Wall clock time and date at job start Tue Mar 31 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47334 * 2 1 4 4 N 1.46496 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.34813 * 126.59885 * 124.99543 * 4 3 2 6 6 C 1.36596 * 106.84101 * 179.97438 * 5 4 3 7 7 C 1.47525 * 125.77076 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99635 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00144 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00446 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.84756 * 46.17139 * 10 9 7 12 12 C 1.53777 * 113.61944 * 177.48202 * 10 9 7 13 13 C 1.53962 * 87.11000 * 89.18487 * 12 10 9 14 14 H 1.09002 * 113.66353 * 139.88864 * 13 12 10 15 15 N 1.46494 * 113.61378 * 270.84367 * 13 12 10 16 16 C 1.36942 * 119.99862 * 254.97662 * 15 13 12 17 17 H 1.08000 * 119.99843 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99712 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99942 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00501 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47314 * 89.99692 * 20 18 16 22 22 H 1.48494 * 109.47400 * 209.99842 * 20 18 16 23 23 H 1.48499 * 109.46844 * 330.00116 * 20 18 16 24 24 C 1.53779 * 87.01749 * 25.36362 * 13 12 10 25 25 N 1.34394 * 108.45930 * 0.24924 * 6 5 4 26 26 N 1.28765 * 109.52487 * 359.57933 * 25 6 5 27 27 H 1.09004 * 109.47052 * 60.00252 * 1 2 3 28 28 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46766 * 300.00249 * 1 2 3 30 30 H 1.09002 * 109.47473 * 239.99559 * 2 1 3 31 31 H 1.09004 * 109.47052 * 119.99748 * 2 1 3 32 32 H 1.09005 * 109.47577 * 59.99735 * 3 2 1 33 33 H 1.09004 * 109.46845 * 299.99874 * 3 2 1 34 34 H 1.08004 * 126.57705 * 0.02562 * 5 4 3 35 35 H 0.97000 * 120.00283 * 0.02562 * 9 7 6 36 36 H 1.08998 * 113.61521 * 203.66471 * 12 10 9 37 37 H 1.08995 * 113.61238 * 334.57070 * 12 10 9 38 38 H 0.96998 * 120.00492 * 74.98635 * 15 13 12 39 39 H 0.96999 * 119.99944 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.61463 * 220.04553 * 24 13 12 41 41 H 1.09008 * 113.61529 * 89.23103 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3084 2.0633 -0.8875 6 6 5.5941 1.7989 -0.5095 7 6 6.8100 2.2776 -1.1941 8 8 6.7147 2.9727 -2.1873 9 7 8.0264 1.9445 -0.7188 10 6 9.2339 2.4204 -1.3984 11 1 9.1889 3.4803 -1.6485 12 6 10.5388 2.0055 -0.6984 13 6 10.4994 0.7261 -1.5539 14 1 11.4762 0.4204 -1.9290 15 7 9.7579 -0.3734 -0.9316 16 6 10.4335 -1.4304 -0.3824 17 1 11.5129 -1.4532 -0.4077 18 6 9.7308 -2.4720 0.2078 19 7 10.3801 -3.4877 0.7362 20 14 7.8638 -2.4322 0.2522 21 1 7.3255 -3.0892 -0.9659 22 1 7.3818 -3.1534 1.4575 23 1 7.3998 -1.0224 0.3003 24 6 9.6722 1.5285 -2.5720 25 7 5.5641 1.0239 0.5881 26 7 4.3412 0.7971 0.9215 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9955 2.6566 -1.7340 35 1 8.1024 1.3898 0.0732 36 1 11.3828 2.6562 -0.9269 37 1 10.4219 1.8214 0.3695 38 1 8.7884 -0.3529 -0.9086 39 1 9.8891 -4.2157 1.1482 40 1 8.8557 0.9595 -3.0166 41 1 10.2781 2.0492 -3.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022903464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:42 Heat of formation + Delta-G solvation = 68.592432 kcal Electronic energy + Delta-G solvation = -23636.062907 eV Core-core repulsion = 20167.322267 eV Total energy + Delta-G solvation = -3468.740640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.28753 -41.13818 -39.21830 -36.97068 -35.58213 -34.26241 -33.55626 -32.53512 -31.75475 -28.06622 -26.67134 -26.33675 -25.17957 -23.94927 -23.29177 -22.51709 -21.29847 -20.68205 -19.46434 -19.09652 -17.41289 -17.22262 -17.13444 -16.65483 -16.36891 -15.96916 -15.90846 -15.72712 -15.24906 -15.02549 -14.67605 -14.45090 -13.87033 -13.67661 -13.54439 -13.23614 -13.13896 -13.00927 -12.92674 -12.58094 -12.53068 -12.29113 -12.00434 -11.94911 -11.81494 -11.79179 -11.31853 -11.28064 -11.02555 -10.97541 -10.44332 -9.96510 -9.30810 -8.05552 -5.37330 0.11105 0.56256 1.08830 1.31622 1.39806 1.46269 2.09106 2.20474 2.43912 3.14432 3.25780 3.30813 3.54401 3.69539 3.75521 3.78802 3.87448 3.92524 4.11757 4.18683 4.23960 4.34754 4.41551 4.49597 4.67157 4.77076 4.84308 4.92291 5.00552 5.05275 5.07578 5.13293 5.24747 5.28574 5.31874 5.47593 5.59383 5.80523 6.20456 6.38190 6.84941 7.06096 7.08670 7.84491 8.00882 9.15370 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.005235 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.426475 B = 5347.657862 C = 7000.856392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.112 3.888 4 N -0.348 5.348 5 C 0.115 3.885 6 C -0.134 4.134 7 C 0.605 3.395 8 O -0.559 6.559 9 N -0.699 5.699 10 C 0.125 3.875 11 H 0.106 0.894 12 C -0.159 4.159 13 C 0.144 3.856 14 H 0.070 0.930 15 N -0.736 5.736 16 C -0.224 4.224 17 H 0.067 0.933 18 C -0.054 4.054 19 N -0.979 5.979 20 Si 0.935 3.065 21 H -0.295 1.295 22 H -0.303 1.303 23 H -0.237 1.237 24 C -0.153 4.153 25 N -0.234 5.234 26 N -0.095 5.095 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.246 0.754 35 H 0.406 0.594 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.364 0.636 39 H 0.256 0.744 40 H 0.047 0.953 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.084 16.741 -4.957 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.133 5.133 5 C -0.043 4.043 6 C -0.275 4.275 7 C 0.390 3.610 8 O -0.437 6.437 9 N -0.349 5.349 10 C 0.021 3.979 11 H 0.123 0.877 12 C -0.200 4.200 13 C 0.035 3.965 14 H 0.088 0.912 15 N -0.378 5.378 16 C -0.355 4.355 17 H 0.085 0.915 18 C -0.245 4.245 19 N -0.630 5.630 20 Si 0.764 3.236 21 H -0.223 1.223 22 H -0.230 1.230 23 H -0.161 1.161 24 C -0.193 4.193 25 N -0.107 5.107 26 N -0.075 5.075 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.242 0.758 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.198 0.802 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.966 16.215 -4.318 26.081 hybrid contribution -0.902 -0.635 0.012 1.103 sum -20.868 15.580 -4.305 26.396 Atomic orbital electron populations 1.21663 0.91798 1.03032 1.03548 1.21821 0.98606 0.94723 1.02649 1.22681 0.69735 1.00229 1.08013 1.50948 1.10237 1.33415 1.18700 1.23911 0.88686 0.95799 0.95909 1.21671 0.95749 1.09775 1.00279 1.16905 0.82095 0.79185 0.82776 1.90741 1.87074 1.39872 1.26056 1.45832 1.05135 1.52502 1.31384 1.21939 0.83617 0.98274 0.94061 0.87664 1.24026 0.96612 0.99395 0.99950 1.21533 0.95286 0.86652 0.93053 0.91197 1.42623 1.04590 1.21356 1.69246 1.19102 0.92168 0.96511 1.27715 0.91492 1.25280 1.01196 0.96790 1.01278 1.69845 1.35891 1.11501 1.45767 0.85705 0.82380 0.79527 0.75971 1.22258 1.22989 1.16131 1.23828 1.00002 0.98201 0.97238 1.74748 1.13931 1.10442 1.11536 1.81924 0.93467 1.18722 1.13391 0.90492 0.92166 0.91177 0.92206 0.92445 0.86522 0.83574 0.73826 0.75762 0.85658 0.92245 0.80197 0.93503 0.93370 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.91 71.98 0.71 -0.26 16 2 C -0.14 -1.70 6.14 30.59 0.19 -1.51 16 3 C 0.11 1.07 6.54 86.38 0.56 1.63 16 4 N -0.35 -7.09 3.69 -347.10 -1.28 -8.37 16 5 C 0.12 2.40 11.27 83.85 0.95 3.35 16 6 C -0.13 -4.12 6.99 40.82 0.29 -3.84 16 7 C 0.61 20.06 7.82 86.69 0.68 20.74 16 8 O -0.56 -19.15 16.80 -4.02 -0.07 -19.22 16 9 N -0.70 -23.69 4.33 -443.22 -1.92 -25.61 16 10 C 0.13 3.74 4.00 45.52 0.18 3.92 16 11 H 0.11 2.78 8.05 -2.39 -0.02 2.76 16 12 C -0.16 -4.79 7.58 31.18 0.24 -4.55 16 13 C 0.14 5.34 4.56 45.58 0.21 5.55 16 14 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 15 N -0.74 -34.87 4.83 -320.16 -1.55 -36.42 16 16 C -0.22 -12.91 10.46 84.03 0.88 -12.03 16 17 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 18 C -0.05 -3.26 5.50 84.86 0.47 -2.80 16 19 N -0.98 -64.35 13.97 21.65 0.30 -64.05 16 20 Si 0.94 48.92 27.74 68.60 1.90 50.82 16 21 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 22 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 23 H -0.24 -11.47 6.52 99.48 0.65 -10.82 16 24 C -0.15 -4.72 7.61 31.12 0.24 -4.48 16 25 N -0.23 -8.28 12.04 -50.00 -0.60 -8.88 16 26 N -0.09 -2.94 13.65 37.02 0.51 -2.43 16 27 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.15 0.24 8.08 -2.38 -0.02 0.22 16 34 H 0.25 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.41 15.19 7.52 -92.71 -0.70 14.50 16 36 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 38 H 0.36 17.18 4.24 -92.71 -0.39 16.78 16 39 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 Total: -1.00 -80.15 348.00 2.78 -77.37 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.10 Total: 31.06 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.58 Total: 5.73 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -4.54 Total: -145.76 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.07 Total: -19.22 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.90 Total: 50.82 kcal Total: -80.15 2.78 -77.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022903464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.960 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds