Wall clock time and date at job start Tue Mar 31 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57770 * 2 1 4 4 C 1.47527 * 125.77368 * 359.97438 * 3 2 1 5 5 O 1.21592 * 119.99746 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99754 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.64140 * 305.69956 * 8 7 6 10 10 C 1.55156 * 110.72546 * 182.55775 * 8 7 6 11 11 C 1.54901 * 101.58691 * 206.13627 * 10 8 7 12 12 N 1.47432 * 104.83094 * 37.00621 * 11 10 8 13 13 C 1.36938 * 125.64779 * 155.90940 * 12 11 10 14 14 H 1.08001 * 120.00067 * 179.97438 * 13 12 11 15 15 C 1.38812 * 120.00002 * 359.97149 * 13 12 11 16 16 N 1.31622 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00271 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47015 * 120.00081 * 17 15 13 20 20 H 1.48503 * 109.47097 * 240.00338 * 17 15 13 21 21 C 1.47318 * 108.73760 * 335.71623 * 12 11 10 22 22 N 1.34405 * 108.45669 * 180.24360 * 3 2 1 23 23 N 1.28762 * 109.52007 * 359.58209 * 22 3 2 24 24 N 1.34817 * 126.58216 * 179.97438 * 2 1 3 25 25 C 1.46495 * 126.59072 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47210 * 90.00175 * 1 2 3 27 27 H 1.08994 * 109.47174 * 210.00139 * 1 2 3 28 28 H 1.09001 * 109.47013 * 330.00226 * 1 2 3 29 29 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 30 30 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 31 31 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 32 32 H 1.09007 * 111.00070 * 324.21396 * 10 8 7 33 33 H 1.09004 * 111.00200 * 88.01878 * 10 8 7 34 34 H 1.09001 * 110.37023 * 155.84838 * 11 10 8 35 35 H 1.08998 * 110.36851 * 278.06473 * 11 10 8 36 36 H 0.96999 * 120.00396 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.06555 * 241.87043 * 21 12 11 38 38 H 1.09000 * 109.84738 * 120.60970 * 21 12 11 39 39 H 1.08999 * 109.47247 * 90.00154 * 25 24 2 40 40 H 1.09001 * 109.46830 * 209.99741 * 25 24 2 41 41 H 1.09003 * 109.47425 * 329.99706 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5028 -0.0005 5 8 0.6860 2.7628 -0.0006 6 7 2.7817 3.4987 -0.0010 7 6 2.3375 4.8948 -0.0010 8 6 3.5575 5.8182 -0.0009 9 1 4.2230 5.5754 0.8275 10 6 3.1203 7.3055 0.0639 11 6 4.3213 8.0125 -0.6123 12 7 4.7390 7.0982 -1.6909 13 6 5.4195 7.4581 -2.8234 14 1 5.6809 6.7099 -3.5570 15 6 5.7733 8.7846 -3.0285 16 7 5.4551 9.6964 -2.1341 17 14 6.7010 9.2758 -4.5737 18 1 6.9357 8.0736 -5.4132 19 1 5.8998 10.2645 -5.3388 20 1 8.0045 9.8796 -4.1975 21 6 4.3074 5.7323 -1.3470 22 7 3.5984 0.6789 -0.0054 23 7 3.6299 -0.6083 0.0001 24 7 2.3105 -1.0826 0.0005 25 6 1.8864 -2.4848 0.0006 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.7293 3.2913 -0.0006 30 1 1.7374 5.0852 -0.8908 31 1 1.7380 5.0854 0.8892 32 1 2.2025 7.4679 -0.5013 33 1 3.0039 7.6338 1.0968 34 1 4.0124 8.9721 -1.0268 35 1 5.1313 8.1523 0.1034 36 1 5.7026 10.6233 -2.2772 37 1 5.1749 5.0799 -1.2472 38 1 3.6401 5.3495 -2.1193 39 1 1.7816 -2.8328 -1.0270 40 1 2.6330 -3.0901 0.5148 41 1 0.9292 -2.5749 0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028459668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:11 Heat of formation + Delta-G solvation = 56.200024 kcal Electronic energy + Delta-G solvation = -23067.114131 eV Core-core repulsion = 19597.836115 eV Total energy + Delta-G solvation = -3469.278016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.30807 -40.56696 -39.17767 -36.22064 -35.77784 -34.27965 -33.31325 -31.66879 -30.12710 -28.93928 -28.33000 -27.26627 -25.51717 -24.06350 -22.26546 -21.92639 -21.43058 -21.02605 -19.14256 -18.69451 -17.50110 -17.33597 -16.82242 -16.73593 -16.52351 -15.81819 -15.57278 -15.24118 -14.97848 -14.44090 -14.27300 -14.21416 -14.01171 -13.94859 -13.54149 -13.35854 -13.23655 -13.12473 -12.96937 -12.79544 -12.69110 -12.19793 -11.97796 -11.89142 -11.82909 -11.57537 -11.38176 -11.16999 -11.06318 -10.74399 -10.34080 -9.97724 -8.87706 -7.77268 -5.21338 0.10618 0.58053 1.13558 1.46160 1.47200 1.57700 2.13032 2.21677 2.49630 3.17374 3.31940 3.44456 3.61967 3.64194 3.75160 3.84876 3.99064 4.08321 4.30943 4.39714 4.47447 4.59687 4.67332 4.67471 4.68569 4.71773 4.80598 4.88128 4.92902 5.04552 5.10878 5.15412 5.34059 5.41700 5.48294 5.53397 5.68106 5.83711 6.32658 6.40652 6.87472 7.11516 7.12191 7.79119 8.42912 9.24849 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026344 B = 0.002956 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.592750 B = 9470.501393 C =10088.966381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 C -0.135 4.135 4 C 0.604 3.396 5 O -0.559 6.559 6 N -0.709 5.709 7 C 0.146 3.854 8 C -0.096 4.096 9 H 0.092 0.908 10 C -0.119 4.119 11 C 0.151 3.849 12 N -0.629 5.629 13 C -0.239 4.239 14 H 0.077 0.923 15 C -0.068 4.068 16 N -0.949 5.949 17 Si 0.980 3.020 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.137 3.863 22 N -0.227 5.227 23 N -0.095 5.095 24 N -0.353 5.353 25 C 0.072 3.928 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.411 0.589 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.073 0.927 35 H -0.011 1.011 36 H 0.247 0.753 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -24.917 7.681 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.275 4.275 4 C 0.389 3.611 5 O -0.438 6.438 6 N -0.359 5.359 7 C 0.022 3.978 8 C -0.115 4.115 9 H 0.110 0.890 10 C -0.158 4.158 11 C 0.027 3.973 12 N -0.355 5.355 13 C -0.368 4.368 14 H 0.095 0.905 15 C -0.260 4.260 16 N -0.599 5.599 17 Si 0.808 3.192 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.012 3.988 22 N -0.100 5.100 23 N -0.075 5.075 24 N -0.139 5.139 25 C -0.067 4.067 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.247 0.753 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.007 0.993 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.937 -25.028 7.571 28.744 hybrid contribution 0.559 0.685 -0.878 1.246 sum -11.378 -24.343 6.693 27.692 Atomic orbital electron populations 1.20845 0.82046 1.06435 1.05683 1.22380 0.97522 0.85690 0.95100 1.21307 0.89582 0.95696 1.20901 1.16861 0.85311 0.83025 0.75909 1.90733 1.16404 1.84093 1.52586 1.45844 1.10517 1.06019 1.73503 1.21311 0.95623 0.78270 1.02576 1.22296 0.96304 0.95582 0.97356 0.89005 1.22839 0.98334 0.93349 1.01286 1.21745 0.92255 0.95322 0.88021 1.44921 1.66115 1.03672 1.20772 1.19481 1.27555 0.93095 0.96658 0.90534 1.25632 1.02779 0.95872 1.01762 1.70058 1.52575 1.01033 1.36192 0.84980 0.77494 0.77895 0.78783 1.19343 1.21621 1.21800 1.21545 0.95729 0.86756 0.94800 1.74583 1.19954 1.04957 1.10498 1.81894 0.98050 1.03060 1.24504 1.50630 1.05200 1.09444 1.48650 1.22731 1.04234 0.73101 1.06607 0.87829 0.86746 0.88626 0.75332 0.92025 0.89644 0.91442 0.88982 0.90915 0.99332 0.94287 0.96059 0.96037 0.87428 0.87106 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.57 71.24 0.68 -0.33 16 2 C 0.13 2.48 7.02 41.72 0.29 2.77 16 3 C -0.13 -3.53 6.99 40.82 0.29 -3.25 16 4 C 0.60 17.45 7.82 86.69 0.68 18.13 16 5 O -0.56 -17.48 14.72 -4.01 -0.06 -17.53 16 6 N -0.71 -20.16 5.43 -466.27 -2.53 -22.69 16 7 C 0.15 4.22 5.00 86.38 0.43 4.65 16 8 C -0.10 -3.21 2.98 -9.60 -0.03 -3.24 16 9 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 10 C -0.12 -4.35 6.54 31.98 0.21 -4.14 16 11 C 0.15 7.60 5.89 86.85 0.51 8.11 16 12 N -0.63 -33.54 3.40 -691.22 -2.35 -35.89 16 13 C -0.24 -13.91 10.28 84.03 0.86 -13.04 16 14 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 15 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 16 N -0.95 -57.71 10.09 21.65 0.22 -57.49 16 17 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 21 C 0.14 5.81 6.67 86.67 0.58 6.39 16 22 N -0.23 -6.50 12.04 -49.99 -0.60 -7.10 16 23 N -0.10 -2.39 13.78 37.02 0.51 -1.88 16 24 N -0.35 -5.78 4.03 -355.10 -1.43 -7.22 16 25 C 0.07 0.27 11.33 127.77 1.45 1.71 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 0.31 7.18 -2.39 -0.02 0.30 16 28 H 0.10 1.50 6.43 -2.39 -0.02 1.48 16 29 H 0.41 11.47 8.09 -92.71 -0.75 10.72 16 30 H 0.06 1.95 8.01 -2.39 -0.02 1.93 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.43 8.05 -2.38 -0.02 2.41 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.07 4.16 5.88 -2.39 -0.01 4.14 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.02 0.93 7.73 -2.39 -0.02 0.91 16 39 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.13 -0.36 7.16 -2.39 -0.02 -0.38 16 Total: -1.00 -77.83 339.71 2.50 -75.33 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.30 Total: 11.25 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.42 Total: 14.26 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -6.19 Total: -132.27 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.06 Total: -17.53 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -77.83 2.50 -75.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028459668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.534 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds