Wall clock time and date at job start Tue Mar 31 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.57793 * 2 1 4 4 C 1.47522 * 125.77241 * 359.97438 * 3 2 1 5 5 O 1.21589 * 119.99931 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00044 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47171 * 185.08699 * 7 6 4 9 9 H 1.09001 * 109.87655 * 303.56457 * 8 7 6 10 10 C 1.54326 * 109.87875 * 64.57450 * 8 7 6 11 11 C 1.55157 * 102.94402 * 141.60853 * 10 8 7 12 12 C 1.54911 * 101.57905 * 324.50270 * 11 10 8 13 13 N 1.47020 * 109.88203 * 182.38161 * 8 7 6 14 14 C 1.36936 * 125.65196 * 61.61175 * 13 8 7 15 15 H 1.08001 * 119.99546 * 13.60038 * 14 13 8 16 16 C 1.38809 * 120.00351 * 193.60297 * 14 13 8 17 17 N 1.31626 * 119.99794 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46865 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47256 * 119.99762 * 18 16 14 21 21 H 1.48500 * 109.47198 * 240.00195 * 18 16 14 22 22 N 1.34402 * 108.45628 * 180.24545 * 3 2 1 23 23 N 1.28761 * 109.52312 * 359.58872 * 22 3 2 24 24 N 1.34811 * 126.58181 * 180.02562 * 2 1 3 25 25 C 1.46502 * 126.59191 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.47493 * 89.99297 * 1 2 3 27 27 H 1.08996 * 109.47147 * 209.99841 * 1 2 3 28 28 H 1.09009 * 109.47285 * 329.99306 * 1 2 3 29 29 H 0.96998 * 119.99706 * 359.97438 * 6 4 3 30 30 H 1.09006 * 109.47108 * 65.09089 * 7 6 4 31 31 H 1.08999 * 109.47523 * 305.09305 * 7 6 4 32 32 H 1.08998 * 110.72060 * 259.97476 * 10 8 7 33 33 H 1.09005 * 110.72244 * 23.24990 * 10 8 7 34 34 H 1.09005 * 111.00448 * 82.56662 * 11 10 8 35 35 H 1.08996 * 111.00769 * 206.42617 * 11 10 8 36 36 H 1.09003 * 110.36391 * 278.16714 * 12 11 10 37 37 H 1.09005 * 110.36777 * 155.85235 * 12 11 10 38 38 H 0.96998 * 119.99756 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.47669 * 90.00161 * 25 24 2 40 40 H 1.09005 * 109.47005 * 209.99836 * 25 24 2 41 41 H 1.08997 * 109.46948 * 329.99379 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 0.0000 7 6 2.3375 4.8948 -0.0011 8 6 3.5522 5.8164 -0.1280 9 1 4.2590 5.6108 0.6759 10 6 4.2348 5.5996 -1.4950 11 6 4.6551 7.0357 -1.9053 12 6 3.4806 7.8756 -1.3442 13 7 3.1219 7.2211 -0.0728 14 6 2.4918 7.8220 0.9841 15 1 2.4658 7.3324 1.9464 16 6 1.8864 9.0601 0.8186 17 7 1.9184 9.6568 -0.3541 18 14 1.0274 9.8800 2.2606 19 1 1.1327 9.0097 3.4594 20 1 1.6704 11.1889 2.5406 21 1 -0.4042 10.0927 1.9282 22 7 3.5983 0.6789 -0.0055 23 7 3.6298 -0.6083 -0.0001 24 7 2.3104 -1.0825 -0.0005 25 6 1.8863 -2.4848 -0.0016 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5140 29 1 3.7292 3.2913 0.0012 30 1 1.8138 5.1102 0.9304 31 1 1.6652 5.0616 -0.8427 32 1 5.1088 4.9566 -1.3919 33 1 3.5311 5.1831 -2.2158 34 1 5.5967 7.3170 -1.4336 35 1 4.7195 7.1293 -2.9893 36 1 2.6361 7.8546 -2.0331 37 1 3.7999 8.9024 -1.1655 38 1 1.4957 10.5222 -0.4696 39 1 1.7815 -2.8320 -1.0295 40 1 2.6329 -3.0906 0.5120 41 1 0.9292 -2.5753 0.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027802333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:07 Heat of formation + Delta-G solvation = 55.961668 kcal Electronic energy + Delta-G solvation = -23437.233484 eV Core-core repulsion = 19967.945133 eV Total energy + Delta-G solvation = -3469.288351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.30836 -40.56728 -39.20604 -36.11104 -35.57130 -34.37887 -33.32178 -31.47659 -30.61855 -28.91288 -28.33396 -26.73290 -25.79584 -24.10634 -22.11029 -21.95884 -21.46201 -21.09677 -19.25851 -18.47214 -17.47715 -17.37349 -16.91001 -16.58323 -16.20501 -15.92975 -15.64807 -15.24006 -14.83292 -14.68868 -14.23487 -14.09774 -13.98206 -13.91411 -13.64894 -13.40523 -13.24143 -12.99293 -12.96706 -12.84413 -12.67578 -12.20913 -11.96562 -11.86177 -11.72170 -11.47736 -11.40671 -11.19541 -11.10867 -10.67728 -10.33900 -9.96588 -8.85852 -7.86319 -5.24167 0.09902 0.58512 1.12383 1.45933 1.47527 1.57412 2.11503 2.21333 2.51293 3.16343 3.32727 3.43939 3.61436 3.70877 3.80700 3.96932 3.99186 4.25664 4.31842 4.39998 4.47131 4.54188 4.60284 4.65563 4.67614 4.73698 4.85635 4.95839 4.99610 5.07612 5.15034 5.21507 5.34586 5.48424 5.51262 5.57289 5.67654 5.79094 6.24142 6.44937 6.88933 7.10408 7.15512 7.77044 8.43316 9.24513 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003508 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.078835 B = 7979.922624 C = 8775.187044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.130 4.130 4 C 0.598 3.402 5 O -0.567 6.567 6 N -0.698 5.698 7 C 0.131 3.869 8 C 0.148 3.852 9 H 0.048 0.952 10 C -0.114 4.114 11 C -0.133 4.133 12 C 0.174 3.826 13 N -0.610 5.610 14 C -0.239 4.239 15 H 0.077 0.923 16 C -0.060 4.060 17 N -0.946 5.946 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.293 1.293 22 N -0.221 5.221 23 N -0.090 5.090 24 N -0.352 5.352 25 C 0.072 3.928 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.414 0.586 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.083 0.917 36 H -0.007 1.007 37 H 0.039 0.961 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.375 -25.787 -1.320 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.270 4.270 4 C 0.383 3.617 5 O -0.446 6.446 6 N -0.349 5.349 7 C 0.005 3.995 8 C 0.040 3.960 9 H 0.066 0.934 10 C -0.152 4.152 11 C -0.172 4.172 12 C 0.049 3.951 13 N -0.334 5.334 14 C -0.368 4.368 15 H 0.095 0.905 16 C -0.254 4.254 17 N -0.594 5.594 18 Si 0.802 3.198 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.220 1.220 22 N -0.094 5.094 23 N -0.070 5.070 24 N -0.138 5.138 25 C -0.066 4.066 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.250 0.750 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.011 0.989 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.940 -25.841 -1.269 25.889 hybrid contribution -1.189 1.085 0.629 1.728 sum -0.249 -24.756 -0.640 24.766 Atomic orbital electron populations 1.20821 0.82425 1.06184 1.05671 1.22295 0.97394 0.85834 0.95246 1.21161 0.89795 0.95128 1.20937 1.17044 0.85336 0.83325 0.75995 1.90748 1.17018 1.84212 1.52649 1.45703 1.10446 1.05462 1.73293 1.21755 0.98534 0.79007 1.00162 1.21301 0.92949 0.84106 0.97622 0.93430 1.22587 1.00406 0.97290 0.94919 1.22880 0.98216 0.95295 1.00766 1.21286 0.92727 0.95495 0.85584 1.44749 1.68701 1.05050 1.14933 1.19355 1.26608 1.01218 0.89595 0.90500 1.25679 1.01080 0.99272 0.99358 1.70155 1.49213 1.16610 1.23414 0.85086 0.77637 0.78097 0.78987 1.19168 1.21636 1.22041 1.74547 1.19535 1.04902 1.10461 1.81862 0.97895 1.02988 1.24250 1.50596 1.05159 1.09321 1.48743 1.22736 1.04190 0.73029 1.06688 0.87724 0.86645 0.89285 0.74992 0.94039 0.93662 0.88411 0.91650 0.91207 0.89863 0.98859 0.94214 0.94307 0.87233 0.86938 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.57 71.23 0.68 -0.64 16 2 C 0.13 2.74 7.02 41.72 0.29 3.03 16 3 C -0.13 -3.69 6.99 40.82 0.29 -3.41 16 4 C 0.60 20.27 7.82 86.69 0.68 20.94 16 5 O -0.57 -21.97 14.71 -4.00 -0.06 -22.03 16 6 N -0.70 -23.33 5.32 -466.28 -2.48 -25.81 16 7 C 0.13 5.33 5.07 86.38 0.44 5.76 16 8 C 0.15 5.99 3.22 45.34 0.15 6.14 16 9 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 10 C -0.11 -3.79 6.10 31.78 0.19 -3.60 16 11 C -0.13 -4.84 7.09 31.99 0.23 -4.62 16 12 C 0.17 8.66 5.43 86.86 0.47 9.13 16 13 N -0.61 -31.38 3.13 -668.25 -2.09 -33.47 16 14 C -0.24 -13.51 9.77 84.03 0.82 -12.68 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.06 -3.48 5.47 84.86 0.46 -3.02 16 17 N -0.95 -57.51 10.53 21.65 0.23 -57.28 16 18 Si 0.97 46.77 29.55 68.60 2.03 48.79 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 22 N -0.22 -6.35 12.04 -49.99 -0.60 -6.95 16 23 N -0.09 -2.24 13.78 37.02 0.51 -1.73 16 24 N -0.35 -6.03 4.03 -355.10 -1.43 -7.46 16 25 C 0.07 0.31 11.33 127.77 1.45 1.76 16 26 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.12 0.64 7.18 -2.39 -0.02 0.62 16 28 H 0.09 1.83 6.43 -2.38 -0.02 1.81 16 29 H 0.41 12.11 8.02 -92.71 -0.74 11.36 16 30 H 0.04 1.89 7.92 -2.38 -0.02 1.87 16 31 H 0.04 2.03 8.08 -2.39 -0.02 2.02 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 2.17 7.81 -2.38 -0.02 2.15 16 34 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H -0.01 -0.37 8.08 -2.39 -0.02 -0.39 16 37 H 0.04 2.22 6.85 -2.38 -0.02 2.20 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.13 -0.19 7.16 -2.39 -0.02 -0.21 16 Total: -1.00 -77.17 339.96 2.55 -74.62 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.31 Total: 12.53 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.15 Total: 18.80 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -5.87 Total: -132.71 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -77.17 2.55 -74.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027802333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.577 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds