Wall clock time and date at job start Tue Mar 31 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36601 * 126.57696 * 2 1 4 4 C 1.47522 * 125.76988 * 359.97438 * 3 2 1 5 5 O 1.21593 * 120.00199 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99996 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00266 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47479 * 184.66200 * 7 6 4 9 9 H 1.09003 * 109.99808 * 54.40555 * 8 7 6 10 10 C 1.54322 * 109.88159 * 293.31179 * 8 7 6 11 11 C 1.55280 * 103.00693 * 218.46756 * 10 8 7 12 12 C 1.54911 * 101.52761 * 35.36011 * 11 10 8 13 13 N 1.47019 * 109.88241 * 175.50089 * 8 7 6 14 14 C 1.36933 * 125.65189 * 298.33224 * 13 8 7 15 15 H 1.08004 * 119.99871 * 346.29954 * 14 13 8 16 16 C 1.38813 * 120.00231 * 166.29081 * 14 13 8 17 17 N 1.31625 * 119.99899 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00141 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46970 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47083 * 120.00361 * 18 16 14 21 21 H 1.48499 * 109.47355 * 240.00322 * 18 16 14 22 22 N 1.34400 * 108.45645 * 180.24342 * 3 2 1 23 23 N 1.28755 * 109.52282 * 359.58671 * 22 3 2 24 24 N 1.34810 * 126.58248 * 180.02562 * 2 1 3 25 25 C 1.46502 * 126.59732 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47113 * 89.99929 * 1 2 3 27 27 H 1.09004 * 109.46509 * 209.99578 * 1 2 3 28 28 H 1.08994 * 109.47036 * 329.99800 * 1 2 3 29 29 H 0.97002 * 119.99926 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.46997 * 64.65685 * 7 6 4 31 31 H 1.09000 * 109.47147 * 304.66068 * 7 6 4 32 32 H 1.08999 * 110.72020 * 336.74994 * 10 8 7 33 33 H 1.09002 * 110.72347 * 100.02645 * 10 8 7 34 34 H 1.08997 * 110.95433 * 277.33395 * 11 10 8 35 35 H 1.09007 * 111.10123 * 153.44765 * 11 10 8 36 36 H 1.08995 * 110.36280 * 204.23556 * 12 11 10 37 37 H 1.09003 * 110.36701 * 82.02321 * 12 11 10 38 38 H 0.96998 * 119.99971 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46834 * 89.99334 * 25 24 2 40 40 H 1.08997 * 109.47133 * 210.00024 * 25 24 2 41 41 H 1.09005 * 109.46735 * 330.00203 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7815 3.4988 0.0000 7 6 2.3373 4.8948 -0.0011 8 6 3.5528 5.8168 -0.1173 9 1 4.1446 5.5450 -0.9914 10 6 4.4175 5.7083 1.1563 11 6 4.8817 7.1717 1.3892 12 6 3.6371 7.9688 0.9251 13 7 3.1113 7.2148 -0.2275 14 6 2.3399 7.7312 -1.2341 15 1 2.1872 7.1659 -2.1417 16 6 1.7539 8.9811 -1.0882 17 7 1.9402 9.6701 0.0177 18 14 0.7010 9.6852 -2.4611 19 1 0.6483 8.7205 -3.5888 20 1 -0.6734 9.9300 -1.9550 21 1 1.2907 10.9646 -2.9308 22 7 3.5984 0.6790 -0.0054 23 7 3.6299 -0.6082 0.0000 24 7 2.3105 -1.0825 -0.0005 25 6 1.8866 -2.4849 -0.0016 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 3.7291 3.2914 0.0004 30 1 1.8069 5.1081 0.9271 31 1 1.6712 5.0635 -0.8472 32 1 3.8216 5.3560 1.9982 33 1 5.2728 5.0541 0.9872 34 1 5.7492 7.4082 0.7732 35 1 5.0915 7.3538 2.4433 36 1 3.9232 8.9756 0.6210 37 1 2.8945 8.0105 1.7219 38 1 1.5311 10.5437 0.1196 39 1 1.7817 -2.8318 -1.0296 40 1 2.6331 -3.0905 0.5120 41 1 0.9293 -2.5754 0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027802332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:04 Heat of formation + Delta-G solvation = 55.779037 kcal Electronic energy + Delta-G solvation = -23428.073925 eV Core-core repulsion = 19958.777654 eV Total energy + Delta-G solvation = -3469.296271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.31040 -40.56439 -39.20410 -36.11263 -35.57227 -34.37921 -33.32318 -31.47104 -30.62317 -28.91557 -28.33561 -26.72795 -25.79815 -24.10770 -22.12243 -21.96263 -21.43654 -21.10114 -19.25399 -18.49975 -17.49531 -17.36252 -16.91134 -16.59764 -16.17058 -15.93657 -15.63213 -15.25531 -14.83794 -14.65435 -14.22480 -14.11888 -13.97832 -13.92576 -13.64293 -13.40204 -13.24882 -13.01586 -12.98054 -12.84573 -12.68815 -12.21048 -11.96820 -11.86171 -11.68513 -11.46737 -11.40179 -11.19475 -11.11226 -10.68052 -10.34554 -9.97667 -8.85530 -7.86668 -5.24416 0.09703 0.58307 1.12225 1.45559 1.47209 1.57123 2.11347 2.21152 2.51057 3.16168 3.32358 3.43855 3.61271 3.70950 3.80150 3.96614 4.00200 4.25984 4.31645 4.39624 4.45875 4.54877 4.60216 4.65355 4.67547 4.74023 4.85609 4.96336 5.00079 5.07754 5.15349 5.22245 5.34252 5.48377 5.51128 5.57197 5.67830 5.79461 6.24167 6.44735 6.88779 7.10398 7.15326 7.76947 8.43142 9.24141 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.003550 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.506681 B = 7884.698261 C = 8780.331198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.130 4.130 4 C 0.597 3.403 5 O -0.567 6.567 6 N -0.699 5.699 7 C 0.131 3.869 8 C 0.147 3.853 9 H 0.046 0.954 10 C -0.115 4.115 11 C -0.133 4.133 12 C 0.174 3.826 13 N -0.610 5.610 14 C -0.239 4.239 15 H 0.076 0.924 16 C -0.060 4.060 17 N -0.945 5.945 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.289 1.289 22 N -0.221 5.221 23 N -0.090 5.090 24 N -0.352 5.352 25 C 0.072 3.928 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.414 0.586 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.039 0.961 37 H -0.006 1.006 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -25.642 2.035 25.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.270 4.270 4 C 0.383 3.617 5 O -0.446 6.446 6 N -0.349 5.349 7 C 0.005 3.995 8 C 0.040 3.960 9 H 0.064 0.936 10 C -0.153 4.153 11 C -0.171 4.171 12 C 0.049 3.951 13 N -0.334 5.334 14 C -0.368 4.368 15 H 0.094 0.906 16 C -0.253 4.253 17 N -0.593 5.593 18 Si 0.801 3.199 19 H -0.193 1.193 20 H -0.220 1.220 21 H -0.216 1.216 22 N -0.094 5.094 23 N -0.070 5.070 24 N -0.138 5.138 25 C -0.066 4.066 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.108 0.892 29 H 0.250 0.750 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.012 0.988 38 H 0.057 0.943 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.162 -25.701 1.979 25.803 hybrid contribution -1.270 1.037 -0.628 1.756 sum -0.108 -24.664 1.351 24.701 Atomic orbital electron populations 1.20822 0.82419 1.06227 1.05632 1.22299 0.97398 0.85834 0.95237 1.21161 0.89802 0.95126 1.20948 1.17053 0.85347 0.83340 0.75996 1.90749 1.17018 1.84216 1.52640 1.45711 1.10451 1.05476 1.73301 1.21760 0.98577 0.78992 1.00142 1.21302 0.92605 0.84408 0.97673 0.93624 1.22631 0.99295 0.97354 0.96041 1.22898 0.97618 0.95284 1.01328 1.21284 0.91472 0.94685 0.87676 1.44748 1.59716 1.03756 1.25229 1.19338 1.21965 1.00749 0.94746 0.90645 1.25672 1.01323 0.98670 0.99658 1.70151 1.48578 1.13323 1.27279 0.85093 0.78048 0.77992 0.78722 1.19255 1.21987 1.21591 1.74543 1.19532 1.04907 1.10463 1.81859 0.97899 1.02982 1.24239 1.50597 1.05157 1.09322 1.48743 1.22738 1.04224 0.73023 1.06656 0.87835 0.86586 0.89228 0.74980 0.93704 0.93923 0.91394 0.88341 0.91282 0.89750 0.94297 0.98768 0.94288 0.87316 0.86890 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.57 71.24 0.68 -0.65 16 2 C 0.13 2.75 7.02 41.72 0.29 3.04 16 3 C -0.13 -3.71 6.99 40.82 0.29 -3.43 16 4 C 0.60 20.35 7.82 86.69 0.68 21.02 16 5 O -0.57 -22.06 14.72 -4.01 -0.06 -22.12 16 6 N -0.70 -23.42 5.40 -466.29 -2.52 -25.93 16 7 C 0.13 5.33 5.09 86.38 0.44 5.77 16 8 C 0.15 5.99 3.22 45.34 0.15 6.14 16 9 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 10 C -0.12 -3.80 6.07 31.83 0.19 -3.60 16 11 C -0.13 -4.80 7.10 32.03 0.23 -4.57 16 12 C 0.17 8.62 5.42 86.86 0.47 9.09 16 13 N -0.61 -31.43 3.13 -668.26 -2.09 -33.52 16 14 C -0.24 -13.57 9.73 84.03 0.82 -12.75 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.06 -3.45 5.47 84.86 0.46 -2.98 16 17 N -0.95 -57.46 10.54 21.65 0.23 -57.23 16 18 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 N -0.22 -6.36 12.04 -49.99 -0.60 -6.97 16 23 N -0.09 -2.24 13.78 37.02 0.51 -1.73 16 24 N -0.35 -6.05 4.03 -355.09 -1.43 -7.48 16 25 C 0.07 0.31 11.33 127.77 1.45 1.76 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.12 0.64 7.18 -2.39 -0.02 0.62 16 28 H 0.09 1.83 6.43 -2.39 -0.02 1.82 16 29 H 0.41 12.12 7.93 -92.71 -0.74 11.39 16 30 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 31 H 0.04 1.98 7.86 -2.39 -0.02 1.96 16 32 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 33 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.04 2.17 6.86 -2.39 -0.02 2.15 16 37 H -0.01 -0.31 8.08 -2.39 -0.02 -0.33 16 38 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 39 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.13 -0.20 7.16 -2.38 -0.02 -0.22 16 Total: -1.00 -77.35 339.80 2.52 -74.83 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.31 Total: 12.41 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.15 Total: 18.85 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -5.90 Total: -132.87 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.12 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.35 2.52 -74.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027802332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.604 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds