Wall clock time and date at job start Tue Mar 31 2020 03:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47256 * 2 1 4 4 C 1.36594 * 126.58043 * 269.95583 * 3 2 1 5 5 C 1.47530 * 125.77231 * 0.04096 * 4 3 2 6 6 O 1.21596 * 119.99378 * 359.97438 * 5 4 3 7 7 N 1.34764 * 120.00429 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00614 * 180.02562 * 7 5 4 9 9 C 1.53955 * 113.74005 * 253.74663 * 8 7 5 10 10 N 1.47817 * 86.03236 * 222.08037 * 9 8 7 11 11 C 1.36936 * 134.45299 * 204.64818 * 10 9 8 12 12 H 1.08000 * 119.99952 * 179.86386 * 11 10 9 13 13 C 1.38811 * 120.00091 * 359.85896 * 11 10 9 14 14 N 1.31617 * 120.00176 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47068 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47089 * 120.00079 * 15 13 11 18 18 H 1.48497 * 109.47429 * 240.00334 * 15 13 11 19 19 C 1.47576 * 91.05207 * 24.54825 * 10 9 8 20 20 N 1.34398 * 108.46059 * 180.02562 * 4 3 2 21 21 N 1.28763 * 109.52184 * 359.74760 * 20 4 3 22 22 N 1.34809 * 126.58193 * 90.00344 * 3 2 1 23 23 C 1.46506 * 126.59257 * 359.92857 * 22 3 2 24 24 C 1.52997 * 109.47289 * 90.00021 * 23 22 3 25 25 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46744 * 299.99701 * 1 2 3 27 27 H 1.08999 * 109.47184 * 59.99718 * 1 2 3 28 28 H 1.09010 * 109.46715 * 239.99905 * 2 1 3 29 29 H 1.08999 * 109.47184 * 120.00282 * 2 1 3 30 30 H 0.97008 * 119.99989 * 359.97438 * 7 5 4 31 31 H 1.09004 * 112.94019 * 25.32819 * 8 7 5 32 32 H 1.09004 * 113.76694 * 336.33957 * 9 8 7 33 33 H 1.08997 * 113.77015 * 107.73997 * 9 8 7 34 34 H 0.97002 * 120.00221 * 179.97438 * 14 13 11 35 35 H 1.09003 * 113.77325 * 221.15365 * 19 10 9 36 36 H 1.09001 * 113.77310 * 89.75365 * 19 10 9 37 37 H 1.09001 * 109.47060 * 210.00290 * 23 22 3 38 38 H 1.09004 * 109.47073 * 329.99778 * 23 22 3 39 39 H 1.09001 * 109.46832 * 299.99854 * 24 23 22 40 40 H 1.08996 * 109.46952 * 59.99873 * 24 23 22 41 41 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3046 2.1880 -1.0969 5 6 2.1557 1.7662 -2.5027 6 8 1.7596 0.6464 -2.7628 7 7 2.4587 2.6220 -3.4987 8 6 2.3103 2.2034 -4.8948 9 6 3.6483 1.9291 -5.6052 10 7 3.0611 2.6361 -6.7628 11 6 3.2823 2.6125 -8.1140 12 1 2.6992 3.2441 -8.7678 13 6 4.2562 1.7768 -8.6433 14 7 4.9665 1.0068 -7.8466 15 14 4.5585 1.7451 -10.4864 16 1 3.6357 2.6968 -11.1559 17 1 5.9630 2.1397 -10.7645 18 1 4.3177 0.3743 -11.0041 19 6 2.1394 3.3752 -5.8785 20 7 2.7306 3.3921 -0.6789 21 7 2.7355 3.4238 0.6083 22 7 2.3003 2.1782 1.0825 23 6 2.1576 1.7789 2.4849 24 6 3.4674 1.1576 2.9741 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.7743 3.5155 -3.2913 31 1 1.5739 1.4103 -5.0246 32 1 4.4971 2.4470 -5.1585 33 1 3.8409 0.8716 -5.7861 34 1 5.6468 0.4225 -8.2166 35 1 1.1294 3.4702 -6.2773 36 1 2.5439 4.3188 -5.5123 37 1 1.9225 2.6545 3.0899 38 1 1.3533 1.0487 2.5747 39 1 3.7024 0.2819 2.3690 40 1 4.2717 1.8878 2.8842 41 1 3.3611 0.8601 4.0173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030944365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:51 Heat of formation + Delta-G solvation = 82.017232 kcal Electronic energy + Delta-G solvation = -23349.315820 eV Core-core repulsion = 19881.157322 eV Total energy + Delta-G solvation = -3468.158497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.35714 -40.77984 -39.10701 -36.79774 -35.16574 -34.72625 -33.74602 -31.45554 -30.95394 -29.34147 -26.62705 -26.14163 -25.34182 -24.61276 -23.86029 -21.66619 -21.45838 -21.10658 -18.92338 -18.75463 -17.42444 -17.19243 -17.09119 -16.88976 -15.86246 -15.74078 -15.63428 -15.58474 -15.14685 -14.78200 -14.56895 -13.96441 -13.75920 -13.66789 -13.35597 -13.30628 -13.22178 -13.13504 -12.83006 -12.70025 -12.64487 -12.29670 -12.27876 -12.20626 -11.89828 -11.82194 -11.52931 -11.19173 -11.04636 -10.89583 -10.29294 -9.90238 -8.97501 -7.91087 -5.26903 0.10496 0.60513 1.08219 1.46483 1.48405 1.58826 2.10708 2.23023 2.50134 3.12797 3.25443 3.34794 3.46781 3.53249 3.72769 3.84322 3.96608 4.14735 4.28574 4.29443 4.31145 4.41826 4.51026 4.55702 4.66150 4.75084 4.76303 4.90267 4.93065 4.97098 5.09692 5.19073 5.21448 5.24123 5.33230 5.48167 5.53166 5.67791 5.88922 6.47465 6.88500 6.90935 7.17607 7.58254 8.51337 9.25944 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.003046 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.511105 B = 9191.653500 C = 9343.479538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C 0.137 3.863 4 C -0.127 4.127 5 C 0.602 3.398 6 O -0.560 6.560 7 N -0.695 5.695 8 C 0.123 3.877 9 C 0.153 3.847 10 N -0.637 5.637 11 C -0.234 4.234 12 H 0.091 0.909 13 C -0.070 4.070 14 N -0.955 5.955 15 Si 0.985 3.015 16 H -0.261 1.261 17 H -0.293 1.293 18 H -0.291 1.291 19 C 0.121 3.879 20 N -0.224 5.224 21 N -0.088 5.088 22 N -0.346 5.346 23 C 0.103 3.897 24 C -0.169 4.169 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.412 0.588 31 H 0.104 0.896 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.248 0.752 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 -0.898 25.949 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.002 4.002 4 C -0.267 4.267 5 C 0.387 3.613 6 O -0.438 6.438 7 N -0.345 5.345 8 C 0.017 3.983 9 C 0.026 3.974 10 N -0.364 5.364 11 C -0.362 4.362 12 H 0.109 0.891 13 C -0.263 4.263 14 N -0.603 5.603 15 Si 0.812 3.188 16 H -0.185 1.185 17 H -0.220 1.220 18 H -0.218 1.218 19 C -0.005 4.005 20 N -0.097 5.097 21 N -0.067 5.067 22 N -0.132 5.132 23 C -0.016 4.016 24 C -0.226 4.226 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.249 0.751 31 H 0.122 0.878 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.609 -0.337 25.914 27.309 hybrid contribution 0.681 -0.398 -1.287 1.509 sum -7.928 -0.735 24.627 25.882 Atomic orbital electron populations 1.21650 0.92095 1.03884 1.01886 1.20600 0.97988 0.85617 1.06139 1.22267 0.95182 0.96891 0.85865 1.21198 1.16992 0.93230 0.95249 1.17019 0.76731 0.84349 0.83205 1.90741 1.48561 1.20444 1.84058 1.45745 1.66130 1.17333 1.05246 1.23276 0.98510 0.98536 0.77954 1.22591 0.93116 0.96800 0.84902 1.46065 1.41957 1.47152 1.01243 1.19482 1.15692 1.19644 0.81405 0.89112 1.25737 0.98616 0.99222 1.02726 1.70051 1.26055 1.29216 1.35026 0.84924 0.77371 0.77350 0.79130 1.18544 1.21986 1.21848 1.23005 0.95006 0.94172 0.88288 1.74569 1.11505 1.18722 1.04934 1.81844 1.21049 1.00859 1.02939 1.50803 1.43821 1.09772 1.08835 1.22567 1.01673 1.03705 0.73646 1.22204 0.95385 1.00964 1.04095 0.89369 0.91122 0.94304 0.88732 0.86616 0.75136 0.87798 0.96246 0.94267 0.94259 0.91235 0.92281 0.86067 0.84826 0.92030 0.93101 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.90 71.98 0.71 -1.28 16 2 C -0.06 -1.08 5.43 29.85 0.16 -0.92 16 3 C 0.14 3.10 6.27 41.72 0.26 3.36 16 4 C -0.13 -3.80 6.99 40.82 0.29 -3.51 16 5 C 0.60 20.98 7.82 86.70 0.68 21.66 16 6 O -0.56 -21.61 14.34 -4.02 -0.06 -21.67 16 7 N -0.69 -24.33 5.37 -450.56 -2.42 -26.74 16 8 C 0.12 5.04 4.40 46.75 0.21 5.25 16 9 C 0.15 7.82 7.33 86.44 0.63 8.45 16 10 N -0.64 -33.89 3.70 -716.65 -2.65 -36.55 16 11 C -0.23 -13.45 10.70 84.03 0.90 -12.55 16 12 H 0.09 4.91 7.83 -2.91 -0.02 4.88 16 13 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 14 N -0.95 -59.83 11.39 21.65 0.25 -59.58 16 15 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 18 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 19 C 0.12 4.92 8.69 86.49 0.75 5.67 16 20 N -0.22 -6.86 12.04 -49.99 -0.60 -7.46 16 21 N -0.09 -2.33 13.78 37.02 0.51 -1.82 16 22 N -0.35 -6.58 3.63 -333.77 -1.21 -7.79 16 23 C 0.10 0.79 6.87 86.38 0.59 1.38 16 24 C -0.17 -1.12 10.24 71.98 0.74 -0.38 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 2.17 6.43 -2.38 -0.02 2.16 16 29 H 0.12 1.04 7.83 -2.39 -0.02 1.02 16 30 H 0.41 13.14 8.40 -92.70 -0.78 12.36 16 31 H 0.10 4.48 7.51 -2.39 -0.02 4.47 16 32 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.04 2.29 7.16 -2.39 -0.02 2.27 16 34 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 37 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.13 0.23 7.77 -2.38 -0.02 0.21 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -77.38 347.87 2.49 -74.89 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.27 Total: 14.46 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 6.39 Total: 23.48 kcal Atomic # 7 Polarization: -133.82 SS G_CDS: -6.13 Total: -139.95 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -77.38 2.49 -74.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030944365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.907 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds