Wall clock time and date at job start Tue Mar 31 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48501 * 109.47370 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.47051 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47544 * 150.00197 * 3 2 1 7 7 C 1.38806 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00372 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99752 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46575 * 204.99582 * 10 9 7 12 12 C 1.53001 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46963 * 60.00501 * 12 11 10 14 14 N 1.46506 * 109.47035 * 59.99511 * 13 12 11 15 15 C 1.34779 * 119.99461 * 155.00115 * 14 13 12 16 16 O 1.21275 * 120.00183 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99413 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.46714 * 179.97438 * 17 15 14 19 19 N 1.33238 * 125.52682 * 269.69103 * 18 17 15 20 20 C 1.30834 * 109.82853 * 179.85920 * 19 18 17 21 21 N 1.34429 * 108.07677 * 0.40263 * 20 19 18 22 22 H 0.97001 * 126.82359 * 179.79930 * 21 20 19 23 23 N 1.30715 * 125.52336 * 90.00398 * 18 17 15 24 24 C 1.53005 * 109.46982 * 300.00007 * 13 12 11 25 25 C 1.52993 * 109.47062 * 84.99901 * 10 9 7 26 26 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 27 27 H 0.96992 * 119.99600 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47074 * 324.99228 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00272 * 11 10 9 30 30 H 1.08992 * 109.47399 * 300.00099 * 11 10 9 31 31 H 1.08992 * 109.47514 * 300.00434 * 12 11 10 32 32 H 1.09004 * 109.47086 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.47312 * 179.97438 * 13 12 11 34 34 H 0.96995 * 119.99814 * 335.00063 * 14 13 12 35 35 H 1.08994 * 109.46865 * 299.99905 * 17 15 14 36 36 H 1.08994 * 109.47394 * 60.00070 * 17 15 14 37 37 H 1.07996 * 125.96364 * 180.13035 * 20 19 18 38 38 H 1.09001 * 109.46812 * 180.02562 * 24 13 12 39 39 H 1.09002 * 109.46935 * 299.99733 * 24 13 12 40 40 H 1.08996 * 109.47340 * 299.99294 * 25 10 9 41 41 H 1.09002 * 109.47726 * 59.99727 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1809 -4.7521 -0.6101 12 6 1.9462 -6.0769 -0.6107 13 6 2.3106 -6.4561 0.8261 14 7 1.0868 -6.5992 1.6187 15 6 1.0815 -7.3844 2.7142 16 8 2.0899 -7.9720 3.0440 17 6 -0.1775 -7.5321 3.5292 18 6 0.0815 -8.4572 4.6903 19 7 -0.0859 -9.7790 4.6795 20 6 0.2315 -10.2761 5.8473 21 7 0.6066 -9.2610 6.6448 22 1 0.8938 -9.3235 7.5692 23 7 0.5013 -8.0922 5.8732 24 6 3.1878 -5.3606 1.4357 25 6 2.4221 -4.0355 1.4364 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0002 28 1 2.9688 -3.5504 -0.5901 29 1 0.9216 -4.4822 -1.6338 30 1 0.2703 -4.8583 -0.0207 31 1 2.8566 -5.9704 -1.2004 32 1 1.3214 -6.8572 -1.0454 33 1 2.8554 -7.4001 0.8258 34 1 0.2805 -6.1289 1.3551 35 1 -0.4846 -6.5556 3.9035 36 1 -0.9684 -7.9467 2.9042 37 1 0.1940 -11.3194 6.1239 38 1 3.4478 -5.6310 2.4592 39 1 4.0983 -5.2541 0.8460 40 1 3.0471 -3.2552 1.8707 41 1 1.5115 -4.1418 2.0260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026589760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:18 Heat of formation + Delta-G solvation = 22.114935 kcal Electronic energy + Delta-G solvation = -23328.048763 eV Core-core repulsion = 19857.292707 eV Total energy + Delta-G solvation = -3470.756056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.06432 -41.14331 -39.19994 -36.25872 -34.43067 -34.16031 -32.78158 -32.33570 -31.66306 -30.21160 -28.79633 -25.61169 -23.86090 -23.47934 -22.94624 -22.23771 -21.06798 -20.15785 -19.28766 -19.02935 -18.32937 -16.96486 -16.77056 -16.63576 -16.29043 -16.00924 -15.63284 -15.27092 -15.05006 -14.95409 -14.59353 -14.28108 -13.87335 -13.56429 -13.17734 -13.06975 -13.05805 -13.02524 -12.81166 -12.74951 -12.14854 -11.99909 -11.98251 -11.67043 -11.28587 -11.24369 -11.08101 -11.06629 -10.95684 -10.80333 -10.59776 -9.97464 -8.95014 -7.91827 -5.18412 0.66478 1.47645 1.48251 1.56451 1.65165 1.73758 1.87017 2.42669 2.57801 3.18370 3.41344 3.68399 3.76843 3.84696 3.93915 3.96335 4.18825 4.34626 4.37711 4.42351 4.47021 4.56858 4.63775 4.69831 4.71961 4.86678 5.05392 5.12961 5.19827 5.25225 5.29761 5.33849 5.35753 5.51340 5.60353 5.62874 5.68609 6.27590 6.31950 6.58845 7.10362 7.27299 7.37936 8.16445 8.38852 9.31516 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003120 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.919671 B = 8971.835064 C = 9528.520326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.173 3.827 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.154 3.846 14 N -0.707 5.707 15 C 0.523 3.477 16 O -0.580 6.580 17 C -0.052 4.052 18 C 0.235 3.765 19 N -0.573 5.573 20 C 0.275 3.725 21 N -0.477 5.477 22 H 0.457 0.543 23 N -0.346 5.346 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.274 0.726 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -22.892 8.310 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.154 4.154 12 C -0.147 4.147 13 C 0.049 3.951 14 N -0.360 5.360 15 C 0.309 3.691 16 O -0.460 6.460 17 C -0.093 4.093 18 C -0.048 4.048 19 N -0.302 5.302 20 C -0.023 4.023 21 N -0.196 5.196 22 H 0.306 0.694 23 N -0.176 5.176 24 C -0.158 4.158 25 C -0.160 4.160 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.150 0.850 36 H 0.166 0.834 37 H 0.290 0.710 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.012 -22.618 8.406 24.129 hybrid contribution 0.016 1.356 0.843 1.597 sum 0.005 -21.262 9.249 23.186 Atomic orbital electron populations 1.69789 1.06341 1.25822 1.59917 1.25452 0.96345 1.00715 1.04253 0.85255 0.77678 0.80162 0.77391 1.21412 1.22337 1.19921 1.19572 0.91218 0.85514 1.40359 0.91228 1.42621 1.05466 1.00925 1.88552 1.20460 0.94413 0.85133 0.93509 1.21699 0.98531 0.94105 1.01049 1.21729 1.02073 0.96691 0.94198 1.20899 0.85329 0.98047 0.90814 1.46006 1.15100 1.47904 1.26979 1.20527 0.89635 0.78010 0.80902 1.90679 1.36439 1.48621 1.70281 1.20028 0.97407 0.99951 0.91963 1.23618 0.96813 0.91094 0.93307 1.70335 1.27173 1.08575 1.24102 1.27046 0.91823 0.98262 0.85220 1.48022 1.51931 1.04118 1.15548 0.69448 1.77911 1.25529 1.08214 1.05928 1.21838 0.98893 0.94675 1.00434 1.22006 0.99182 0.95434 0.99329 0.94144 0.79441 0.94357 0.91796 0.91576 0.89433 0.88985 0.89952 0.75012 0.85038 0.83368 0.71030 0.93791 0.90496 0.95225 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.65 13.06 21.65 0.28 -58.36 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.23 -12.94 9.93 84.03 0.83 -12.11 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -35.97 5.12 -322.94 -1.65 -37.63 16 10 C 0.17 6.44 2.77 44.99 0.12 6.56 16 11 C -0.12 -3.22 5.22 30.59 0.16 -3.06 16 12 C -0.11 -2.31 5.61 30.60 0.17 -2.14 16 13 C 0.15 3.77 2.78 44.99 0.13 3.89 16 14 N -0.71 -16.35 4.23 -442.51 -1.87 -18.23 16 15 C 0.52 14.00 7.79 87.66 0.68 14.68 16 16 O -0.58 -20.46 15.70 -3.01 -0.05 -20.51 16 17 C -0.05 -1.10 6.33 29.10 0.18 -0.91 16 18 C 0.24 6.04 6.63 138.63 0.92 6.96 16 19 N -0.57 -13.32 11.19 -191.80 -2.15 -15.47 16 20 C 0.27 3.88 13.13 180.36 2.37 6.25 16 21 N -0.48 -7.62 7.45 -60.49 -0.45 -8.07 16 22 H 0.46 3.56 8.96 -213.09 -1.91 1.65 16 23 N -0.35 -9.03 12.80 -51.33 -0.66 -9.69 16 24 C -0.12 -3.49 5.60 30.61 0.17 -3.32 16 25 C -0.12 -4.22 5.35 30.61 0.16 -4.06 16 26 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.37 19.38 7.80 -92.71 -0.72 18.66 16 28 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.72 6.51 -2.39 -0.02 1.70 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.08 2.12 7.58 -2.39 -0.02 2.10 16 34 H 0.41 8.00 6.87 -92.71 -0.64 7.36 16 35 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.27 0.36 8.06 -2.91 -0.02 0.33 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.79 7.61 -2.39 -0.02 1.77 16 Total: -1.00 -81.56 339.78 -0.34 -81.89 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -2.19 Total: 28.73 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.37 Total: 8.89 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -6.50 Total: -147.45 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.05 Total: -20.51 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -81.56 -0.34 -81.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026589760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.009 kcal (2) G-P(sol) polarization free energy of solvation -81.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds