * 109.49646 * 204.99917 * 9 8 6 12 12 C 1.53044 * 109.53662 * 178.68347 * 11 9 8 13 13 C 1.53184 * 109.31388 * 61.36520 * 12 11 9 14 14 N 1.46929 * 108.77303 * 305.36090 * 13 12 11 15 15 C 1.36940 * 120.63423 * 233.58564 * 14 13 12 16 16 H 1.07997 * 120.00187 * 152.18020 * 15 14 13 17 17 C 1.38818 * 119.99766 * 332.18217 * 15 14 13 18 18 N 1.31617 * 119.99874 * 143.80934 * 17 15 14 19 19 Si 1.86805 * 119.99874 * 323.81112 * 17 15 14 20 20 H 1.48498 * 109.47022 * 269.99832 * 19 17 15 21 21 H 1.48505 * 109.46947 * 150.00074 * 19 17 15 22 22 H 1.48496 * 109.47076 * 29.99912 * 19 17 15 23 23 C 1.46921 * 118.73900 * 53.86921 * 14 13 12 24 24 N 1.30708 * 108.94769 * 359.59018 * 4 3 2 25 25 N 1.34420 * 125.95836 * 179.75170 * 2 1 3 26 26 H 0.97006 * 126.82612 * 0.02562 * 25 2 1 27 27 H 1.09011 * 109.46992 * 270.24801 * 1 2 3 28 28 H 1.09001 * 109.47208 * 30.24117 * 1 2 3 29 29 H 1.08991 * 109.47331 * 150.24903 * 1 2 3 30 30 H 1.09002 * 109.46634 * 149.71918 * 5 4 3 31 31 H 1.08994 * 109.47369 * 29.72207 * 5 4 3 32 32 H 0.96999 * 119.99758 * 359.97438 * 8 6 5 33 33 H 1.09002 * 109.46326 * 58.66097 * 11 9 8 34 34 H 1.09003 * 109.44861 * 298.69151 * 11 9 8 35 35 H 1.09005 * 109.49404 * 301.40951 * 12 11 9 36 36 H 1.09003 * 109.52238 * 181.33069 * 12 11 9 37 37 H 1.09001 * 109.58584 * 185.57965 * 13 12 11 38 38 H 1.08992 * 109.59168 * 65.15011 * 13 12 11 39 39 H 0.96997 * 119.99974 * 354.93687 * 18 17 15 40 40 H 1.08998 * 109.58992 * 65.91794 * 23 14 13 41 41 H 1.08994 * 109.59080 * 186.35128 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0042 5 6 4.7372 1.6236 -0.0087 6 6 5.1306 1.9291 -1.4310 7 8 4.5119 1.4366 -2.3505 8 7 6.1701 2.7497 -1.6813 9 6 6.5522 3.0471 -3.0639 10 1 6.3885 2.1661 -3.6845 11 6 8.0310 3.4384 -3.1122 12 6 8.4394 3.7175 -4.5605 13 6 7.6120 4.8865 -5.1040 14 7 6.1861 4.5787 -4.9278 15 6 5.3234 4.6365 -5.9897 16 1 4.4387 4.0171 -6.0011 17 6 5.5861 5.4910 -7.0517 18 7 5.2869 5.1254 -8.2801 19 14 6.3643 7.1599 -6.7371 20 1 5.2981 8.1688 -6.5125 21 1 7.1801 7.5553 -7.9134 22 1 7.2334 7.0822 -5.5355 23 6 5.7023 4.2140 -3.5894 24 7 3.6194 -0.6168 0.0018 25 7 2.2963 -1.0880 0.0047 26 1 2.0092 -2.0146 0.0084 27 1 -0.3633 0.0044 1.0278 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5099 30 1 5.5745 1.1531 0.5068 31 1 4.4703 2.5492 0.5012 32 1 6.6648 3.1439 -0.9459 33 1 8.6356 2.6230 -2.7151 34 1 8.1893 4.3339 -2.5113 35 1 8.2580 2.8302 -5.1671 36 1 9.4984 3.9732 -4.5975 37 1 7.8276 5.0254 -6.1634 38 1 7.8600 5.7956 -4.5562 39 1 4.9514 4.2317 -8.4520 40 1 5.7978 5.0693 -2.9206 41 1 4.6576 3.9090 -3.6490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007309051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:53 Heat of formation + Delta-G solvation = 67.495900 kcal Electronic energy + Delta-G solvation = -23437.258175 eV Core-core repulsion = 19968.469985 eV Total energy + Delta-G solvation = -3468.788190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28543 -39.61052 -37.51042 -34.37230 -33.78890 -32.54986 -32.50337 -30.71678 -30.46817 -28.73390 -27.68759 -24.94291 -22.96731 -21.80253 -21.59042 -20.90008 -20.01263 -19.46986 -18.04830 -17.23580 -17.05105 -15.92782 -15.64225 -15.27282 -14.74940 -14.50858 -14.04031 -13.83788 -13.65504 -13.56595 -13.38322 -13.08958 -13.02486 -12.72380 -12.33747 -12.17240 -11.98122 -11.95648 -11.50145 -10.98692 -10.58278 -10.56696 -10.29646 -10.15570 -10.09095 -9.92099 -9.74393 -9.55406 -9.44688 -9.19086 -8.86328 -8.17177 -6.92706 -6.29646 -3.17553 1.43156 2.44514 2.63950 2.83432 3.42851 3.55344 3.61910 3.75978 3.81781 4.34430 4.56537 4.71530 4.89930 4.98560 5.07231 5.08509 5.18583 5.26904 5.36491 5.44141 5.50028 5.51955 5.59237 5.92007 6.02544 6.08070 6.12104 6.25306 6.33545 6.39512 6.52595 6.61220 6.72388 6.84124 6.87211 6.88859 7.05756 7.71177 7.95731 8.16823 8.44494 8.53431 9.11822 9.71716 10.30983 11.10789 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.003571 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.484588 B = 7838.995942 C = 8630.823068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.529 5.529 4 C 0.254 3.746 5 C -0.049 4.049 6 C 0.517 3.483 7 O -0.525 6.525 8 N -0.723 5.723 9 C 0.127 3.873 10 H 0.086 0.914 11 C -0.114 4.114 12 C -0.136 4.136 13 C 0.140 3.860 14 N -0.595 5.595 15 C -0.360 4.360 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.899 5.899 19 Si 1.016 2.984 20 H -0.298 1.298 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.141 3.859 24 N -0.307 5.307 25 N -0.483 5.483 26 H 0.439 0.561 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.396 0.604 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.267 0.733 40 H 0.020 0.980 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 -9.562 21.369 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.258 5.258 4 C -0.030 4.030 5 C -0.092 4.092 6 C 0.301 3.699 7 O -0.400 6.400 8 N -0.374 5.374 9 C 0.021 3.979 10 H 0.104 0.896 11 C -0.153 4.153 12 C -0.176 4.176 13 C 0.014 3.986 14 N -0.319 5.319 15 C -0.488 4.488 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.536 5.536 19 Si 0.845 3.155 20 H -0.226 1.226 21 H -0.221 1.221 22 H -0.195 1.195 23 C 0.013 3.987 24 N -0.136 5.136 25 N -0.202 5.202 26 H 0.284 0.716 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.229 0.771 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.254 -8.552 19.921 21.716 hybrid contribution -0.649 -1.844 1.077 2.232 sum -1.902 -10.396 20.998 23.508 Atomic orbital electron populations 1.20396 0.83629 1.05238 1.04374 1.24366 0.96628 0.82752 0.95767 1.70309 1.01274 1.29524 1.24710 1.23252 0.92674 0.89691 0.97334 1.19916 0.93669 0.98882 0.96727 1.20103 0.80472 0.79053 0.90275 1.90778 1.51957 1.51040 1.46188 1.46026 1.33102 1.48806 1.09479 1.21783 0.94782 1.00507 0.80779 0.89556 1.21667 0.94667 1.00554 0.98375 1.22077 0.99036 1.01438 0.94999 1.21430 0.83885 0.93814 0.99501 1.44295 1.02994 1.80454 1.04171 1.20083 1.08130 1.23023 0.97515 0.91807 1.26125 0.99215 1.02672 0.92008 1.70872 1.41331 1.22078 1.19350 0.84650 0.76717 0.78371 0.75761 1.22630 1.22082 1.19536 1.21332 0.97020 0.93060 0.87239 1.77948 0.96735 1.12239 1.26633 1.47914 1.04264 1.09961 1.58018 0.71595 0.89052 0.88172 0.89876 0.86651 0.86028 0.77080 0.92648 0.92059 0.91865 0.92328 0.91480 0.95149 0.92306 0.96228 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.28 3.18 8.24 -155.71 -1.28 1.90 16 3 N -0.53 -7.78 11.19 -8.16 -0.09 -7.87 16 4 C 0.25 3.72 6.63 -156.85 -1.04 2.68 16 5 C -0.05 -0.58 6.33 -29.04 -0.18 -0.76 16 6 C 0.52 8.18 7.79 -10.99 -0.09 8.10 16 7 O -0.52 -11.23 15.70 5.56 0.09 -11.14 16 8 N -0.72 -10.08 5.08 -53.47 -0.27 -10.35 16 9 C 0.13 2.26 2.62 -67.58 -0.18 2.08 16 10 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 11 C -0.11 -1.74 5.35 -26.69 -0.14 -1.88 16 12 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C 0.14 3.05 4.36 -3.71 -0.02 3.03 16 14 N -0.60 -14.84 2.71 -172.06 -0.47 -15.31 16 15 C -0.36 -10.56 9.70 -15.06 -0.15 -10.71 16 16 H 0.06 2.06 8.06 -52.49 -0.42 1.63 16 17 C 0.00 0.11 4.82 -17.43 -0.08 0.02 16 18 N -0.90 -28.29 13.70 55.49 0.76 -27.53 16 19 Si 1.02 25.63 27.00 -169.99 -4.59 21.04 16 20 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.27 -6.17 4.73 56.52 0.27 -5.90 16 23 C 0.14 3.05 6.12 -3.49 -0.02 3.03 16 24 N -0.31 -4.41 12.80 32.42 0.41 -4.00 16 25 N -0.48 -5.22 7.45 32.62 0.24 -4.98 16 26 H 0.44 2.92 8.96 -182.32 -1.63 1.29 16 27 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.59 5.82 -51.93 -0.30 1.29 16 38 H 0.03 0.65 6.60 -51.93 -0.34 0.30 16 39 H 0.27 8.39 8.73 -40.82 -0.36 8.04 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.50 7.93 -51.93 -0.41 1.09 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -39.26 336.82 -9.17 -48.44 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.37 Total: 1.77 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.96 Total: 4.85 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: 0.59 Total: -70.03 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.59 Total: 21.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.26 -9.17 -48.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007309051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.934 kcal (2) G-P(sol) polarization free energy of solvation -39.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds