Wall clock time and date at job start Tue Mar 31 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48501 * 109.47370 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.47051 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47544 * 150.00197 * 3 2 1 7 7 C 1.38806 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00372 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99752 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46575 * 204.99582 * 10 9 7 12 12 C 1.53001 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46963 * 60.00501 * 12 11 10 14 14 N 1.46506 * 109.47035 * 59.99511 * 13 12 11 15 15 C 1.34779 * 119.99461 * 155.00115 * 14 13 12 16 16 O 1.21275 * 120.00183 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99413 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.46714 * 179.97438 * 17 15 14 19 19 N 1.33238 * 125.52682 * 269.69103 * 18 17 15 20 20 C 1.30834 * 109.82853 * 179.85920 * 19 18 17 21 21 N 1.34429 * 108.07677 * 0.40263 * 20 19 18 22 22 H 0.97001 * 126.82359 * 179.79930 * 21 20 19 23 23 N 1.30715 * 125.52336 * 90.00398 * 18 17 15 24 24 C 1.53005 * 109.46982 * 300.00007 * 13 12 11 25 25 C 1.52993 * 109.47062 * 84.99901 * 10 9 7 26 26 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 27 27 H 0.96992 * 119.99600 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47074 * 324.99228 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00272 * 11 10 9 30 30 H 1.08992 * 109.47399 * 300.00099 * 11 10 9 31 31 H 1.08992 * 109.47514 * 300.00434 * 12 11 10 32 32 H 1.09004 * 109.47086 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.47312 * 179.97438 * 13 12 11 34 34 H 0.96995 * 119.99814 * 335.00063 * 14 13 12 35 35 H 1.08994 * 109.46865 * 299.99905 * 17 15 14 36 36 H 1.08994 * 109.47394 * 60.00070 * 17 15 14 37 37 H 1.07996 * 125.96364 * 180.13035 * 20 19 18 38 38 H 1.09001 * 109.46812 * 180.02562 * 24 13 12 39 39 H 1.09002 * 109.46935 * 299.99733 * 24 13 12 40 40 H 1.08996 * 109.47340 * 299.99294 * 25 10 9 41 41 H 1.09002 * 109.47726 * 59.99727 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1809 -4.7521 -0.6101 12 6 1.9462 -6.0769 -0.6107 13 6 2.3106 -6.4561 0.8261 14 7 1.0868 -6.5992 1.6187 15 6 1.0815 -7.3844 2.7142 16 8 2.0899 -7.9720 3.0440 17 6 -0.1775 -7.5321 3.5292 18 6 0.0815 -8.4572 4.6903 19 7 -0.0859 -9.7790 4.6795 20 6 0.2315 -10.2761 5.8473 21 7 0.6066 -9.2610 6.6448 22 1 0.8938 -9.3235 7.5692 23 7 0.5013 -8.0922 5.8732 24 6 3.1878 -5.3606 1.4357 25 6 2.4221 -4.0355 1.4364 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0002 28 1 2.9688 -3.5504 -0.5901 29 1 0.9216 -4.4822 -1.6338 30 1 0.2703 -4.8583 -0.0207 31 1 2.8566 -5.9704 -1.2004 32 1 1.3214 -6.8572 -1.0454 33 1 2.8554 -7.4001 0.8258 34 1 0.2805 -6.1289 1.3551 35 1 -0.4846 -6.5556 3.9035 36 1 -0.9684 -7.9467 2.9042 37 1 0.1940 -11.3194 6.1239 38 1 3.4478 -5.6310 2.4592 39 1 4.0983 -5.2541 0.8460 40 1 3.0471 -3.2552 1.8707 41 1 1.5115 -4.1418 2.0260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026589760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:19 Heat of formation + Delta-G solvation = 48.840577 kcal Electronic energy + Delta-G solvation = -23326.889852 eV Core-core repulsion = 19857.292707 eV Total energy + Delta-G solvation = -3469.597145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30157 -40.00769 -37.91507 -34.62444 -33.50849 -32.72008 -31.87435 -30.78922 -30.40156 -29.11897 -27.36450 -23.69887 -23.08494 -22.23726 -21.89951 -20.83278 -20.16038 -18.83294 -18.56566 -17.34863 -17.05351 -15.80601 -15.60648 -15.47297 -15.24286 -14.81585 -14.21107 -13.93412 -13.70728 -13.57738 -13.28363 -13.13982 -12.38208 -12.33904 -12.24818 -12.09895 -11.82476 -11.58394 -10.99387 -10.86023 -10.77397 -10.40202 -10.36750 -10.25878 -10.15700 -10.10115 -10.04306 -9.68282 -9.64255 -9.54934 -8.91341 -8.78742 -6.93080 -5.75298 -3.03292 1.40532 2.42346 2.60167 2.71165 3.36431 3.44406 3.50022 3.51286 3.89018 4.41396 4.59986 4.66980 4.83144 5.04850 5.11370 5.17079 5.22740 5.31985 5.53154 5.60882 5.72834 5.78326 5.91363 5.95758 5.98836 6.05530 6.11997 6.16351 6.30482 6.39547 6.54312 6.55706 6.69355 6.79050 6.79849 7.01600 7.16593 7.59521 7.72312 7.85886 8.29939 8.43944 9.54971 10.13385 10.47758 11.47517 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003120 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.919671 B = 8971.835064 C = 9528.520326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.125 4.125 12 C -0.122 4.122 13 C 0.150 3.850 14 N -0.715 5.715 15 C 0.523 3.477 16 O -0.538 6.538 17 C -0.053 4.053 18 C 0.252 3.748 19 N -0.535 5.535 20 C 0.260 3.740 21 N -0.485 5.485 22 H 0.441 0.559 23 N -0.302 5.302 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.403 0.597 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.222 0.778 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -21.109 8.385 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 C -0.163 4.163 12 C -0.160 4.160 13 C 0.046 3.954 14 N -0.368 5.368 15 C 0.308 3.692 16 O -0.414 6.414 17 C -0.096 4.096 18 C -0.031 4.031 19 N -0.264 5.264 20 C -0.039 4.039 21 N -0.203 5.203 22 H 0.286 0.714 23 N -0.131 5.131 24 C -0.168 4.168 25 C -0.172 4.172 26 H 0.064 0.936 27 H 0.216 0.784 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.239 0.761 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.238 0.762 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.100 -20.808 8.465 22.465 hybrid contribution -0.013 0.906 0.749 1.176 sum -0.113 -19.902 9.214 21.932 Atomic orbital electron populations 1.69652 1.05067 1.25561 1.58004 1.24719 0.95503 0.97619 1.03213 0.86223 0.78690 0.84016 0.77480 1.21782 1.21838 1.20814 1.19242 0.90973 0.84181 1.42264 0.91274 1.42424 1.05707 0.99831 1.88607 1.20230 0.94308 0.85837 0.92861 1.21814 0.98635 0.94260 1.01591 1.21796 1.01497 0.97846 0.94908 1.20964 0.85272 0.98978 0.90228 1.46054 1.14987 1.48358 1.27410 1.20088 0.89372 0.78824 0.80955 1.90705 1.34737 1.46821 1.69182 1.19937 0.98228 0.99216 0.92189 1.23304 0.96590 0.90300 0.92946 1.70347 1.25344 1.08748 1.21912 1.26045 0.94611 0.96664 0.86572 1.48087 1.52328 1.04995 1.14859 0.71353 1.78032 1.24208 1.05689 1.05140 1.21935 0.98373 0.95701 1.00773 1.22216 0.99634 0.94807 1.00539 0.93589 0.78405 0.93602 0.91482 0.92548 0.90437 0.91727 0.90030 0.76140 0.86211 0.85977 0.76169 0.92368 0.91505 0.92228 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.64 5.12 -53.42 -0.27 -17.91 16 10 C 0.18 3.35 2.77 -67.93 -0.19 3.17 16 11 C -0.12 -1.85 5.22 -26.73 -0.14 -1.99 16 12 C -0.12 -1.48 5.61 -26.73 -0.15 -1.63 16 13 C 0.15 1.98 2.78 -67.92 -0.19 1.79 16 14 N -0.72 -8.85 4.23 -53.80 -0.23 -9.08 16 15 C 0.52 7.24 7.79 -10.98 -0.09 7.15 16 16 O -0.54 -9.56 15.70 5.56 0.09 -9.47 16 17 C -0.05 -0.59 6.33 -29.03 -0.18 -0.78 16 18 C 0.25 3.32 6.63 -156.85 -1.04 2.28 16 19 N -0.54 -6.59 11.19 -11.98 -0.13 -6.73 16 20 C 0.26 2.13 13.13 -90.65 -1.19 0.94 16 21 N -0.48 -4.21 7.45 29.53 0.22 -3.99 16 22 H 0.44 2.05 8.96 -182.33 -1.63 0.42 16 23 N -0.30 -4.00 12.80 32.42 0.41 -3.58 16 24 C -0.13 -1.93 5.60 -26.70 -0.15 -2.08 16 25 C -0.13 -2.33 5.35 -26.71 -0.14 -2.48 16 26 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.38 9.83 7.80 -40.82 -0.32 9.51 16 28 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.79 6.51 -51.93 -0.34 0.45 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 34 H 0.40 4.32 6.87 -40.82 -0.28 4.04 16 35 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.98 7.61 -51.93 -0.39 0.58 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -37.01 339.78 -9.93 -46.94 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.13 Total: 9.30 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.70 Total: -0.76 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: 0.72 Total: -68.52 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.01 -9.93 -46.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026589760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.776 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds