Wall clock time and date at job start Tue Mar 31 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30827 * 125.96047 * 2 1 4 4 C 1.33246 * 109.82626 * 180.19362 * 3 2 1 5 5 C 1.50703 * 125.52244 * 179.85425 * 4 3 2 6 6 C 1.50693 * 109.47139 * 269.71829 * 5 4 3 7 7 O 1.21282 * 120.00357 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00309 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00294 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.52239 * 325.07449 * 9 8 6 11 11 C 1.53045 * 109.49646 * 204.99917 * 9 8 6 12 12 C 1.53044 * 109.53662 * 178.68347 * 11 9 8 13 13 C 1.53184 * 109.31388 * 61.36520 * 12 11 9 14 14 N 1.46929 * 108.77303 * 305.36090 * 13 12 11 15 15 C 1.36940 * 120.63423 * 233.58564 * 14 13 12 16 16 H 1.07997 * 120.00187 * 152.18020 * 15 14 13 17 17 C 1.38818 * 119.99766 * 332.18217 * 15 14 13 18 18 N 1.31617 * 119.99874 * 143.80934 * 17 15 14 19 19 Si 1.86805 * 119.99874 * 323.81112 * 17 15 14 20 20 H 1.48498 * 109.47022 * 269.99832 * 19 17 15 21 21 H 1.48505 * 109.46947 * 150.00074 * 19 17 15 22 22 H 1.48496 * 109.47076 * 29.99912 * 19 17 15 23 23 C 1.46921 * 118.73900 * 53.86921 * 14 13 12 24 24 N 1.30708 * 108.94769 * 359.59018 * 4 3 2 25 25 N 1.34420 * 125.95836 * 179.75170 * 2 1 3 26 26 H 0.97006 * 126.82612 * 0.02562 * 25 2 1 27 27 H 1.09011 * 109.46992 * 270.24801 * 1 2 3 28 28 H 1.09001 * 109.47208 * 30.24117 * 1 2 3 29 29 H 1.08991 * 109.47331 * 150.24903 * 1 2 3 30 30 H 1.09002 * 109.46634 * 149.71918 * 5 4 3 31 31 H 1.08994 * 109.47369 * 29.72207 * 5 4 3 32 32 H 0.96999 * 119.99758 * 359.97438 * 8 6 5 33 33 H 1.09002 * 109.46326 * 58.66097 * 11 9 8 34 34 H 1.09003 * 109.44861 * 298.69151 * 11 9 8 35 35 H 1.09005 * 109.49404 * 301.40951 * 12 11 9 36 36 H 1.09003 * 109.52238 * 181.33069 * 12 11 9 37 37 H 1.09001 * 109.58584 * 185.57965 * 13 12 11 38 38 H 1.08992 * 109.59168 * 65.15011 * 13 12 11 39 39 H 0.96997 * 119.99974 * 354.93687 * 18 17 15 40 40 H 1.08998 * 109.58992 * 65.91794 * 23 14 13 41 41 H 1.08994 * 109.59080 * 186.35128 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0042 5 6 4.7372 1.6236 -0.0087 6 6 5.1306 1.9291 -1.4310 7 8 4.5119 1.4366 -2.3505 8 7 6.1701 2.7497 -1.6813 9 6 6.5522 3.0471 -3.0639 10 1 6.3885 2.1661 -3.6845 11 6 8.0310 3.4384 -3.1122 12 6 8.4394 3.7175 -4.5605 13 6 7.6120 4.8865 -5.1040 14 7 6.1861 4.5787 -4.9278 15 6 5.3234 4.6365 -5.9897 16 1 4.4387 4.0171 -6.0011 17 6 5.5861 5.4910 -7.0517 18 7 5.2869 5.1254 -8.2801 19 14 6.3643 7.1599 -6.7371 20 1 5.2981 8.1688 -6.5125 21 1 7.1801 7.5553 -7.9134 22 1 7.2334 7.0822 -5.5355 23 6 5.7023 4.2140 -3.5894 24 7 3.6194 -0.6168 0.0018 25 7 2.2963 -1.0880 0.0047 26 1 2.0092 -2.0146 0.0084 27 1 -0.3633 0.0044 1.0278 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5099 30 1 5.5745 1.1531 0.5068 31 1 4.4703 2.5492 0.5012 32 1 6.6648 3.1439 -0.9459 33 1 8.6356 2.6230 -2.7151 34 1 8.1893 4.3339 -2.5113 35 1 8.2580 2.8302 -5.1671 36 1 9.4984 3.9732 -4.5975 37 1 7.8276 5.0254 -6.1634 38 1 7.8600 5.7956 -4.5562 39 1 4.9514 4.2317 -8.4520 40 1 5.7978 5.0693 -2.9206 41 1 4.6576 3.9090 -3.6490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007309051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:51 Heat of formation + Delta-G solvation = 35.832449 kcal Electronic energy + Delta-G solvation = -23438.631205 eV Core-core repulsion = 19968.469985 eV Total energy + Delta-G solvation = -3470.161220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.20733 -40.95911 -39.11196 -36.01734 -34.74278 -34.34843 -33.39662 -32.59750 -31.62480 -29.94808 -28.58745 -26.88997 -24.40297 -23.52115 -22.74453 -21.97644 -21.40670 -20.89336 -19.33914 -18.94644 -18.23294 -17.34624 -16.72593 -16.51085 -16.29572 -15.97317 -15.55426 -15.40693 -14.99078 -14.91386 -14.63098 -14.36718 -14.00269 -13.67928 -13.66026 -13.60325 -13.41750 -13.13964 -12.78850 -12.65044 -12.49744 -12.02892 -11.77407 -11.68716 -11.37783 -11.31859 -11.16239 -11.14576 -10.92890 -10.53124 -10.47239 -10.15371 -9.03168 -8.62279 -5.47734 0.51788 1.51400 1.57471 1.59351 1.62085 1.70470 1.78676 2.30293 2.59418 2.94274 2.99325 3.48211 3.50259 3.77889 3.84950 3.97723 4.05701 4.16398 4.35469 4.38684 4.40491 4.47365 4.66322 4.72350 4.72717 4.78982 4.96584 5.00447 5.04677 5.09604 5.14214 5.20188 5.24074 5.32190 5.40993 5.57196 5.80009 6.16721 6.22075 6.58371 6.89924 7.02992 7.30058 7.59733 8.10152 8.72523 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.003571 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.484588 B = 7838.995942 C = 8630.823068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.571 5.571 4 C 0.234 3.766 5 C -0.040 4.040 6 C 0.514 3.486 7 O -0.591 6.591 8 N -0.701 5.701 9 C 0.139 3.861 10 H 0.040 0.960 11 C -0.103 4.103 12 C -0.131 4.131 13 C 0.130 3.870 14 N -0.613 5.613 15 C -0.359 4.359 16 H 0.007 0.993 17 C -0.048 4.048 18 N -0.933 5.933 19 Si 1.073 2.927 20 H -0.297 1.297 21 H -0.294 1.294 22 H -0.225 1.225 23 C 0.143 3.857 24 N -0.337 5.337 25 N -0.475 5.475 26 H 0.455 0.545 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.423 0.577 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.249 0.751 40 H 0.047 0.953 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -8.490 24.931 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.302 5.302 4 C -0.050 4.050 5 C -0.082 4.082 6 C 0.300 3.700 7 O -0.470 6.470 8 N -0.354 5.354 9 C 0.033 3.967 10 H 0.058 0.942 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.006 3.994 14 N -0.338 5.338 15 C -0.488 4.488 16 H 0.025 0.975 17 C -0.245 4.245 18 N -0.573 5.573 19 Si 0.896 3.104 20 H -0.225 1.225 21 H -0.220 1.220 22 H -0.149 1.149 23 C 0.016 3.984 24 N -0.167 5.167 25 N -0.196 5.196 26 H 0.303 0.697 27 H 0.136 0.864 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.261 0.739 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.034 -7.508 23.576 24.764 hybrid contribution -1.495 -2.320 -0.033 2.760 sum -0.461 -9.828 23.543 25.516 Atomic orbital electron populations 1.20641 0.80194 1.06156 1.06338 1.25232 0.98339 0.82106 0.93752 1.70306 1.01896 1.31404 1.26566 1.23782 0.93548 0.90209 0.97430 1.20040 0.94181 1.00151 0.93785 1.20901 0.79653 0.77986 0.91447 1.90760 1.54133 1.53550 1.48596 1.45728 1.32772 1.48196 1.08726 1.21321 0.96505 0.96859 0.82049 0.94162 1.21636 0.91992 1.03249 0.97220 1.21996 1.00609 0.98389 0.96029 1.21617 0.82272 0.96622 0.98870 1.44341 1.04032 1.81193 1.04224 1.19819 1.07610 1.21875 0.99520 0.97480 1.27480 1.00012 1.05960 0.91093 1.71011 1.44182 1.21263 1.20800 0.83939 0.76614 0.72489 0.77342 1.22510 1.22030 1.14900 1.21367 0.95321 0.95283 0.86399 1.77822 0.98759 1.12501 1.27604 1.47853 1.03320 1.10938 1.57457 0.69664 0.86371 0.88917 0.87223 0.82939 0.83171 0.73862 0.89305 0.88717 0.94504 0.88152 0.93899 0.92638 0.94272 0.93480 0.96644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.51 71.24 0.75 -0.04 16 2 C 0.28 6.21 8.24 138.23 1.14 7.35 16 3 N -0.57 -16.80 11.19 -179.73 -2.01 -18.81 16 4 C 0.23 6.76 6.63 138.63 0.92 7.68 16 5 C -0.04 -0.86 6.33 29.10 0.18 -0.68 16 6 C 0.51 16.02 7.79 87.65 0.68 16.70 16 7 O -0.59 -26.55 15.70 -3.04 -0.05 -26.60 16 8 N -0.70 -18.00 5.08 -441.47 -2.24 -20.24 16 9 C 0.14 4.83 2.62 45.22 0.12 4.95 16 10 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 11 C -0.10 -2.67 5.35 30.62 0.16 -2.51 16 12 C -0.13 -4.20 6.08 30.67 0.19 -4.01 16 13 C 0.13 5.41 4.36 86.36 0.38 5.78 16 14 N -0.61 -30.85 2.71 -698.28 -1.89 -32.74 16 15 C -0.36 -22.24 9.70 84.03 0.82 -21.43 16 16 H 0.01 0.52 8.06 -2.91 -0.02 0.49 16 17 C -0.05 -2.94 4.82 84.86 0.41 -2.53 16 18 N -0.93 -61.60 13.70 21.65 0.30 -61.30 16 19 Si 1.07 51.87 27.00 68.60 1.85 53.72 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 22 H -0.23 -9.20 4.73 99.48 0.47 -8.73 16 23 C 0.14 6.21 6.12 86.51 0.53 6.74 16 24 N -0.34 -9.62 12.80 -51.33 -0.66 -10.28 16 25 N -0.48 -10.04 7.45 -50.71 -0.38 -10.42 16 26 H 0.45 5.69 8.96 -213.09 -1.91 3.78 16 27 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.42 6.35 8.60 -92.71 -0.80 5.56 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.98 5.82 -2.39 -0.01 1.96 16 38 H 0.06 2.05 6.60 -2.39 -0.02 2.04 16 39 H 0.25 16.79 8.73 -92.71 -0.81 15.98 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.01 0.78 7.93 -2.39 -0.02 0.76 16 Total: -1.00 -95.34 336.82 -0.72 -96.06 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -1.92 Total: 12.61 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 6.27 Total: 18.01 kcal Atomic # 7 Polarization: -146.92 SS G_CDS: -6.88 Total: -153.80 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.85 Total: 53.72 kcal Total: -95.34 -0.72 -96.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007309051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.894 kcal (2) G-P(sol) polarization free energy of solvation -95.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds