Wall clock time and date at job start Tue Mar 31 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99608 * 2 1 4 4 H 1.48498 * 109.46797 * 239.99566 * 3 2 1 5 5 H 1.48500 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47038 * 119.99829 * 3 2 1 7 7 C 1.38815 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99573 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99688 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47104 * 204.99918 * 10 9 7 12 12 C 1.52994 * 109.47266 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47168 * 59.99898 * 12 11 10 14 14 N 1.46498 * 109.46697 * 59.99893 * 13 12 11 15 15 C 1.34785 * 119.99789 * 155.00267 * 14 13 12 16 16 O 1.21275 * 119.99531 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99823 * 179.97438 * 15 14 13 18 18 N 1.46502 * 109.46829 * 179.97438 * 17 15 14 19 19 N 1.28604 * 124.61494 * 90.00157 * 18 17 15 20 20 C 1.31387 * 108.71396 * 179.97438 * 19 18 17 21 21 C 1.39667 * 105.89980 * 359.97438 * 20 19 18 22 22 N 1.28598 * 124.62248 * 269.97561 * 18 17 15 23 23 C 1.53000 * 109.46870 * 300.00132 * 13 12 11 24 24 C 1.52994 * 109.47334 * 59.99969 * 23 13 12 25 25 H 0.96993 * 120.00605 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00542 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47308 * 324.99407 * 10 9 7 28 28 H 1.08997 * 109.46874 * 59.99508 * 11 10 9 29 29 H 1.09000 * 109.46621 * 299.99909 * 11 10 9 30 30 H 1.08999 * 109.47493 * 300.00256 * 12 11 10 31 31 H 1.08993 * 109.47248 * 179.97438 * 12 11 10 32 32 H 1.08995 * 109.46971 * 179.97438 * 13 12 11 33 33 H 0.97000 * 120.00601 * 334.99591 * 14 13 12 34 34 H 1.08994 * 109.47465 * 59.99940 * 17 15 14 35 35 H 1.09000 * 109.47286 * 299.99318 * 17 15 14 36 36 H 1.07998 * 127.04695 * 179.97438 * 20 19 18 37 37 H 1.08000 * 127.05183 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.46892 * 179.97438 * 23 13 12 39 39 H 1.08999 * 109.47246 * 299.99308 * 23 13 12 40 40 H 1.08999 * 109.47593 * 180.02562 * 24 23 13 41 41 H 1.08999 * 109.47493 * 59.99490 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.1816 -4.7524 -0.6082 12 6 1.9469 -6.0772 -0.6076 13 6 2.3103 -6.4557 0.8297 14 7 1.0859 -6.5986 1.6214 15 6 1.0797 -7.3833 2.7173 16 8 2.0876 -7.9713 3.0476 17 6 -0.1795 -7.5298 3.5319 18 7 0.0713 -8.4287 4.6612 19 7 0.4846 -8.0500 5.8186 20 6 0.6025 -9.1066 6.5907 21 6 0.2212 -10.1978 5.8067 22 7 -0.0922 -9.7039 4.6303 23 6 3.1869 -5.3600 1.4395 24 6 2.4217 -4.0352 1.4389 25 1 -0.4851 0.8399 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 2.9694 -3.5507 -0.5872 28 1 0.9231 -4.4830 -1.6322 29 1 0.2705 -4.8584 -0.0193 30 1 2.8578 -5.9709 -1.1966 31 1 1.3222 -6.8579 -1.0416 32 1 2.8550 -7.3997 0.8302 33 1 0.2797 -6.1284 1.3570 34 1 -0.9705 -7.9442 2.9069 35 1 -0.4861 -6.5529 3.9059 36 1 0.9275 -9.1270 7.6204 37 1 0.1906 -11.2350 6.1060 38 1 3.4454 -5.6294 2.4636 39 1 4.0979 -5.2537 0.8505 40 1 3.0463 -3.2545 1.8729 41 1 1.5107 -4.1415 2.0279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026501678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:34 Heat of formation + Delta-G solvation = 54.503458 kcal Electronic energy + Delta-G solvation = -23477.251408 eV Core-core repulsion = 20007.899824 eV Total energy + Delta-G solvation = -3469.351584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.47050 -41.30704 -39.31946 -36.32987 -34.81129 -34.30614 -33.37522 -32.49704 -31.71304 -29.87680 -28.58908 -25.63507 -23.80166 -23.71484 -23.40865 -22.38400 -21.80856 -20.25779 -19.15974 -18.94174 -18.42537 -17.07355 -16.86834 -16.75970 -16.56657 -16.01616 -15.69061 -15.38694 -15.20613 -15.10535 -14.93324 -14.59418 -13.91443 -13.65886 -13.42258 -13.10856 -13.09409 -12.83282 -12.79010 -12.55788 -12.20900 -12.04000 -12.01781 -11.77964 -11.71700 -11.38491 -11.32410 -11.32097 -11.11813 -10.82437 -10.24792 -10.11874 -8.96962 -7.93381 -5.20003 0.76195 1.25510 1.39480 1.46941 1.48497 1.54486 1.63283 2.17978 2.56578 3.31752 3.39693 3.51351 3.73534 3.85370 3.88907 3.99281 4.03252 4.17778 4.29158 4.32722 4.37718 4.58686 4.59661 4.64885 4.66632 4.80577 5.01674 5.06507 5.09033 5.14995 5.25536 5.29071 5.36029 5.45250 5.52199 5.57932 5.64696 5.67869 6.30263 6.39591 7.05646 7.36548 7.38129 8.14731 8.37023 9.29627 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.003179 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.411441 B = 8804.869262 C = 9353.975927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.736 5.736 10 C 0.172 3.828 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.155 3.845 14 N -0.700 5.700 15 C 0.503 3.497 16 O -0.574 6.574 17 C 0.116 3.884 18 N -0.157 5.157 19 N -0.317 5.317 20 C -0.027 4.027 21 C -0.025 4.025 22 N -0.310 5.310 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.250 0.750 26 H 0.374 0.626 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.230 0.770 37 H 0.233 0.767 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 -20.746 6.292 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.064 3.936 11 C -0.154 4.154 12 C -0.147 4.147 13 C 0.050 3.950 14 N -0.353 5.353 15 C 0.288 3.712 16 O -0.453 6.453 17 C -0.007 4.007 18 N -0.056 5.056 19 N -0.158 5.158 20 C -0.210 4.210 21 C -0.208 4.208 22 N -0.151 5.151 23 C -0.159 4.159 24 C -0.160 4.160 25 H 0.059 0.941 26 H 0.206 0.794 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.254 0.746 34 H 0.188 0.812 35 H 0.175 0.825 36 H 0.246 0.754 37 H 0.250 0.750 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.766 -20.152 5.394 20.876 hybrid contribution 0.071 1.050 0.828 1.339 sum -0.696 -19.103 6.222 20.102 Atomic orbital electron populations 1.69773 1.06313 1.25939 1.59779 1.25442 0.96328 1.00683 1.04159 0.85342 0.77316 0.79910 0.78009 1.20515 1.22188 1.20901 1.19528 0.91213 0.85535 1.40598 0.91262 1.42597 1.05458 1.00882 1.88580 1.20464 0.94442 0.85169 0.93494 1.21705 0.98524 0.94010 1.01163 1.21736 1.02201 0.96782 0.93974 1.20934 0.85022 0.98171 0.90845 1.45943 1.15462 1.47420 1.26458 1.20853 0.89926 0.78841 0.81570 1.90744 1.36081 1.48446 1.70067 1.22009 0.97351 0.96300 0.85088 1.47543 1.45800 1.03426 1.08867 1.74053 1.16769 1.30455 0.94476 1.25457 1.04571 0.87866 1.03135 1.25459 1.03197 1.03408 0.88701 1.73983 1.20829 0.94602 1.25638 1.21831 0.98955 0.94661 1.00433 1.22007 0.99216 0.95384 0.99377 0.94112 0.79402 0.94419 0.91743 0.91400 0.89372 0.88848 0.89910 0.74618 0.81224 0.82516 0.75393 0.75049 0.93794 0.90417 0.95189 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.76 13.06 21.65 0.28 -57.47 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.96 45.80 29.55 68.60 2.03 47.82 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -12.84 9.93 84.03 0.83 -12.01 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.74 -35.01 5.12 -322.93 -1.65 -36.66 16 10 C 0.17 6.17 2.77 44.99 0.12 6.29 16 11 C -0.12 -3.01 5.22 30.59 0.16 -2.85 16 12 C -0.11 -2.12 5.61 30.60 0.17 -1.95 16 13 C 0.15 3.49 2.78 44.99 0.13 3.62 16 14 N -0.70 -14.23 4.23 -442.53 -1.87 -16.10 16 15 C 0.50 12.17 7.86 87.65 0.69 12.85 16 16 O -0.57 -19.43 16.09 -3.01 -0.05 -19.48 16 17 C 0.12 2.11 7.02 85.63 0.60 2.71 16 18 N -0.16 -3.87 3.44 -190.81 -0.66 -4.52 16 19 N -0.32 -8.27 12.05 -56.87 -0.69 -8.96 16 20 C -0.03 -0.53 12.20 85.11 1.04 0.51 16 21 C -0.02 -0.45 12.19 85.11 1.04 0.58 16 22 N -0.31 -7.52 12.05 -56.87 -0.69 -8.21 16 23 C -0.12 -3.32 5.60 30.59 0.17 -3.14 16 24 C -0.12 -4.04 5.35 30.59 0.16 -3.87 16 25 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.37 18.87 7.80 -92.71 -0.72 18.15 16 27 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.61 6.51 -2.39 -0.02 1.59 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 33 H 0.42 6.62 6.87 -92.71 -0.64 5.98 16 34 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.73 7.60 -2.39 -0.02 1.72 16 Total: -1.00 -78.39 340.77 1.99 -76.41 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.31 Total: 28.12 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.58 Total: -0.95 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -5.27 Total: -131.92 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.39 1.99 -76.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026501678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.912 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds