Wall clock time and date at job start Tue Mar 31 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36595 * 126.57844 * 2 1 4 4 C 1.47525 * 125.77079 * 0.02562 * 3 2 1 5 5 O 1.21594 * 119.99969 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00169 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00401 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47345 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.88520 * 51.12359 * 8 7 6 10 10 C 1.55159 * 111.00459 * 175.00120 * 8 7 6 11 11 C 1.54327 * 102.93907 * 153.57454 * 10 8 7 12 12 N 1.47015 * 107.27300 * 337.80786 * 11 10 8 13 13 C 1.36944 * 125.64604 * 178.91968 * 12 11 10 14 14 H 1.07997 * 119.99723 * 180.02562 * 13 12 11 15 15 C 1.38809 * 119.99752 * 0.02562 * 13 12 11 16 16 N 1.31616 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46949 * 89.99770 * 17 15 13 19 19 H 1.48492 * 109.47137 * 209.99938 * 17 15 13 20 20 H 1.48503 * 109.46948 * 330.00180 * 17 15 13 21 21 C 1.47419 * 108.70483 * 358.94279 * 12 11 10 22 22 N 1.34402 * 108.46053 * 179.97438 * 3 2 1 23 23 N 1.28764 * 109.51916 * 0.02562 * 22 3 2 24 24 N 1.34805 * 126.58151 * 179.97438 * 2 1 3 25 25 C 1.46498 * 126.59572 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47431 * 269.97442 * 1 2 3 27 27 H 1.09000 * 109.47646 * 29.97542 * 1 2 3 28 28 H 1.08998 * 109.47061 * 149.97405 * 1 2 3 29 29 H 0.97007 * 119.99902 * 0.02562 * 6 4 3 30 30 H 1.09001 * 109.46908 * 300.00341 * 7 6 4 31 31 H 1.09007 * 109.46725 * 59.99807 * 7 6 4 32 32 H 1.08992 * 110.72272 * 271.93779 * 10 8 7 33 33 H 1.09004 * 110.71812 * 35.03654 * 10 8 7 34 34 H 1.09002 * 109.87799 * 97.22911 * 11 10 8 35 35 H 1.09004 * 109.88150 * 218.38462 * 11 10 8 36 36 H 0.97003 * 120.00313 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.36745 * 265.28785 * 21 12 11 38 38 H 1.08996 * 110.36916 * 142.97035 * 21 12 11 39 39 H 1.09002 * 109.47144 * 270.00144 * 25 24 2 40 40 H 1.09003 * 109.47280 * 30.00439 * 25 24 2 41 41 H 1.09005 * 109.47440 * 150.00270 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 0.0005 5 8 0.6858 2.7628 0.0015 6 7 2.7816 3.4988 0.0000 7 6 2.3374 4.8949 -0.0001 8 6 3.5573 5.8182 -0.0002 9 1 4.2529 5.5430 -0.7930 10 6 3.1299 7.3044 -0.1264 11 6 4.2924 8.0573 0.5543 12 7 4.9622 7.1057 1.4528 13 6 6.0586 7.3758 2.2275 14 1 6.4785 6.6049 2.8566 15 6 6.6304 8.6405 2.2040 16 7 6.1184 9.5802 1.4377 17 14 8.1266 9.0088 3.2602 18 1 9.3611 8.7079 2.4917 19 1 8.1201 10.4430 3.6449 20 1 8.0879 8.1679 4.4837 21 6 4.2582 5.8124 1.3813 22 7 3.5983 0.6790 0.0006 23 7 3.6298 -0.6083 0.0004 24 7 2.3104 -1.0825 0.0005 25 6 1.8864 -2.4848 0.0006 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 3.7292 3.2914 -0.0012 30 1 1.7372 5.0851 -0.8898 31 1 1.7380 5.0854 0.8902 32 1 3.0442 7.5934 -1.1738 33 1 2.1916 7.4818 0.3993 34 1 4.9951 8.4133 -0.1991 35 1 3.9037 8.8985 1.1283 36 1 6.5178 10.4640 1.4216 37 1 3.5208 5.7372 2.1805 38 1 4.9700 4.9892 1.4422 39 1 1.7808 -2.8324 1.0283 40 1 0.9295 -2.5751 -0.5136 41 1 2.6333 -3.0903 -0.5128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028459669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:14 Heat of formation + Delta-G solvation = 54.633712 kcal Electronic energy + Delta-G solvation = -23038.046382 eV Core-core repulsion = 19568.700446 eV Total energy + Delta-G solvation = -3469.345936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.29964 -40.54402 -39.18885 -36.20805 -35.76578 -34.27905 -33.30519 -31.66789 -30.14573 -28.94818 -28.32270 -27.23542 -25.52242 -24.05187 -22.18520 -21.88472 -21.53569 -21.06482 -19.13986 -18.64248 -17.48584 -17.35723 -16.78054 -16.69631 -16.42489 -15.86000 -15.58441 -15.23492 -14.87207 -14.65312 -14.22114 -14.12123 -13.94926 -13.93250 -13.79184 -13.41011 -13.23335 -13.02046 -12.95673 -12.77127 -12.62375 -12.18711 -12.01966 -11.88809 -11.84548 -11.53752 -11.44457 -11.17161 -11.06849 -10.69823 -10.32744 -9.96015 -8.88742 -7.84534 -5.19910 0.11550 0.59077 1.14436 1.45415 1.47666 1.56306 2.14505 2.22653 2.49920 3.18486 3.33305 3.45494 3.62280 3.62865 3.74676 3.86289 4.03812 4.06718 4.31403 4.40121 4.46999 4.60338 4.65624 4.67968 4.68536 4.73849 4.82448 4.88451 4.93827 5.05227 5.10581 5.11367 5.34242 5.45697 5.47032 5.54461 5.70412 5.79507 6.21313 6.41701 6.88356 7.11657 7.12758 7.78983 8.43322 9.25966 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.002975 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.056930 B = 9409.867173 C =10252.528900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 C -0.135 4.135 4 C 0.604 3.396 5 O -0.559 6.559 6 N -0.709 5.709 7 C 0.146 3.854 8 C -0.098 4.098 9 H 0.085 0.915 10 C -0.120 4.120 11 C 0.182 3.818 12 N -0.630 5.630 13 C -0.243 4.243 14 H 0.080 0.920 15 C -0.068 4.068 16 N -0.952 5.952 17 Si 0.979 3.021 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.270 1.270 21 C 0.137 3.863 22 N -0.228 5.228 23 N -0.096 5.096 24 N -0.354 5.354 25 C 0.072 3.928 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.411 0.589 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.012 0.988 35 H 0.006 0.994 36 H 0.247 0.753 37 H 0.021 0.979 38 H 0.040 0.960 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.618 -25.117 -5.672 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.275 4.275 4 C 0.390 3.610 5 O -0.438 6.438 6 N -0.359 5.359 7 C 0.022 3.978 8 C -0.117 4.117 9 H 0.103 0.897 10 C -0.158 4.158 11 C 0.057 3.943 12 N -0.356 5.356 13 C -0.372 4.372 14 H 0.098 0.902 15 C -0.260 4.260 16 N -0.601 5.601 17 Si 0.807 3.193 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.195 1.195 21 C 0.012 3.988 22 N -0.100 5.100 23 N -0.076 5.076 24 N -0.139 5.139 25 C -0.067 4.067 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.132 0.868 29 H 0.246 0.754 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.830 -25.215 -5.613 29.301 hybrid contribution 0.781 0.805 0.660 1.301 sum -13.049 -24.410 -4.953 28.118 Atomic orbital electron populations 1.20844 0.82020 1.06423 1.05710 1.22381 0.97528 0.85678 0.95101 1.21322 0.89544 0.95755 1.20875 1.16841 0.85306 0.82977 0.75921 1.90732 1.16351 1.84076 1.52595 1.45854 1.10516 1.06049 1.73490 1.21269 0.95485 0.78191 1.02809 1.22426 0.96459 0.95133 0.97701 0.89673 1.22716 0.98172 0.93504 1.01447 1.20936 0.91256 0.90826 0.91234 1.44816 1.32116 1.08774 1.49880 1.19464 1.03643 0.96358 1.17776 0.90216 1.25662 1.02648 0.96077 1.01653 1.70190 1.43173 1.03202 1.43502 0.85072 0.79029 0.76753 0.78451 1.21187 1.21953 1.19483 1.21754 0.94149 0.87817 0.95060 1.74589 1.19996 1.04955 1.10487 1.81904 0.98053 1.03079 1.24558 1.50633 1.05214 1.09453 1.48647 1.22729 1.04212 0.73121 1.06612 0.87762 0.88604 0.86807 0.75369 0.89771 0.91398 0.89418 0.90552 0.96996 0.97575 0.94392 0.96160 0.94206 0.87399 0.85200 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.57 71.23 0.68 -0.29 16 2 C 0.13 2.44 7.02 41.72 0.29 2.73 16 3 C -0.13 -3.48 6.99 40.82 0.29 -3.20 16 4 C 0.60 17.07 7.82 86.69 0.68 17.75 16 5 O -0.56 -16.97 14.72 -4.01 -0.06 -17.03 16 6 N -0.71 -19.74 5.50 -466.27 -2.56 -22.30 16 7 C 0.15 4.08 5.13 86.38 0.44 4.52 16 8 C -0.10 -3.24 3.05 -9.40 -0.03 -3.27 16 9 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 10 C -0.12 -4.30 6.42 31.78 0.20 -4.10 16 11 C 0.18 9.21 5.37 86.73 0.47 9.68 16 12 N -0.63 -33.46 3.39 -692.01 -2.35 -35.81 16 13 C -0.24 -14.15 10.28 84.03 0.86 -13.29 16 14 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 15 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 16 N -0.95 -58.77 10.31 21.65 0.22 -58.55 16 17 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 18 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 19 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 C 0.14 5.73 6.65 86.86 0.58 6.30 16 22 N -0.23 -6.49 12.04 -49.99 -0.60 -7.09 16 23 N -0.10 -2.41 13.78 37.02 0.51 -1.90 16 24 N -0.35 -5.73 4.03 -355.10 -1.43 -7.16 16 25 C 0.07 0.26 11.33 127.77 1.45 1.71 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 1.45 6.43 -2.39 -0.02 1.44 16 28 H 0.11 0.28 7.18 -2.39 -0.02 0.26 16 29 H 0.41 11.38 8.16 -92.70 -0.76 10.62 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 1.99 7.96 -2.38 -0.02 1.97 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 34 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 35 H 0.01 0.34 7.51 -2.39 -0.02 0.32 16 36 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.02 0.86 7.91 -2.39 -0.02 0.84 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.13 -0.37 7.16 -2.39 -0.02 -0.39 16 41 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 Total: -1.00 -78.80 340.62 2.43 -76.37 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.29 Total: 9.28 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.38 Total: 15.05 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -6.21 Total: -132.82 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.06 Total: -17.03 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -78.80 2.43 -76.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028459669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.004 kcal (2) G-P(sol) polarization free energy of solvation -78.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds