Wall clock time and date at job start Tue Mar 31 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47334 * 2 1 4 4 N 1.46496 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.34813 * 126.59885 * 124.99543 * 4 3 2 6 6 C 1.36596 * 106.84101 * 179.97438 * 5 4 3 7 7 C 1.47525 * 125.77076 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99635 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00144 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00446 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.84756 * 46.17139 * 10 9 7 12 12 C 1.53777 * 113.61944 * 177.48202 * 10 9 7 13 13 C 1.53962 * 87.11000 * 89.18487 * 12 10 9 14 14 H 1.09002 * 113.66353 * 139.88864 * 13 12 10 15 15 N 1.46494 * 113.61378 * 270.84367 * 13 12 10 16 16 C 1.36942 * 119.99862 * 254.97662 * 15 13 12 17 17 H 1.08000 * 119.99843 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99712 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99942 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00501 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47314 * 89.99692 * 20 18 16 22 22 H 1.48494 * 109.47400 * 209.99842 * 20 18 16 23 23 H 1.48499 * 109.46844 * 330.00116 * 20 18 16 24 24 C 1.53779 * 87.01749 * 25.36362 * 13 12 10 25 25 N 1.34394 * 108.45930 * 0.24924 * 6 5 4 26 26 N 1.28765 * 109.52487 * 359.57933 * 25 6 5 27 27 H 1.09004 * 109.47052 * 60.00252 * 1 2 3 28 28 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46766 * 300.00249 * 1 2 3 30 30 H 1.09002 * 109.47473 * 239.99559 * 2 1 3 31 31 H 1.09004 * 109.47052 * 119.99748 * 2 1 3 32 32 H 1.09005 * 109.47577 * 59.99735 * 3 2 1 33 33 H 1.09004 * 109.46845 * 299.99874 * 3 2 1 34 34 H 1.08004 * 126.57705 * 0.02562 * 5 4 3 35 35 H 0.97000 * 120.00283 * 0.02562 * 9 7 6 36 36 H 1.08998 * 113.61521 * 203.66471 * 12 10 9 37 37 H 1.08995 * 113.61238 * 334.57070 * 12 10 9 38 38 H 0.96998 * 120.00492 * 74.98635 * 15 13 12 39 39 H 0.96999 * 119.99944 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.61463 * 220.04553 * 24 13 12 41 41 H 1.09008 * 113.61529 * 89.23103 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3084 2.0633 -0.8875 6 6 5.5941 1.7989 -0.5095 7 6 6.8100 2.2776 -1.1941 8 8 6.7147 2.9727 -2.1873 9 7 8.0264 1.9445 -0.7188 10 6 9.2339 2.4204 -1.3984 11 1 9.1889 3.4803 -1.6485 12 6 10.5388 2.0055 -0.6984 13 6 10.4994 0.7261 -1.5539 14 1 11.4762 0.4204 -1.9290 15 7 9.7579 -0.3734 -0.9316 16 6 10.4335 -1.4304 -0.3824 17 1 11.5129 -1.4532 -0.4077 18 6 9.7308 -2.4720 0.2078 19 7 10.3801 -3.4877 0.7362 20 14 7.8638 -2.4322 0.2522 21 1 7.3255 -3.0892 -0.9659 22 1 7.3818 -3.1534 1.4575 23 1 7.3998 -1.0224 0.3003 24 6 9.6722 1.5285 -2.5720 25 7 5.5641 1.0239 0.5881 26 7 4.3412 0.7971 0.9215 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9955 2.6566 -1.7340 35 1 8.1024 1.3898 0.0732 36 1 11.3828 2.6562 -0.9269 37 1 10.4219 1.8214 0.3695 38 1 8.7884 -0.3529 -0.9086 39 1 9.8891 -4.2157 1.1482 40 1 8.8557 0.9595 -3.0166 41 1 10.2781 2.0492 -3.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022903464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:42 Heat of formation + Delta-G solvation = 94.952544 kcal Electronic energy + Delta-G solvation = -23634.919847 eV Core-core repulsion = 20167.322267 eV Total energy + Delta-G solvation = -3467.597580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24896 -39.79165 -37.83203 -36.26635 -33.72137 -32.99998 -32.46128 -30.88054 -30.30194 -27.39620 -25.25764 -24.82378 -23.63193 -23.04971 -21.92861 -21.67904 -20.12313 -19.09307 -18.04182 -17.49740 -16.43700 -16.21935 -15.89394 -15.39937 -15.06059 -14.74492 -14.61034 -14.29885 -13.93375 -13.73457 -13.54711 -13.06295 -12.61272 -12.53287 -12.27289 -12.09291 -11.96946 -11.92390 -11.72559 -11.43390 -11.15738 -10.90595 -10.83413 -10.46624 -10.39900 -10.05266 -9.98349 -9.64258 -9.50983 -9.34929 -8.92172 -8.61411 -7.26509 -5.74932 -3.11809 1.06136 1.76828 1.88611 3.30839 3.43284 3.45248 3.53405 3.57512 3.98217 4.17728 4.28404 4.55689 4.63900 4.68067 4.76598 4.87342 4.90910 5.03316 5.09979 5.13011 5.25684 5.34620 5.44721 5.51713 5.55497 5.69464 5.73723 5.80498 5.83579 6.11556 6.18955 6.23385 6.34007 6.53970 6.61784 6.74225 6.96767 7.69007 7.99138 8.02577 8.38016 8.44502 9.22556 9.95077 10.13899 11.42478 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.005235 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.426475 B = 5347.657862 C = 7000.856392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.365 5.365 5 C 0.090 3.910 6 C -0.102 4.102 7 C 0.605 3.395 8 O -0.546 6.546 9 N -0.690 5.690 10 C 0.125 3.875 11 H 0.085 0.915 12 C -0.178 4.178 13 C 0.170 3.830 14 H 0.073 0.927 15 N -0.730 5.730 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.932 5.932 20 Si 0.874 3.126 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.258 1.258 24 C -0.168 4.168 25 N -0.193 5.193 26 N -0.063 5.063 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.204 0.796 35 H 0.415 0.585 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.363 0.637 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.867 13.882 -3.447 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.067 4.067 6 C -0.241 4.241 7 C 0.389 3.611 8 O -0.423 6.423 9 N -0.341 5.341 10 C 0.020 3.980 11 H 0.103 0.897 12 C -0.219 4.219 13 C 0.058 3.942 14 H 0.091 0.909 15 N -0.371 5.371 16 C -0.379 4.379 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.579 5.579 20 Si 0.704 3.296 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.183 1.183 24 C -0.208 4.208 25 N -0.067 5.067 26 N -0.044 5.044 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.221 0.779 35 H 0.252 0.748 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.728 13.295 -2.793 22.334 hybrid contribution -1.589 0.176 -0.382 1.643 sum -19.316 13.471 -3.175 23.763 Atomic orbital electron populations 1.21696 0.93846 1.02899 1.02212 1.21857 0.96930 0.94626 1.04510 1.22128 0.72664 1.00078 1.04987 1.50613 1.08788 1.35324 1.20238 1.23329 0.90149 0.97288 0.95938 1.21560 0.94676 1.08223 0.99631 1.16735 0.81821 0.79596 0.82982 1.90766 1.86821 1.39179 1.25561 1.45702 1.04378 1.52487 1.31544 1.21830 0.84101 0.97378 0.94711 0.89701 1.24160 0.95013 1.01148 1.01599 1.21153 0.95254 0.86628 0.91123 0.90936 1.42624 1.04470 1.21062 1.68962 1.19091 0.93040 0.95902 1.29835 0.88993 1.24656 0.97291 0.96574 1.00168 1.69704 1.34393 1.10364 1.43399 0.86700 0.87137 0.78767 0.77035 1.21760 1.21773 1.18306 1.23866 1.00862 0.98962 0.97083 1.74795 1.12647 1.09049 1.10217 1.82027 0.93393 1.17256 1.11705 0.92275 0.91610 0.92117 0.90929 0.89888 0.88375 0.87795 0.77948 0.74763 0.89373 0.90577 0.80258 0.93063 0.91431 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.14 -0.99 6.14 -26.73 -0.16 -1.15 16 3 C 0.12 0.79 6.54 -4.05 -0.03 0.77 16 4 N -0.36 -4.16 3.69 -61.06 -0.23 -4.38 16 5 C 0.09 1.07 11.27 -16.84 -0.19 0.88 16 6 C -0.10 -1.63 6.99 -83.55 -0.58 -2.21 16 7 C 0.60 10.51 7.82 -12.48 -0.10 10.41 16 8 O -0.55 -10.01 16.80 5.28 0.09 -9.92 16 9 N -0.69 -12.14 4.33 -54.06 -0.23 -12.37 16 10 C 0.12 2.02 4.00 -67.12 -0.27 1.75 16 11 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 12 C -0.18 -2.88 7.58 -25.83 -0.20 -3.08 16 13 C 0.17 3.27 4.56 -67.03 -0.31 2.96 16 14 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 15 N -0.73 -17.35 4.83 -52.55 -0.25 -17.60 16 16 C -0.25 -7.05 10.46 -15.06 -0.16 -7.21 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -29.63 13.97 55.49 0.78 -28.85 16 20 Si 0.87 22.86 27.74 -169.99 -4.71 18.15 16 21 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.26 -6.30 6.52 56.52 0.37 -5.93 16 24 C -0.17 -2.80 7.61 -25.92 -0.20 -2.99 16 25 N -0.19 -3.47 12.04 32.85 0.40 -3.07 16 26 N -0.06 -1.00 13.65 60.35 0.82 -0.18 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.41 7.83 7.52 -40.82 -0.31 7.53 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 38 H 0.36 8.63 4.24 -40.82 -0.17 8.46 16 39 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -35.40 348.00 -6.00 -41.40 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.98 Total: 11.61 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.91 Total: -0.03 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: 1.28 Total: -66.46 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.71 Total: 18.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.40 -6.00 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022903464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.351 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds