Wall clock time and date at job start Tue Mar 31 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57770 * 2 1 4 4 C 1.47527 * 125.77368 * 359.97438 * 3 2 1 5 5 O 1.21592 * 119.99746 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99754 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.64140 * 305.69956 * 8 7 6 10 10 C 1.55156 * 110.72546 * 182.55775 * 8 7 6 11 11 C 1.54901 * 101.58691 * 206.13627 * 10 8 7 12 12 N 1.47432 * 104.83094 * 37.00621 * 11 10 8 13 13 C 1.36938 * 125.64779 * 155.90940 * 12 11 10 14 14 H 1.08001 * 120.00067 * 179.97438 * 13 12 11 15 15 C 1.38812 * 120.00002 * 359.97149 * 13 12 11 16 16 N 1.31622 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00271 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47015 * 120.00081 * 17 15 13 20 20 H 1.48503 * 109.47097 * 240.00338 * 17 15 13 21 21 C 1.47318 * 108.73760 * 335.71623 * 12 11 10 22 22 N 1.34405 * 108.45669 * 180.24360 * 3 2 1 23 23 N 1.28762 * 109.52007 * 359.58209 * 22 3 2 24 24 N 1.34817 * 126.58216 * 179.97438 * 2 1 3 25 25 C 1.46495 * 126.59072 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47210 * 90.00175 * 1 2 3 27 27 H 1.08994 * 109.47174 * 210.00139 * 1 2 3 28 28 H 1.09001 * 109.47013 * 330.00226 * 1 2 3 29 29 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 30 30 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 31 31 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 32 32 H 1.09007 * 111.00070 * 324.21396 * 10 8 7 33 33 H 1.09004 * 111.00200 * 88.01878 * 10 8 7 34 34 H 1.09001 * 110.37023 * 155.84838 * 11 10 8 35 35 H 1.08998 * 110.36851 * 278.06473 * 11 10 8 36 36 H 0.96999 * 120.00396 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.06555 * 241.87043 * 21 12 11 38 38 H 1.09000 * 109.84738 * 120.60970 * 21 12 11 39 39 H 1.08999 * 109.47247 * 90.00154 * 25 24 2 40 40 H 1.09001 * 109.46830 * 209.99741 * 25 24 2 41 41 H 1.09003 * 109.47425 * 329.99706 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5028 -0.0005 5 8 0.6860 2.7628 -0.0006 6 7 2.7817 3.4987 -0.0010 7 6 2.3375 4.8948 -0.0010 8 6 3.5575 5.8182 -0.0009 9 1 4.2230 5.5754 0.8275 10 6 3.1203 7.3055 0.0639 11 6 4.3213 8.0125 -0.6123 12 7 4.7390 7.0982 -1.6909 13 6 5.4195 7.4581 -2.8234 14 1 5.6809 6.7099 -3.5570 15 6 5.7733 8.7846 -3.0285 16 7 5.4551 9.6964 -2.1341 17 14 6.7010 9.2758 -4.5737 18 1 6.9357 8.0736 -5.4132 19 1 5.8998 10.2645 -5.3388 20 1 8.0045 9.8796 -4.1975 21 6 4.3074 5.7323 -1.3470 22 7 3.5984 0.6789 -0.0054 23 7 3.6299 -0.6083 0.0001 24 7 2.3105 -1.0826 0.0005 25 6 1.8864 -2.4848 0.0006 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.7293 3.2913 -0.0006 30 1 1.7374 5.0852 -0.8908 31 1 1.7380 5.0854 0.8892 32 1 2.2025 7.4679 -0.5013 33 1 3.0039 7.6338 1.0968 34 1 4.0124 8.9721 -1.0268 35 1 5.1313 8.1523 0.1034 36 1 5.7026 10.6233 -2.2772 37 1 5.1749 5.0799 -1.2472 38 1 3.6401 5.3495 -2.1193 39 1 1.7816 -2.8328 -1.0270 40 1 2.6330 -3.0901 0.5148 41 1 0.9292 -2.5749 0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028459668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:12 Heat of formation + Delta-G solvation = 81.909844 kcal Electronic energy + Delta-G solvation = -23065.999269 eV Core-core repulsion = 19597.836115 eV Total energy + Delta-G solvation = -3468.163154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46564 -39.38238 -37.54694 -35.28619 -34.54512 -32.59108 -32.41313 -29.91000 -28.76306 -27.84925 -27.72549 -25.52222 -24.00592 -22.88527 -21.28283 -20.65502 -19.94071 -19.59336 -18.02081 -16.77807 -16.70349 -16.26621 -15.77397 -15.33925 -14.75569 -14.51832 -14.44345 -14.07474 -13.72599 -13.66100 -13.43994 -13.36151 -12.86009 -12.71893 -12.43846 -12.14900 -11.73109 -11.64365 -11.44485 -11.37637 -10.89947 -10.77934 -10.49874 -10.38930 -10.11933 -9.99607 -9.92037 -9.72855 -9.46539 -9.38348 -8.86490 -8.60619 -6.77927 -5.60791 -3.01910 0.88461 1.58447 1.75197 3.21664 3.27842 3.43232 3.48710 3.51303 3.96283 4.04758 4.31084 4.50072 4.52728 4.56532 4.78316 4.97873 5.13706 5.17797 5.32255 5.36991 5.46757 5.49527 5.57975 5.68443 5.76682 5.94944 6.10685 6.13158 6.16879 6.40736 6.49177 6.63429 6.64432 6.79485 6.98055 7.50981 7.56857 7.68193 7.80863 7.90393 8.22803 8.41260 9.27301 9.87980 10.53200 11.43389 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026344 B = 0.002956 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.592750 B = 9470.501393 C =10088.966381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.121 3.879 3 C -0.104 4.104 4 C 0.603 3.397 5 O -0.543 6.543 6 N -0.708 5.708 7 C 0.133 3.867 8 C -0.115 4.115 9 H 0.077 0.923 10 C -0.134 4.134 11 C 0.152 3.848 12 N -0.605 5.605 13 C -0.219 4.219 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.140 3.860 22 N -0.200 5.200 23 N -0.069 5.069 24 N -0.367 5.367 25 C 0.088 3.912 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.409 0.591 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.012 0.988 36 H 0.251 0.749 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -22.516 7.337 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.243 4.243 4 C 0.387 3.613 5 O -0.420 6.420 6 N -0.358 5.358 7 C 0.010 3.990 8 C -0.135 4.135 9 H 0.095 0.905 10 C -0.174 4.174 11 C 0.027 3.973 12 N -0.331 5.331 13 C -0.348 4.348 14 H 0.095 0.905 15 C -0.209 4.209 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.014 3.986 22 N -0.073 5.073 23 N -0.048 5.048 24 N -0.153 5.153 25 C -0.054 4.054 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.245 0.755 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.030 0.970 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.495 -22.564 7.220 25.911 hybrid contribution 0.149 0.069 -0.771 0.788 sum -10.345 -22.495 6.448 25.586 Atomic orbital electron populations 1.20723 0.84609 1.05318 1.04716 1.21927 0.96247 0.86338 0.97140 1.21285 0.88975 0.95599 1.18457 1.16691 0.85613 0.82442 0.76550 1.90750 1.15900 1.83655 1.51716 1.45883 1.10336 1.06246 1.73298 1.21523 0.96944 0.78260 1.02268 1.22454 0.95730 0.96004 0.99276 0.90472 1.23000 1.00986 0.93232 1.00139 1.21924 0.90832 0.95949 0.88580 1.44594 1.66170 1.01389 1.20973 1.19141 1.27259 0.92745 0.95624 0.90488 1.24784 1.01551 0.95843 0.98674 1.69808 1.51718 1.01088 1.34616 0.85999 0.79111 0.78171 0.82255 1.20547 1.21777 1.21794 1.21399 0.95457 0.89039 0.92713 1.74627 1.19078 1.04102 1.09473 1.82011 0.95871 1.03480 1.23477 1.50284 1.06541 1.07748 1.50746 1.22156 1.02381 0.76107 1.04722 0.88952 0.90785 0.86873 0.75512 0.90944 0.91366 0.91813 0.92110 0.87543 0.97038 0.93833 0.96136 0.95695 0.89242 0.88072 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 9.57 36.01 0.34 -0.32 16 2 C 0.12 1.26 7.02 -81.87 -0.57 0.68 16 3 C -0.10 -1.39 6.99 -83.55 -0.58 -1.98 16 4 C 0.60 8.92 7.82 -12.48 -0.10 8.82 16 5 O -0.54 -8.74 14.72 5.28 0.08 -8.66 16 6 N -0.71 -10.32 5.43 -61.35 -0.33 -10.65 16 7 C 0.13 2.03 5.00 -4.04 -0.02 2.01 16 8 C -0.12 -1.99 2.98 -88.78 -0.26 -2.26 16 9 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 10 C -0.13 -2.53 6.54 -24.59 -0.16 -2.69 16 11 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 12 N -0.61 -15.84 3.40 -169.83 -0.58 -16.42 16 13 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 16 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 17 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.14 2.97 6.67 -2.90 -0.02 2.95 16 22 N -0.20 -2.87 12.04 32.85 0.40 -2.47 16 23 N -0.07 -0.89 13.78 60.35 0.83 -0.06 16 24 N -0.37 -3.42 4.03 -63.59 -0.26 -3.67 16 25 C 0.09 0.32 11.33 59.84 0.68 1.00 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.28 7.18 -51.93 -0.37 -0.10 16 28 H 0.11 1.00 6.43 -51.93 -0.33 0.67 16 29 H 0.41 5.78 8.09 -40.82 -0.33 5.45 16 30 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.54 7.73 -51.93 -0.40 0.14 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 0.10 7.16 -51.93 -0.37 -0.27 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -34.63 339.71 -6.05 -40.68 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.88 Total: 0.40 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.96 Total: 5.02 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.62 Total: -60.03 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.63 -6.05 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028459668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.589 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds