Wall clock time and date at job start Tue Mar 31 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.57793 * 2 1 4 4 C 1.47522 * 125.77241 * 359.97438 * 3 2 1 5 5 O 1.21589 * 119.99931 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00044 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47171 * 185.08699 * 7 6 4 9 9 H 1.09001 * 109.87655 * 303.56457 * 8 7 6 10 10 C 1.54326 * 109.87875 * 64.57450 * 8 7 6 11 11 C 1.55157 * 102.94402 * 141.60853 * 10 8 7 12 12 C 1.54911 * 101.57905 * 324.50270 * 11 10 8 13 13 N 1.47020 * 109.88203 * 182.38161 * 8 7 6 14 14 C 1.36936 * 125.65196 * 61.61175 * 13 8 7 15 15 H 1.08001 * 119.99546 * 13.60038 * 14 13 8 16 16 C 1.38809 * 120.00351 * 193.60297 * 14 13 8 17 17 N 1.31626 * 119.99794 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46865 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47256 * 119.99762 * 18 16 14 21 21 H 1.48500 * 109.47198 * 240.00195 * 18 16 14 22 22 N 1.34402 * 108.45628 * 180.24545 * 3 2 1 23 23 N 1.28761 * 109.52312 * 359.58872 * 22 3 2 24 24 N 1.34811 * 126.58181 * 180.02562 * 2 1 3 25 25 C 1.46502 * 126.59191 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.47493 * 89.99297 * 1 2 3 27 27 H 1.08996 * 109.47147 * 209.99841 * 1 2 3 28 28 H 1.09009 * 109.47285 * 329.99306 * 1 2 3 29 29 H 0.96998 * 119.99706 * 359.97438 * 6 4 3 30 30 H 1.09006 * 109.47108 * 65.09089 * 7 6 4 31 31 H 1.08999 * 109.47523 * 305.09305 * 7 6 4 32 32 H 1.08998 * 110.72060 * 259.97476 * 10 8 7 33 33 H 1.09005 * 110.72244 * 23.24990 * 10 8 7 34 34 H 1.09005 * 111.00448 * 82.56662 * 11 10 8 35 35 H 1.08996 * 111.00769 * 206.42617 * 11 10 8 36 36 H 1.09003 * 110.36391 * 278.16714 * 12 11 10 37 37 H 1.09005 * 110.36777 * 155.85235 * 12 11 10 38 38 H 0.96998 * 119.99756 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.47669 * 90.00161 * 25 24 2 40 40 H 1.09005 * 109.47005 * 209.99836 * 25 24 2 41 41 H 1.08997 * 109.46948 * 329.99379 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 0.0000 7 6 2.3375 4.8948 -0.0011 8 6 3.5522 5.8164 -0.1280 9 1 4.2590 5.6108 0.6759 10 6 4.2348 5.5996 -1.4950 11 6 4.6551 7.0357 -1.9053 12 6 3.4806 7.8756 -1.3442 13 7 3.1219 7.2211 -0.0728 14 6 2.4918 7.8220 0.9841 15 1 2.4658 7.3324 1.9464 16 6 1.8864 9.0601 0.8186 17 7 1.9184 9.6568 -0.3541 18 14 1.0274 9.8800 2.2606 19 1 1.1327 9.0097 3.4594 20 1 1.6704 11.1889 2.5406 21 1 -0.4042 10.0927 1.9282 22 7 3.5983 0.6789 -0.0055 23 7 3.6298 -0.6083 -0.0001 24 7 2.3104 -1.0825 -0.0005 25 6 1.8863 -2.4848 -0.0016 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5140 29 1 3.7292 3.2913 0.0012 30 1 1.8138 5.1102 0.9304 31 1 1.6652 5.0616 -0.8427 32 1 5.1088 4.9566 -1.3919 33 1 3.5311 5.1831 -2.2158 34 1 5.5967 7.3170 -1.4336 35 1 4.7195 7.1293 -2.9893 36 1 2.6361 7.8546 -2.0331 37 1 3.7999 8.9024 -1.1655 38 1 1.4957 10.5222 -0.4696 39 1 1.7815 -2.8320 -1.0295 40 1 2.6329 -3.0906 0.5120 41 1 0.9292 -2.5753 0.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027802333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:09 Heat of formation + Delta-G solvation = 80.895700 kcal Electronic energy + Delta-G solvation = -23436.152263 eV Core-core repulsion = 19967.945133 eV Total energy + Delta-G solvation = -3468.207131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.37207 -39.15485 -37.52499 -35.18751 -34.14938 -32.46034 -32.42014 -29.77663 -29.02380 -27.87224 -27.67181 -24.93804 -24.12684 -22.87692 -21.17880 -20.44026 -20.02937 -19.47156 -17.96738 -16.67717 -16.60117 -16.06371 -15.65802 -14.93124 -14.75825 -14.38531 -14.31931 -13.87903 -13.77910 -13.65078 -13.27174 -13.21808 -12.88480 -12.75903 -12.07622 -12.02211 -11.83891 -11.68748 -11.31383 -11.25156 -10.90712 -10.77583 -10.40834 -10.17776 -10.06307 -9.94560 -9.79809 -9.71790 -9.63141 -9.26372 -8.60805 -8.52058 -6.80741 -5.72881 -3.09217 0.97259 1.70428 1.82884 3.40083 3.44637 3.46295 3.48899 3.50723 4.06115 4.12607 4.42460 4.51441 4.56297 4.69238 4.84603 5.07461 5.24075 5.38582 5.46008 5.47160 5.55407 5.62797 5.68416 5.82365 5.88137 6.12954 6.19596 6.21137 6.33124 6.52478 6.59746 6.68511 6.76244 6.86769 7.11818 7.57104 7.64854 7.69680 7.83519 7.95536 8.29234 8.47365 9.21272 9.81806 10.49220 11.38869 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003508 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.078835 B = 7979.922624 C = 8775.187044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.099 4.099 4 C 0.597 3.403 5 O -0.540 6.540 6 N -0.705 5.705 7 C 0.110 3.890 8 C 0.151 3.849 9 H 0.039 0.961 10 C -0.127 4.127 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.589 5.589 14 C -0.231 4.231 15 H 0.077 0.923 16 C -0.003 4.003 17 N -0.916 5.916 18 Si 0.911 3.089 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 N -0.202 5.202 23 N -0.073 5.073 24 N -0.368 5.368 25 C 0.088 3.912 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.404 0.596 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -22.618 -1.509 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.239 4.239 4 C 0.380 3.620 5 O -0.417 6.417 6 N -0.355 5.355 7 C -0.015 4.015 8 C 0.043 3.957 9 H 0.057 0.943 10 C -0.165 4.165 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.359 4.359 15 H 0.095 0.905 16 C -0.200 4.200 17 N -0.562 5.562 18 Si 0.741 3.259 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.216 1.216 22 N -0.075 5.075 23 N -0.052 5.052 24 N -0.154 5.154 25 C -0.053 4.053 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.238 0.762 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.611 -22.593 -1.464 22.648 hybrid contribution -1.069 0.283 0.683 1.300 sum -0.458 -22.310 -0.781 22.328 Atomic orbital electron populations 1.20725 0.84629 1.05369 1.04663 1.21938 0.96267 0.86327 0.97240 1.21404 0.88834 0.95820 1.17875 1.16741 0.85829 0.82329 0.77054 1.90765 1.15927 1.83512 1.51520 1.45939 1.09815 1.06783 1.72968 1.22302 0.99469 0.77100 1.02659 1.21131 0.92807 0.86418 0.95348 0.94329 1.22611 0.99312 0.97493 0.97057 1.23009 1.00394 0.95939 0.99381 1.21476 0.91731 0.96021 0.86067 1.44501 1.68815 1.02712 1.15303 1.19052 1.27106 1.01099 0.88687 0.90537 1.24900 0.99822 0.98387 0.96893 1.69955 1.48134 1.16528 1.21630 0.86067 0.79258 0.79123 0.81459 1.20377 1.21767 1.21644 1.74591 1.19217 1.04039 1.09647 1.81971 0.95945 1.03560 1.23761 1.50256 1.06540 1.07687 1.50946 1.22135 1.02366 0.76190 1.04608 0.89010 0.90859 0.86767 0.76203 0.91287 0.91321 0.92225 0.91842 0.92297 0.92380 0.95700 0.90766 0.93705 0.89336 0.88157 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.57 36.00 0.34 -0.46 16 2 C 0.12 1.37 7.02 -81.88 -0.57 0.80 16 3 C -0.10 -1.45 6.99 -83.55 -0.58 -2.04 16 4 C 0.60 10.08 7.82 -12.48 -0.10 9.99 16 5 O -0.54 -10.27 14.71 5.29 0.08 -10.19 16 6 N -0.71 -11.79 5.32 -61.35 -0.33 -12.12 16 7 C 0.11 2.17 5.07 -4.04 -0.02 2.15 16 8 C 0.15 3.09 3.22 -66.95 -0.22 2.87 16 9 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 10 C -0.13 -2.23 6.10 -24.90 -0.15 -2.38 16 11 C -0.15 -2.81 7.09 -24.58 -0.17 -2.98 16 12 C 0.17 4.16 5.43 -2.53 -0.01 4.14 16 13 N -0.59 -14.81 3.13 -162.57 -0.51 -15.32 16 14 C -0.23 -6.37 9.77 -15.06 -0.15 -6.52 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 17 N -0.92 -26.79 10.53 55.49 0.58 -26.21 16 18 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 N -0.20 -2.99 12.04 32.85 0.40 -2.60 16 23 N -0.07 -0.97 13.78 60.35 0.83 -0.14 16 24 N -0.37 -3.68 4.03 -63.59 -0.26 -3.94 16 25 C 0.09 0.37 11.33 59.85 0.68 1.05 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.37 7.18 -51.93 -0.37 0.00 16 28 H 0.11 1.23 6.43 -51.92 -0.33 0.90 16 29 H 0.40 6.08 8.02 -40.82 -0.33 5.75 16 30 H 0.07 1.51 7.92 -51.93 -0.41 1.10 16 31 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.11 7.81 -51.93 -0.41 0.70 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.07 1.99 6.85 -51.93 -0.36 1.64 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.18 7.16 -51.93 -0.37 -0.19 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -33.64 339.96 -6.08 -39.71 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.92 Total: 2.05 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.05 Total: 6.44 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.72 Total: -60.32 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.64 -6.08 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027802333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.609 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds