Wall clock time and date at job start Tue Mar 31 2020 03:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86801 * 120.00539 * 2 1 4 4 H 1.48494 * 109.47546 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46876 * 300.00175 * 3 2 1 6 6 H 1.48501 * 109.46860 * 59.99455 * 3 2 1 7 7 C 1.38815 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00284 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47433 * 205.00410 * 10 9 7 12 12 C 1.52995 * 109.47548 * 179.97438 * 11 10 9 13 13 C 1.53010 * 109.47003 * 59.99338 * 12 11 10 14 14 N 1.46500 * 109.46911 * 60.00347 * 13 12 11 15 15 C 1.34773 * 119.99722 * 154.99593 * 14 13 12 16 16 O 1.21281 * 120.00442 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99762 * 179.97438 * 15 14 13 18 18 N 1.46500 * 109.47081 * 180.02562 * 17 15 14 19 19 C 1.34429 * 126.81895 * 124.99841 * 18 17 15 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 C 1.52994 * 109.47247 * 300.00463 * 13 12 11 24 24 C 1.52995 * 109.46999 * 85.00003 * 10 9 7 25 25 H 0.97005 * 120.00280 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00366 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46922 * 325.00040 * 10 9 7 28 28 H 1.08997 * 109.47219 * 59.99188 * 11 10 9 29 29 H 1.09001 * 109.46764 * 299.99727 * 11 10 9 30 30 H 1.09001 * 109.46926 * 299.99702 * 12 11 10 31 31 H 1.08996 * 109.47805 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.47151 * 180.02562 * 13 12 11 33 33 H 0.96997 * 120.00182 * 335.00232 * 14 13 12 34 34 H 1.09002 * 109.47196 * 60.00345 * 17 15 14 35 35 H 1.08995 * 109.47509 * 300.00521 * 17 15 14 36 36 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47357 * 179.97438 * 23 13 12 39 39 H 1.09001 * 109.47077 * 299.99877 * 23 13 12 40 40 H 1.09001 * 109.47325 * 299.99883 * 24 10 9 41 41 H 1.08993 * 109.47516 * 60.00014 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.1808 -4.7522 -0.6092 12 6 1.9459 -6.0771 -0.6098 13 6 2.3103 -6.4562 0.8271 14 7 1.0866 -6.5994 1.6197 15 6 1.0812 -7.3846 2.7151 16 8 2.0895 -7.9723 3.0449 17 6 -0.1775 -7.5314 3.5307 18 7 0.0744 -8.4300 4.6600 19 6 -0.1312 -8.1651 5.9618 20 7 0.2168 -9.2213 6.6510 21 6 0.6470 -10.1765 5.8276 22 7 0.5838 -9.7373 4.5981 23 6 3.1875 -5.3609 1.4367 24 6 2.4217 -4.0356 1.4375 25 1 -0.4851 0.8401 0.0004 26 1 0.3555 -2.3881 -0.0002 27 1 2.9686 -3.5506 -0.5889 28 1 0.9215 -4.4822 -1.6328 29 1 0.2701 -4.8584 -0.0197 30 1 2.8564 -5.9705 -1.1995 31 1 1.3208 -6.8575 -1.0437 32 1 2.8558 -7.3999 0.8267 33 1 0.2802 -6.1291 1.3561 34 1 -0.9690 -7.9454 2.9060 35 1 -0.4838 -6.5547 3.9053 36 1 -0.5157 -7.2412 6.3680 37 1 0.9962 -11.1534 6.1279 38 1 3.4467 -5.6307 2.4605 39 1 4.0980 -5.2544 0.8470 40 1 3.0467 -3.2554 1.8718 41 1 1.5111 -4.1418 2.0270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026602633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:10 Heat of formation + Delta-G solvation = 39.330363 kcal Electronic energy + Delta-G solvation = -23426.544761 eV Core-core repulsion = 19956.535223 eV Total energy + Delta-G solvation = -3470.009539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.98645 -41.18976 -39.24765 -36.29896 -34.98098 -34.30469 -32.48844 -32.13397 -31.69440 -29.76299 -28.39966 -25.61378 -23.69594 -23.42435 -22.88735 -22.39908 -21.82418 -20.19968 -19.10237 -18.55302 -18.25451 -16.96683 -16.85221 -16.54011 -16.32651 -15.78851 -15.71752 -15.25866 -15.16740 -15.02452 -14.78324 -14.48399 -13.90117 -13.74871 -13.52588 -13.10051 -13.08655 -12.86536 -12.84439 -12.72456 -12.11376 -12.01867 -12.00584 -11.70210 -11.32766 -11.31108 -11.09627 -11.00453 -10.82526 -10.75661 -10.50496 -10.02856 -8.95786 -7.93080 -5.19231 0.69296 1.31840 1.46846 1.48304 1.55135 1.56858 2.03666 2.20171 2.56934 3.40581 3.53056 3.55341 3.72507 3.76345 3.88625 3.90932 4.09845 4.16289 4.31329 4.33942 4.39250 4.42514 4.60581 4.66844 4.68742 4.83462 5.03213 5.09782 5.16292 5.25646 5.26846 5.31528 5.48540 5.50186 5.56817 5.59362 5.66812 5.86845 6.31047 6.52103 7.12884 7.21099 7.37521 8.15428 8.38022 9.30226 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.003163 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.235061 B = 8849.869029 C = 9453.597402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.172 3.828 11 C -0.114 4.114 12 C -0.110 4.110 13 C 0.156 3.844 14 N -0.704 5.704 15 C 0.498 3.502 16 O -0.567 6.567 17 C 0.107 3.893 18 N -0.375 5.375 19 C 0.261 3.739 20 N -0.577 5.577 21 C 0.183 3.817 22 N -0.334 5.334 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.250 0.750 26 H 0.375 0.625 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.414 0.586 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.262 0.738 37 H 0.236 0.764 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -17.184 5.222 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.064 3.936 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.051 3.949 14 N -0.358 5.358 15 C 0.283 3.717 16 O -0.445 6.445 17 C -0.018 4.018 18 N -0.166 5.166 19 C -0.035 4.035 20 N -0.305 5.305 21 C -0.120 4.120 22 N -0.161 5.161 23 C -0.158 4.158 24 C -0.158 4.158 25 H 0.059 0.941 26 H 0.207 0.793 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.164 0.836 35 H 0.191 0.809 36 H 0.278 0.722 37 H 0.252 0.748 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.607 -17.879 5.074 18.654 hybrid contribution -0.106 1.713 -0.041 1.716 sum -1.713 -16.166 5.033 17.018 Atomic orbital electron populations 1.69778 1.06248 1.25751 1.59918 1.25407 0.96318 1.00566 1.04256 0.85229 0.78228 0.80671 0.76608 1.19537 1.22164 1.22246 1.19579 0.91171 0.85514 1.40283 0.91345 1.42600 1.05478 1.00841 1.88562 1.20458 0.94320 0.85145 0.93681 1.21690 0.98567 0.93925 1.01088 1.21728 1.02007 0.96800 0.94260 1.20846 0.85347 0.97928 0.90766 1.45969 1.15133 1.47851 1.26872 1.20987 0.90392 0.78640 0.81672 1.90774 1.36118 1.47666 1.69986 1.21986 0.96141 0.96222 0.87449 1.50126 1.47736 1.10973 1.07730 1.26970 0.95727 1.00550 0.80259 1.70540 1.22661 1.01934 1.35331 1.26510 0.98301 1.01113 0.86037 1.78085 1.20763 0.93700 1.23516 1.21828 0.98811 0.94743 1.00413 1.21994 0.99336 0.95242 0.99202 0.94129 0.79338 0.94728 0.91983 0.91180 0.89743 0.89143 0.90385 0.74770 0.83593 0.80908 0.72199 0.74794 0.93627 0.90882 0.95184 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.49 13.06 21.65 0.28 -56.20 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.23 -12.39 9.93 84.04 0.83 -11.56 16 8 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.74 -33.99 5.12 -322.94 -1.65 -35.64 16 10 C 0.17 5.96 2.77 44.99 0.12 6.08 16 11 C -0.11 -2.88 5.22 30.59 0.16 -2.72 16 12 C -0.11 -2.10 5.61 30.60 0.17 -1.93 16 13 C 0.16 3.39 2.78 44.99 0.13 3.51 16 14 N -0.70 -12.92 4.23 -442.53 -1.87 -14.80 16 15 C 0.50 10.62 7.83 87.66 0.69 11.30 16 16 O -0.57 -18.12 15.39 -3.03 -0.05 -18.17 16 17 C 0.11 1.36 7.03 85.63 0.60 1.96 16 18 N -0.37 -7.37 3.41 -355.80 -1.21 -8.58 16 19 C 0.26 4.42 12.63 180.36 2.28 6.70 16 20 N -0.58 -13.07 11.19 -203.99 -2.28 -15.36 16 21 C 0.18 4.18 13.03 180.76 2.36 6.54 16 22 N -0.33 -8.69 11.80 -61.24 -0.72 -9.41 16 23 C -0.12 -3.14 5.60 30.61 0.17 -2.97 16 24 C -0.12 -3.75 5.35 30.61 0.16 -3.59 16 25 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 26 H 0.37 18.32 7.80 -92.71 -0.72 17.60 16 27 H 0.03 1.28 8.08 -2.39 -0.02 1.27 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.56 6.51 -2.39 -0.02 1.55 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.87 7.58 -2.39 -0.02 1.85 16 33 H 0.41 5.72 6.87 -92.71 -0.64 5.08 16 34 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.17 0.74 8.09 -2.39 -0.02 0.72 16 36 H 0.26 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.24 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.74 7.61 -2.39 -0.02 1.72 16 Total: -1.00 -79.31 340.13 2.35 -76.96 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.31 Total: 24.38 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 8.14 Total: 9.75 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -7.46 Total: -139.98 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.17 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.31 2.35 -76.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026602633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.286 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds