Wall clock time and date at job start Tue Mar 31 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33315 * 126.81575 * 2 1 4 4 N 1.28520 * 109.43992 * 180.27718 * 3 2 1 5 5 N 1.28714 * 110.63278 * 359.72851 * 4 3 2 6 6 H 0.97008 * 126.03418 * 180.02562 * 5 4 3 7 7 C 1.37008 * 126.81297 * 179.82075 * 2 1 3 8 8 C 1.47237 * 127.18568 * 359.97438 * 7 2 1 9 9 O 1.21614 * 120.00282 * 359.70562 * 8 7 2 10 10 N 1.34772 * 119.99766 * 179.71043 * 8 7 2 11 11 C 1.46504 * 120.00161 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47376 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.69538 * 60.13048 * 12 11 10 14 14 C 1.53622 * 109.66307 * 180.72595 * 12 11 10 15 15 C 1.53045 * 109.24235 * 174.55441 * 14 12 11 16 16 C 1.53045 * 109.53296 * 298.51018 * 15 14 12 17 17 C 1.53185 * 109.31479 * 61.36235 * 16 15 14 18 18 N 1.46920 * 109.58655 * 299.77634 * 12 11 10 19 19 C 1.36934 * 120.63520 * 6.62814 * 18 12 11 20 20 H 1.08009 * 119.99772 * 327.91636 * 19 18 12 21 21 C 1.38808 * 120.00445 * 148.18748 * 19 18 12 22 22 N 1.31624 * 120.00174 * 347.46721 * 21 19 18 23 23 Si 1.86800 * 120.00162 * 167.46142 * 21 19 18 24 24 H 1.48501 * 109.47163 * 60.00328 * 23 21 19 25 25 H 1.48506 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47424 * 300.00242 * 23 21 19 27 27 H 1.08995 * 109.47230 * 270.18266 * 1 2 3 28 28 H 1.09006 * 109.46676 * 30.17676 * 1 2 3 29 29 H 1.08999 * 109.46890 * 150.17604 * 1 2 3 30 30 H 0.96998 * 120.00247 * 359.97438 * 10 8 7 31 31 H 1.09006 * 109.46607 * 60.00100 * 11 10 8 32 32 H 1.08995 * 109.46976 * 300.00500 * 11 10 8 33 33 H 1.08997 * 109.63645 * 54.55638 * 14 12 11 34 34 H 1.09003 * 109.45885 * 294.43315 * 14 12 11 35 35 H 1.08994 * 109.46063 * 178.49286 * 15 14 12 36 36 H 1.08997 * 109.45095 * 58.51658 * 15 14 12 37 37 H 1.09003 * 109.49690 * 301.40842 * 16 15 14 38 38 H 1.09002 * 109.52114 * 181.33261 * 16 15 14 39 39 H 1.09000 * 109.59025 * 185.57345 * 17 16 15 40 40 H 1.09004 * 109.70245 * 65.22034 * 17 16 15 41 41 H 0.96998 * 120.00246 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5325 0.6835 -0.0059 5 7 3.6056 -0.6016 -0.0042 6 1 4.4212 -1.1268 -0.0073 7 6 2.3280 -1.0969 0.0034 8 6 1.9221 -2.5122 0.0084 9 8 0.7421 -2.8064 0.0152 10 7 2.8583 -3.4817 0.0054 11 6 2.4546 -4.8900 0.0109 12 6 3.7006 -5.7778 0.0054 13 1 4.3017 -5.5728 0.8913 14 6 3.2821 -7.2559 -0.0071 15 6 4.5289 -8.1319 -0.1497 16 6 5.2262 -7.8178 -1.4753 17 6 5.6634 -6.3497 -1.4824 18 7 4.4934 -5.5064 -1.2013 19 6 4.1519 -4.4835 -2.0452 20 1 3.1146 -4.2099 -2.1700 21 6 5.1384 -3.8018 -2.7444 22 7 6.4043 -3.9620 -2.4213 23 14 4.6695 -2.6573 -4.1443 24 1 3.7863 -1.5805 -3.6286 25 1 5.8972 -2.0558 -4.7243 26 1 3.9523 -3.4259 -5.1931 27 1 -0.3633 0.0033 1.0276 28 1 -0.3633 0.8885 -0.5166 29 1 -0.3633 -0.8916 -0.5111 30 1 3.7995 -3.2470 -0.0003 31 1 1.8556 -5.0996 -0.8753 32 1 1.8654 -5.0955 0.9046 33 1 2.6106 -7.4393 -0.8459 34 1 2.7728 -7.4970 0.9259 35 1 4.2385 -9.1824 -0.1321 36 1 5.2109 -7.9297 0.6762 37 1 4.5365 -7.9960 -2.3004 38 1 6.1009 -8.4585 -1.5875 39 1 6.0713 -6.0945 -2.4605 40 1 6.4223 -6.1885 -0.7167 41 1 7.0936 -3.4854 -2.9097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024588448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:49 Heat of formation + Delta-G solvation = 68.374667 kcal Electronic energy + Delta-G solvation = -24692.665428 eV Core-core repulsion = 21223.915345 eV Total energy + Delta-G solvation = -3468.750083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.15385 -39.32011 -37.80840 -34.65264 -33.62370 -33.22775 -32.24643 -30.83142 -30.05531 -27.84155 -26.18246 -25.04842 -23.68766 -22.30155 -21.85604 -20.77013 -20.29924 -19.31186 -18.57981 -16.81813 -16.32557 -16.03137 -15.66512 -15.57572 -14.44094 -14.16137 -13.88404 -13.77248 -13.63055 -13.46891 -12.98741 -12.94075 -12.57561 -12.54842 -12.19584 -11.93581 -11.70603 -11.36095 -11.09782 -11.01327 -10.91367 -10.71579 -10.44172 -10.36825 -10.29122 -10.12715 -9.87907 -9.63197 -9.48630 -9.14139 -8.78361 -8.48131 -6.83120 -6.02491 -3.51330 1.12785 2.44009 2.68615 3.19530 3.28083 3.31759 3.33899 3.48279 4.25794 4.45982 4.82749 5.04854 5.13054 5.15107 5.25620 5.34980 5.52757 5.55849 5.77153 5.82064 5.84127 5.88515 5.99601 5.99972 6.12464 6.25832 6.27467 6.39413 6.47790 6.58416 6.62427 6.70396 6.78445 6.81077 6.89274 7.25700 7.52525 7.60115 7.83958 8.22923 8.40908 8.45981 8.97989 9.59128 10.17994 11.02855 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.006242 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.212953 B = 4484.401042 C = 5604.168375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.046 3.954 3 N -0.277 5.277 4 N -0.053 5.053 5 N -0.367 5.367 6 H 0.456 0.544 7 C -0.056 4.056 8 C 0.587 3.413 9 O -0.535 6.535 10 N -0.686 5.686 11 C 0.135 3.865 12 C 0.159 3.841 13 H 0.033 0.967 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.010 3.990 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.283 1.283 25 H -0.288 1.288 26 H -0.281 1.281 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.410 0.590 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.019 0.981 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 -1.531 6.066 7.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 N -0.144 5.144 4 N -0.035 5.035 5 N -0.094 5.094 6 H 0.304 0.696 7 C -0.191 4.191 8 C 0.370 3.630 9 O -0.412 6.412 10 N -0.336 5.336 11 C 0.011 3.989 12 C 0.052 3.948 13 H 0.051 0.949 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.047 3.953 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.190 4.190 22 N -0.540 5.540 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.214 1.214 26 H -0.207 1.207 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.770 -0.312 5.988 7.662 hybrid contribution 0.560 -0.656 -0.987 1.311 sum -4.210 -0.967 5.000 6.608 Atomic orbital electron populations 1.20250 0.85109 1.04167 1.03381 1.22248 0.98472 0.87116 1.01556 1.74865 0.95338 1.26176 1.17974 1.78134 1.15837 0.92591 1.16902 1.45537 1.09309 1.06850 1.47704 0.69647 1.22235 0.84846 0.96925 1.15109 1.16711 0.86120 0.82225 0.77977 1.90766 1.16647 1.82021 1.51743 1.45925 1.09907 1.06261 1.71505 1.21390 0.97184 0.78974 1.01304 1.20845 0.91001 0.91877 0.91077 0.94899 1.22006 0.97640 0.96377 1.00630 1.21361 0.97032 0.97720 0.98405 1.22190 0.99109 1.00514 0.96534 1.20775 0.88016 0.85046 1.01423 1.44071 1.30744 1.34457 1.22017 1.19163 0.91988 1.08576 1.18879 0.91386 1.25096 0.95558 0.98237 1.00132 1.69974 0.98955 1.44191 1.40887 0.86593 0.77429 0.80854 0.83328 1.20966 1.21379 1.20679 0.90334 0.90697 0.88807 0.75257 0.90985 0.91986 0.91964 0.92947 0.93626 0.92867 0.92806 0.93490 0.89683 0.96293 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 9.93 36.01 0.36 -0.58 16 2 C 0.05 0.77 7.30 -82.39 -0.60 0.17 16 3 N -0.28 -4.86 12.35 33.51 0.41 -4.44 16 4 N -0.05 -0.91 13.35 60.35 0.81 -0.11 16 5 N -0.37 -5.82 6.97 33.31 0.23 -5.59 16 6 H 0.46 6.34 8.32 -190.32 -1.58 4.76 16 7 C -0.06 -0.95 7.17 -82.33 -0.59 -1.54 16 8 C 0.59 10.29 7.81 -12.61 -0.10 10.19 16 9 O -0.53 -10.18 14.99 5.26 0.08 -10.10 16 10 N -0.69 -11.69 3.86 -61.44 -0.24 -11.93 16 11 C 0.13 2.26 4.44 -4.04 -0.02 2.24 16 12 C 0.16 2.76 3.03 -67.38 -0.20 2.55 16 13 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 14 C -0.13 -1.93 5.40 -26.38 -0.14 -2.07 16 15 C -0.11 -1.62 5.88 -26.68 -0.16 -1.78 16 16 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 17 C 0.17 3.62 5.25 -3.71 -0.02 3.61 16 18 N -0.59 -12.29 2.96 -164.53 -0.49 -12.78 16 19 C -0.26 -5.89 6.94 -15.06 -0.10 -6.00 16 20 H 0.07 1.62 5.90 -52.48 -0.31 1.31 16 21 C 0.01 0.23 5.00 -17.43 -0.09 0.15 16 22 N -0.90 -22.63 11.18 55.49 0.62 -22.01 16 23 Si 0.89 20.31 29.57 -169.99 -5.03 15.28 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.33 6.62 -51.93 -0.34 0.99 16 30 H 0.41 7.11 6.65 -40.82 -0.27 6.84 16 31 H 0.07 1.33 7.41 -51.93 -0.39 0.94 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 2.05 6.18 -51.93 -0.32 1.73 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -27.09 329.73 -7.46 -34.55 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.00 Total: 7.87 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.83 Total: 4.27 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 1.35 Total: -56.86 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.09 -7.46 -34.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024588448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.927 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds