Wall clock time and date at job start Tue Mar 31 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36595 * 126.57844 * 2 1 4 4 C 1.47525 * 125.77079 * 0.02562 * 3 2 1 5 5 O 1.21594 * 119.99969 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00169 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00401 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47345 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.88520 * 51.12359 * 8 7 6 10 10 C 1.55159 * 111.00459 * 175.00120 * 8 7 6 11 11 C 1.54327 * 102.93907 * 153.57454 * 10 8 7 12 12 N 1.47015 * 107.27300 * 337.80786 * 11 10 8 13 13 C 1.36944 * 125.64604 * 178.91968 * 12 11 10 14 14 H 1.07997 * 119.99723 * 180.02562 * 13 12 11 15 15 C 1.38809 * 119.99752 * 0.02562 * 13 12 11 16 16 N 1.31616 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46949 * 89.99770 * 17 15 13 19 19 H 1.48492 * 109.47137 * 209.99938 * 17 15 13 20 20 H 1.48503 * 109.46948 * 330.00180 * 17 15 13 21 21 C 1.47419 * 108.70483 * 358.94279 * 12 11 10 22 22 N 1.34402 * 108.46053 * 179.97438 * 3 2 1 23 23 N 1.28764 * 109.51916 * 0.02562 * 22 3 2 24 24 N 1.34805 * 126.58151 * 179.97438 * 2 1 3 25 25 C 1.46498 * 126.59572 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47431 * 269.97442 * 1 2 3 27 27 H 1.09000 * 109.47646 * 29.97542 * 1 2 3 28 28 H 1.08998 * 109.47061 * 149.97405 * 1 2 3 29 29 H 0.97007 * 119.99902 * 0.02562 * 6 4 3 30 30 H 1.09001 * 109.46908 * 300.00341 * 7 6 4 31 31 H 1.09007 * 109.46725 * 59.99807 * 7 6 4 32 32 H 1.08992 * 110.72272 * 271.93779 * 10 8 7 33 33 H 1.09004 * 110.71812 * 35.03654 * 10 8 7 34 34 H 1.09002 * 109.87799 * 97.22911 * 11 10 8 35 35 H 1.09004 * 109.88150 * 218.38462 * 11 10 8 36 36 H 0.97003 * 120.00313 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.36745 * 265.28785 * 21 12 11 38 38 H 1.08996 * 110.36916 * 142.97035 * 21 12 11 39 39 H 1.09002 * 109.47144 * 270.00144 * 25 24 2 40 40 H 1.09003 * 109.47280 * 30.00439 * 25 24 2 41 41 H 1.09005 * 109.47440 * 150.00270 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 0.0005 5 8 0.6858 2.7628 0.0015 6 7 2.7816 3.4988 0.0000 7 6 2.3374 4.8949 -0.0001 8 6 3.5573 5.8182 -0.0002 9 1 4.2529 5.5430 -0.7930 10 6 3.1299 7.3044 -0.1264 11 6 4.2924 8.0573 0.5543 12 7 4.9622 7.1057 1.4528 13 6 6.0586 7.3758 2.2275 14 1 6.4785 6.6049 2.8566 15 6 6.6304 8.6405 2.2040 16 7 6.1184 9.5802 1.4377 17 14 8.1266 9.0088 3.2602 18 1 9.3611 8.7079 2.4917 19 1 8.1201 10.4430 3.6449 20 1 8.0879 8.1679 4.4837 21 6 4.2582 5.8124 1.3813 22 7 3.5983 0.6790 0.0006 23 7 3.6298 -0.6083 0.0004 24 7 2.3104 -1.0825 0.0005 25 6 1.8864 -2.4848 0.0006 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 3.7292 3.2914 -0.0012 30 1 1.7372 5.0851 -0.8898 31 1 1.7380 5.0854 0.8902 32 1 3.0442 7.5934 -1.1738 33 1 2.1916 7.4818 0.3993 34 1 4.9951 8.4133 -0.1991 35 1 3.9037 8.8985 1.1283 36 1 6.5178 10.4640 1.4216 37 1 3.5208 5.7372 2.1805 38 1 4.9700 4.9892 1.4422 39 1 1.7808 -2.8324 1.0283 40 1 0.9295 -2.5751 -0.5136 41 1 2.6333 -3.0903 -0.5128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028459669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:15 Heat of formation + Delta-G solvation = 80.713797 kcal Electronic energy + Delta-G solvation = -23036.915465 eV Core-core repulsion = 19568.700446 eV Total energy + Delta-G solvation = -3468.215019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.46746 -39.38004 -37.55747 -35.28933 -34.55162 -32.59277 -32.40572 -29.91319 -28.77107 -27.86496 -27.74108 -25.50008 -24.00528 -22.89107 -21.27984 -20.61577 -19.91740 -19.71338 -18.02218 -16.74316 -16.70491 -16.28590 -15.79961 -15.24770 -14.73111 -14.50923 -14.44755 -14.04209 -13.76094 -13.67289 -13.38417 -13.35722 -12.93740 -12.85569 -12.27547 -12.14988 -11.95334 -11.70522 -11.40536 -11.31231 -10.85249 -10.74745 -10.49982 -10.37368 -10.13202 -10.00928 -9.84747 -9.75782 -9.59739 -9.38693 -8.86705 -8.54812 -6.77242 -5.65987 -2.99076 0.88274 1.58242 1.75101 3.21323 3.26991 3.44199 3.49061 3.51047 3.96022 4.04641 4.30745 4.49978 4.54063 4.56155 4.78136 4.97784 5.13060 5.17272 5.29207 5.36648 5.48437 5.49705 5.60730 5.67796 5.76261 5.96078 6.08896 6.11504 6.12742 6.41184 6.48388 6.57986 6.60635 6.75957 6.98630 7.50678 7.61884 7.68760 7.80746 7.88151 8.22114 8.31763 9.27951 9.88307 10.54537 11.45907 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.002975 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.056930 B = 9409.867173 C =10252.528900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.121 3.879 3 C -0.104 4.104 4 C 0.603 3.397 5 O -0.543 6.543 6 N -0.707 5.707 7 C 0.133 3.867 8 C -0.118 4.118 9 H 0.081 0.919 10 C -0.134 4.134 11 C 0.177 3.823 12 N -0.607 5.607 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.141 3.859 22 N -0.199 5.199 23 N -0.068 5.068 24 N -0.367 5.367 25 C 0.088 3.912 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.410 0.590 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.252 0.748 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 -22.530 -5.452 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.243 4.243 4 C 0.387 3.613 5 O -0.421 6.421 6 N -0.357 5.357 7 C 0.010 3.990 8 C -0.138 4.138 9 H 0.099 0.901 10 C -0.173 4.173 11 C 0.053 3.947 12 N -0.333 5.333 13 C -0.355 4.355 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.015 3.985 22 N -0.072 5.072 23 N -0.048 5.048 24 N -0.153 5.153 25 C -0.054 4.054 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.245 0.755 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.345 -22.559 -5.393 26.276 hybrid contribution 0.383 0.136 0.573 0.703 sum -11.962 -22.423 -4.820 25.867 Atomic orbital electron populations 1.20720 0.84621 1.05324 1.04694 1.21920 0.96240 0.86346 0.97160 1.21281 0.88979 0.95593 1.18486 1.16690 0.85602 0.82444 0.76537 1.90748 1.15906 1.83666 1.51765 1.45884 1.10374 1.06207 1.73266 1.21466 0.96968 0.78370 1.02202 1.22624 0.95781 0.95322 1.00092 0.90096 1.22856 1.00238 0.93745 1.00469 1.21144 0.90167 0.90955 0.92468 1.44484 1.32180 1.06587 1.50032 1.19073 1.02781 0.96101 1.17520 0.90473 1.24798 0.99601 0.96122 1.00053 1.69965 1.41894 1.03173 1.42058 0.86120 0.82625 0.77243 0.79801 1.21631 1.21719 1.20718 1.21591 0.94218 0.89926 0.92761 1.74633 1.19060 1.04102 1.09443 1.82020 0.95846 1.03480 1.23462 1.50288 1.06552 1.07749 1.50732 1.22158 1.02386 0.76112 1.04715 0.88968 0.86879 0.90786 0.75453 0.91374 0.91048 0.91993 0.92180 0.93577 0.93917 0.93813 0.96292 0.94439 0.89244 0.88569 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.57 36.00 0.34 -0.31 16 2 C 0.12 1.24 7.02 -81.88 -0.57 0.66 16 3 C -0.10 -1.38 6.99 -83.55 -0.58 -1.97 16 4 C 0.60 8.78 7.82 -12.47 -0.10 8.68 16 5 O -0.54 -8.59 14.72 5.28 0.08 -8.51 16 6 N -0.71 -10.17 5.50 -61.35 -0.34 -10.50 16 7 C 0.13 1.98 5.13 -4.05 -0.02 1.96 16 8 C -0.12 -2.04 3.05 -88.47 -0.27 -2.31 16 9 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 10 C -0.13 -2.48 6.42 -24.89 -0.16 -2.64 16 11 C 0.18 4.36 5.37 -3.07 -0.02 4.34 16 12 N -0.61 -15.81 3.39 -170.08 -0.58 -16.38 16 13 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 14 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -27.59 10.31 55.49 0.57 -27.02 16 17 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 C 0.14 2.96 6.65 -2.53 -0.02 2.94 16 22 N -0.20 -2.85 12.04 32.85 0.40 -2.46 16 23 N -0.07 -0.88 13.78 60.35 0.83 -0.05 16 24 N -0.37 -3.39 4.03 -63.59 -0.26 -3.65 16 25 C 0.09 0.31 11.33 59.85 0.68 0.99 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.11 0.98 6.43 -51.93 -0.33 0.65 16 28 H 0.07 0.27 7.18 -51.93 -0.37 -0.10 16 29 H 0.41 5.76 8.16 -40.82 -0.33 5.42 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.11 7.96 -51.93 -0.41 0.69 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 35 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 0.10 7.16 -51.93 -0.37 -0.27 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -34.90 340.62 -6.08 -40.98 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.93 Total: -0.43 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.97 Total: 5.36 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.63 Total: -60.06 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.90 -6.08 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028459669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.693 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds