Wall clock time and date at job start Tue Mar 31 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86801 * 120.00539 * 2 1 4 4 H 1.48494 * 109.47546 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46876 * 300.00175 * 3 2 1 6 6 H 1.48501 * 109.46860 * 59.99455 * 3 2 1 7 7 C 1.38815 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00284 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47433 * 205.00410 * 10 9 7 12 12 C 1.52995 * 109.47548 * 179.97438 * 11 10 9 13 13 C 1.53010 * 109.47003 * 59.99338 * 12 11 10 14 14 N 1.46500 * 109.46911 * 60.00347 * 13 12 11 15 15 C 1.34773 * 119.99722 * 154.99593 * 14 13 12 16 16 O 1.21281 * 120.00442 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99762 * 179.97438 * 15 14 13 18 18 N 1.46500 * 109.47081 * 180.02562 * 17 15 14 19 19 C 1.34429 * 126.81895 * 124.99841 * 18 17 15 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 C 1.52994 * 109.47247 * 300.00463 * 13 12 11 24 24 C 1.52995 * 109.46999 * 85.00003 * 10 9 7 25 25 H 0.97005 * 120.00280 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00366 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46922 * 325.00040 * 10 9 7 28 28 H 1.08997 * 109.47219 * 59.99188 * 11 10 9 29 29 H 1.09001 * 109.46764 * 299.99727 * 11 10 9 30 30 H 1.09001 * 109.46926 * 299.99702 * 12 11 10 31 31 H 1.08996 * 109.47805 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.47151 * 180.02562 * 13 12 11 33 33 H 0.96997 * 120.00182 * 335.00232 * 14 13 12 34 34 H 1.09002 * 109.47196 * 60.00345 * 17 15 14 35 35 H 1.08995 * 109.47509 * 300.00521 * 17 15 14 36 36 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47357 * 179.97438 * 23 13 12 39 39 H 1.09001 * 109.47077 * 299.99877 * 23 13 12 40 40 H 1.09001 * 109.47325 * 299.99883 * 24 10 9 41 41 H 1.08993 * 109.47516 * 60.00014 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.1808 -4.7522 -0.6092 12 6 1.9459 -6.0771 -0.6098 13 6 2.3103 -6.4562 0.8271 14 7 1.0866 -6.5994 1.6197 15 6 1.0812 -7.3846 2.7151 16 8 2.0895 -7.9723 3.0449 17 6 -0.1775 -7.5314 3.5307 18 7 0.0744 -8.4300 4.6600 19 6 -0.1312 -8.1651 5.9618 20 7 0.2168 -9.2213 6.6510 21 6 0.6470 -10.1765 5.8276 22 7 0.5838 -9.7373 4.5981 23 6 3.1875 -5.3609 1.4367 24 6 2.4217 -4.0356 1.4375 25 1 -0.4851 0.8401 0.0004 26 1 0.3555 -2.3881 -0.0002 27 1 2.9686 -3.5506 -0.5889 28 1 0.9215 -4.4822 -1.6328 29 1 0.2701 -4.8584 -0.0197 30 1 2.8564 -5.9705 -1.1995 31 1 1.3208 -6.8575 -1.0437 32 1 2.8558 -7.3999 0.8267 33 1 0.2802 -6.1291 1.3561 34 1 -0.9690 -7.9454 2.9060 35 1 -0.4838 -6.5547 3.9053 36 1 -0.5157 -7.2412 6.3680 37 1 0.9962 -11.1534 6.1279 38 1 3.4467 -5.6307 2.4605 39 1 4.0980 -5.2544 0.8470 40 1 3.0467 -3.2554 1.8718 41 1 1.5111 -4.1418 2.0270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026602633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:11 Heat of formation + Delta-G solvation = 62.956796 kcal Electronic energy + Delta-G solvation = -23425.520242 eV Core-core repulsion = 19956.535223 eV Total energy + Delta-G solvation = -3468.985020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.22060 -40.19499 -38.08601 -34.78107 -34.19857 -32.86166 -31.34945 -30.88754 -30.53113 -28.59802 -27.27714 -23.78846 -22.76191 -22.29836 -22.14178 -21.16717 -20.84766 -18.99662 -17.76709 -17.54775 -17.10476 -16.03972 -15.62251 -15.52123 -15.07185 -14.90327 -14.37892 -14.31671 -13.92447 -13.73155 -13.53678 -13.29946 -12.87330 -12.45515 -12.31750 -12.05105 -11.94060 -11.71067 -11.08240 -10.93859 -10.90533 -10.50011 -10.42713 -10.25380 -10.18605 -10.17118 -9.92183 -9.79460 -9.66879 -9.64408 -9.06901 -8.90846 -7.01832 -5.83279 -3.11594 1.44186 1.97692 2.40874 2.83122 3.01222 3.38564 3.45121 3.46653 4.13801 4.21159 4.43504 4.52792 4.64704 4.69368 4.87460 4.98463 5.04327 5.08698 5.42908 5.47961 5.61385 5.66073 5.78372 5.83163 5.92088 5.99259 6.01098 6.18543 6.25737 6.27349 6.38354 6.42736 6.51287 6.56573 6.66027 6.90004 7.04241 7.35157 7.65518 7.90515 8.04900 8.35752 9.47142 10.04477 10.38823 11.39483 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.003163 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.235061 B = 8849.869029 C = 9453.597402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.151 3.849 14 N -0.713 5.713 15 C 0.500 3.500 16 O -0.516 6.516 17 C 0.108 3.892 18 N -0.368 5.368 19 C 0.256 3.744 20 N -0.546 5.546 21 C 0.190 3.810 22 N -0.290 5.290 23 C -0.129 4.129 24 C -0.131 4.131 25 H 0.254 0.746 26 H 0.382 0.618 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.403 0.597 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.220 0.780 37 H 0.216 0.784 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -16.706 5.292 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.163 4.163 12 C -0.161 4.161 13 C 0.047 3.953 14 N -0.367 5.367 15 C 0.284 3.716 16 O -0.390 6.390 17 C -0.019 4.019 18 N -0.159 5.159 19 C -0.041 4.041 20 N -0.273 5.273 21 C -0.113 4.113 22 N -0.117 5.117 23 C -0.168 4.168 24 C -0.171 4.171 25 H 0.064 0.936 26 H 0.216 0.784 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.238 0.762 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.236 0.764 37 H 0.232 0.768 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.001 -17.385 5.166 18.163 hybrid contribution -0.340 1.588 -0.068 1.626 sum -1.341 -15.796 5.097 16.652 Atomic orbital electron populations 1.69655 1.05089 1.25535 1.57951 1.24724 0.95512 0.97669 1.03082 0.86151 0.78847 0.84217 0.77200 1.20566 1.21873 1.21894 1.19281 0.91014 0.84132 1.42362 0.91197 1.42422 1.05684 0.99829 1.88624 1.20229 0.94373 0.85853 0.92822 1.21815 0.98532 0.94247 1.01679 1.21804 1.01629 0.97861 0.94786 1.20991 0.84984 0.99131 0.90232 1.46050 1.15234 1.48159 1.27262 1.20330 0.89788 0.79763 0.81766 1.90788 1.33914 1.45649 1.68696 1.21641 0.97808 0.94499 0.87913 1.49975 1.47841 1.11436 1.06639 1.26110 0.97371 0.99893 0.80746 1.70534 1.21410 1.00985 1.34403 1.26008 0.98850 1.00185 0.86292 1.78174 1.19129 0.91930 1.22461 1.21939 0.98467 0.95634 1.00753 1.22220 0.99495 0.94817 1.00610 0.93590 0.78432 0.93530 0.91392 0.92662 0.90275 0.91723 0.89914 0.76150 0.86324 0.84944 0.76398 0.76815 0.92427 0.91311 0.92129 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.73 -16.88 5.12 -53.43 -0.27 -17.15 16 10 C 0.18 3.15 2.77 -67.93 -0.19 2.96 16 11 C -0.12 -1.71 5.22 -26.73 -0.14 -1.85 16 12 C -0.12 -1.35 5.61 -26.73 -0.15 -1.50 16 13 C 0.15 1.79 2.78 -67.93 -0.19 1.61 16 14 N -0.71 -7.47 4.23 -53.80 -0.23 -7.69 16 15 C 0.50 5.84 7.83 -10.98 -0.09 5.76 16 16 O -0.52 -8.42 15.39 5.56 0.09 -8.34 16 17 C 0.11 0.85 7.03 -5.19 -0.04 0.82 16 18 N -0.37 -3.98 3.41 -63.81 -0.22 -4.20 16 19 C 0.26 2.45 12.63 -90.65 -1.14 1.31 16 20 N -0.55 -6.49 11.19 -15.83 -0.18 -6.67 16 21 C 0.19 2.21 13.03 -91.81 -1.20 1.01 16 22 N -0.29 -3.87 11.80 29.29 0.35 -3.53 16 23 C -0.13 -1.77 5.60 -26.70 -0.15 -1.92 16 24 C -0.13 -2.14 5.35 -26.70 -0.14 -2.28 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.38 9.40 7.80 -40.82 -0.32 9.08 16 27 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16 33 H 0.40 3.47 6.87 -40.82 -0.28 3.19 16 34 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.22 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.22 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.85 7.61 -51.93 -0.39 0.45 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -35.78 340.13 -9.22 -45.00 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.92 Total: 8.07 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.67 Total: -1.02 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: 0.17 Total: -65.67 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.78 -9.22 -45.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026602633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.959 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds