Wall clock time and date at job start Tue Mar 31 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33315 * 126.81575 * 2 1 4 4 N 1.28520 * 109.43992 * 180.27718 * 3 2 1 5 5 N 1.28714 * 110.63278 * 359.72851 * 4 3 2 6 6 H 0.97008 * 126.03418 * 180.02562 * 5 4 3 7 7 C 1.37008 * 126.81297 * 179.82075 * 2 1 3 8 8 C 1.47237 * 127.18568 * 359.97438 * 7 2 1 9 9 O 1.21614 * 120.00282 * 359.70562 * 8 7 2 10 10 N 1.34772 * 119.99766 * 179.71043 * 8 7 2 11 11 C 1.46504 * 120.00161 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47376 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.69538 * 60.13048 * 12 11 10 14 14 C 1.53622 * 109.66307 * 180.72595 * 12 11 10 15 15 C 1.53045 * 109.24235 * 174.55441 * 14 12 11 16 16 C 1.53045 * 109.53296 * 298.51018 * 15 14 12 17 17 C 1.53185 * 109.31479 * 61.36235 * 16 15 14 18 18 N 1.46920 * 109.58655 * 299.77634 * 12 11 10 19 19 C 1.36934 * 120.63520 * 6.62814 * 18 12 11 20 20 H 1.08009 * 119.99772 * 327.91636 * 19 18 12 21 21 C 1.38808 * 120.00445 * 148.18748 * 19 18 12 22 22 N 1.31624 * 120.00174 * 347.46721 * 21 19 18 23 23 Si 1.86800 * 120.00162 * 167.46142 * 21 19 18 24 24 H 1.48501 * 109.47163 * 60.00328 * 23 21 19 25 25 H 1.48506 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47424 * 300.00242 * 23 21 19 27 27 H 1.08995 * 109.47230 * 270.18266 * 1 2 3 28 28 H 1.09006 * 109.46676 * 30.17676 * 1 2 3 29 29 H 1.08999 * 109.46890 * 150.17604 * 1 2 3 30 30 H 0.96998 * 120.00247 * 359.97438 * 10 8 7 31 31 H 1.09006 * 109.46607 * 60.00100 * 11 10 8 32 32 H 1.08995 * 109.46976 * 300.00500 * 11 10 8 33 33 H 1.08997 * 109.63645 * 54.55638 * 14 12 11 34 34 H 1.09003 * 109.45885 * 294.43315 * 14 12 11 35 35 H 1.08994 * 109.46063 * 178.49286 * 15 14 12 36 36 H 1.08997 * 109.45095 * 58.51658 * 15 14 12 37 37 H 1.09003 * 109.49690 * 301.40842 * 16 15 14 38 38 H 1.09002 * 109.52114 * 181.33261 * 16 15 14 39 39 H 1.09000 * 109.59025 * 185.57345 * 17 16 15 40 40 H 1.09004 * 109.70245 * 65.22034 * 17 16 15 41 41 H 0.96998 * 120.00246 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5325 0.6835 -0.0059 5 7 3.6056 -0.6016 -0.0042 6 1 4.4212 -1.1268 -0.0073 7 6 2.3280 -1.0969 0.0034 8 6 1.9221 -2.5122 0.0084 9 8 0.7421 -2.8064 0.0152 10 7 2.8583 -3.4817 0.0054 11 6 2.4546 -4.8900 0.0109 12 6 3.7006 -5.7778 0.0054 13 1 4.3017 -5.5728 0.8913 14 6 3.2821 -7.2559 -0.0071 15 6 4.5289 -8.1319 -0.1497 16 6 5.2262 -7.8178 -1.4753 17 6 5.6634 -6.3497 -1.4824 18 7 4.4934 -5.5064 -1.2013 19 6 4.1519 -4.4835 -2.0452 20 1 3.1146 -4.2099 -2.1700 21 6 5.1384 -3.8018 -2.7444 22 7 6.4043 -3.9620 -2.4213 23 14 4.6695 -2.6573 -4.1443 24 1 3.7863 -1.5805 -3.6286 25 1 5.8972 -2.0558 -4.7243 26 1 3.9523 -3.4259 -5.1931 27 1 -0.3633 0.0033 1.0276 28 1 -0.3633 0.8885 -0.5166 29 1 -0.3633 -0.8916 -0.5111 30 1 3.7995 -3.2470 -0.0003 31 1 1.8556 -5.0996 -0.8753 32 1 1.8654 -5.0955 0.9046 33 1 2.6106 -7.4393 -0.8459 34 1 2.7728 -7.4970 0.9259 35 1 4.2385 -9.1824 -0.1321 36 1 5.2109 -7.9297 0.6762 37 1 4.5365 -7.9960 -2.3004 38 1 6.1009 -8.4585 -1.5875 39 1 6.0713 -6.0945 -2.4605 40 1 6.4223 -6.1885 -0.7167 41 1 7.0936 -3.4854 -2.9097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024588448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:46 Heat of formation + Delta-G solvation = 50.899731 kcal Electronic energy + Delta-G solvation = -24693.423198 eV Core-core repulsion = 21223.915345 eV Total energy + Delta-G solvation = -3469.507853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.46758 -40.74143 -39.27785 -36.02725 -34.97411 -34.87793 -33.54892 -32.28189 -31.66409 -29.05728 -27.68291 -26.60863 -25.05585 -23.82555 -23.19542 -22.17409 -21.65908 -20.75447 -19.95293 -18.40574 -17.69541 -17.48251 -17.20530 -16.97529 -16.11846 -15.74198 -15.31361 -15.20466 -14.91378 -14.75863 -14.56137 -14.07574 -13.99525 -13.71542 -13.61129 -13.45865 -12.99023 -12.90047 -12.86189 -12.59278 -12.37040 -12.31026 -12.10469 -11.80037 -11.66944 -11.52159 -11.31482 -11.09742 -10.97028 -10.57564 -10.44563 -9.93687 -8.58150 -7.87934 -5.35492 -0.20274 1.11823 1.32700 1.40958 1.41637 1.43955 1.95965 2.12306 2.41223 3.20091 3.26430 3.53591 3.59563 3.82046 3.95868 4.00417 4.23928 4.27751 4.44745 4.55131 4.62806 4.66816 4.74837 4.78629 4.88691 4.93713 5.01828 5.15619 5.24963 5.26089 5.29602 5.35528 5.47734 5.49481 5.56839 5.63954 5.72182 5.85218 6.39884 6.44523 7.01545 7.12743 7.15399 7.85178 8.38820 9.14800 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.006242 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.212953 B = 4484.401042 C = 5604.168375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.045 3.955 3 N -0.291 5.291 4 N -0.062 5.062 5 N -0.357 5.357 6 H 0.462 0.538 7 C -0.069 4.069 8 C 0.590 3.410 9 O -0.549 6.549 10 N -0.685 5.685 11 C 0.138 3.862 12 C 0.158 3.842 13 H 0.038 0.962 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.600 5.600 19 C -0.234 4.234 20 H 0.063 0.937 21 C -0.024 4.024 22 N -0.918 5.918 23 Si 0.926 3.074 24 H -0.289 1.289 25 H -0.297 1.297 26 H -0.289 1.289 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.003 0.997 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -2.589 7.331 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 N -0.158 5.158 4 N -0.044 5.044 5 N -0.086 5.086 6 H 0.311 0.689 7 C -0.204 4.204 8 C 0.374 3.626 9 O -0.427 6.427 10 N -0.335 5.335 11 C 0.015 3.985 12 C 0.052 3.948 13 H 0.056 0.944 14 C -0.161 4.161 15 C -0.141 4.141 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.365 4.365 20 H 0.080 0.920 21 C -0.221 4.221 22 N -0.563 5.563 23 Si 0.757 3.243 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.215 1.215 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.245 0.755 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.959 -1.386 7.264 9.497 hybrid contribution 0.895 -0.354 -1.356 1.663 sum -5.064 -1.740 5.908 7.973 Atomic orbital electron populations 1.20357 0.83059 1.04569 1.04703 1.22794 0.99812 0.86614 1.00336 1.74863 0.95507 1.26679 1.18706 1.78100 1.16043 0.93025 1.17185 1.45536 1.09493 1.06583 1.46978 0.68868 1.22240 0.85235 0.96809 1.16120 1.16724 0.85885 0.82440 0.77566 1.90755 1.17141 1.82310 1.52537 1.45926 1.09724 1.06514 1.71306 1.21411 0.96865 0.78580 1.01622 1.21028 0.90638 0.93738 0.89418 0.94428 1.21964 0.97797 0.94302 1.02038 1.21347 0.96709 0.99243 0.96784 1.22053 0.99755 0.97809 0.97902 1.20586 0.87864 0.87544 0.98840 1.44236 1.30957 1.34023 1.23238 1.19171 0.91368 1.07868 1.18107 0.91957 1.25367 0.95687 0.99549 1.01537 1.70057 0.99241 1.45338 1.41710 0.86014 0.76377 0.79794 0.82097 1.21536 1.22319 1.21549 0.88474 0.88972 0.89611 0.75479 0.92667 0.89598 0.92663 0.89763 0.90956 0.92397 0.93705 0.92043 0.93294 0.97844 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 9.93 71.24 0.71 -1.00 16 2 C 0.05 1.44 7.30 42.05 0.31 1.74 16 3 N -0.29 -9.94 12.35 -47.88 -0.59 -10.53 16 4 N -0.06 -2.10 13.35 37.02 0.49 -1.61 16 5 N -0.36 -11.15 6.97 -48.52 -0.34 -11.48 16 6 H 0.46 12.75 8.32 -219.89 -1.83 10.92 16 7 C -0.07 -2.27 7.17 40.41 0.29 -1.98 16 8 C 0.59 20.05 7.81 86.61 0.68 20.73 16 9 O -0.55 -20.15 14.99 -4.08 -0.06 -20.21 16 10 N -0.69 -22.57 3.86 -466.56 -1.80 -24.37 16 11 C 0.14 4.36 4.44 86.38 0.38 4.75 16 12 C 0.16 5.13 3.03 45.12 0.14 5.27 16 13 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 14 C -0.12 -3.29 5.40 30.82 0.17 -3.12 16 15 C -0.10 -2.76 5.88 30.62 0.18 -2.58 16 16 C -0.14 -4.47 6.08 30.67 0.19 -4.29 16 17 C 0.18 7.39 5.25 86.36 0.45 7.85 16 18 N -0.60 -24.61 2.96 -674.44 -2.00 -26.61 16 19 C -0.23 -10.73 6.94 84.03 0.58 -10.14 16 20 H 0.06 2.94 5.90 -2.91 -0.02 2.92 16 21 C -0.02 -1.18 5.00 84.86 0.42 -0.76 16 22 N -0.92 -47.18 11.18 21.65 0.24 -46.93 16 23 Si 0.93 42.30 29.57 68.60 2.03 44.33 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.09 2.31 6.62 -2.39 -0.02 2.29 16 30 H 0.41 13.85 6.65 -92.71 -0.62 13.24 16 31 H 0.05 1.95 7.41 -2.38 -0.02 1.93 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 2.40 6.18 -2.39 -0.01 2.38 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.25 12.87 8.31 -92.71 -0.77 12.09 16 Total: -1.00 -57.34 329.73 1.09 -56.25 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -1.38 Total: 24.69 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 4.49 Total: 16.47 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -3.99 Total: -121.54 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -57.34 1.09 -56.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024588448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.150 kcal (2) G-P(sol) polarization free energy of solvation -57.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds